CmaCh08G005400 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G005400
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	SpoU_methylase domain-containing protein
Location	Cma_Chr08: 3111812 .. 3114600 (-)
RNA-Seq Expression	CmaCh08G005400
Synteny	CmaCh08G005400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGACTTAGCTCTGAAACGAGCTCCTAGAAGACCTGAGCAGCTCAACAGAGAGGCGCGCAGTACGGCAGAAGAGCGGCGGCGACAAGAAGAAGATTGCTCTGCTAAGATGCCATTAATGGATACAACAGCGACCACTCTTAGAACATTGCACCCATTTTCCCCCTTTCTACTACGCTCATCGACGTCTCATCGTCTTCTTCGCGCTCGCTGCTTCTCCCATTTCAGCCACAAACACCGTCATCCGTGTTCTTCCTCCTCTCGCCGCCTCCTCCCCTTCTGCTCCTTCTGTAAGTTCGTATCTGTTGTAATTGAATTGAATGTTCTTATACCCTTTTGATTCTTAGTTTCTGCTGTGAATTGGGTTTGATTTGGTAATGGCGCAGCTGAAAAAGGGGAGGGTTCATCCGGTTCTCTGCCGCGCGGTGTTGGTGAGGCCCTAAATGGGGTTTCGCAGCAGAAGGTTCTTCAAGTTGTGTTGGTTTCTCCCCTGGTAATTATGAAGCATATAACGAGTGCCCTTGTTCATAATACTCCAAAGTGCTTACCTGATTCTTCAACTCTTCTTGCCCTGTGGGACGAGTGCCTCTGAATTATTAGATATCTCTTCCTAGATTCTTGATGTTCTTTGAATCACTGTTCTTCATTATTACTTAAAACTTCACGACGGTTGGTAGGAGAACGAAACACCCCTTATAATAGTGTAGAAACCTCTTTCTAACCGACGCTTTTTAAAAACATTGAGAGTAAGCCCAAAAAGAATAGCCTAAAGAGGACCATATCTGCTAGCTCCTAAAGAGGACAATATCTGCTAGCCTTGAACGGTTCATTTGTTGATATTCCCATTGGTCTTCTGTTTGAAAGCTAAGGGAACTTTTAGTTTGTTGTTTACATCTCTGGTGTGGGAAATCTTGATGGTAAGCTGGAAATCTTAGGGGGTATTATTGGATGATTGACAAGTTAGAATTAGTCGAGGTGCGACTAATTGGGATTGACAAAGGCTGTTTAGTGTCACGGTTATGCTCGTTTAAGGTGTGTTGTCATGGCCACATGTTGATGTCATGTCAAACCCTTTATTTGATTTCATGTTGTATTACCTTACTATTGTATTTTTTGTTTGTATGACTGCGAAATCATATCTAGGTCTTCTAGACCTGAATCTCAAAATGTACTAGAGGGGTATCTGACTAGTCGTCGACTCCTCCCATCCAAATGTTGTATGACTATTCGGTGAAATCATGTATAAGTTTGTCAAACATGAATCGCCTCAAAATGTACTATAGGGGATGTAACAAATCGTACTCGTAATTATATGTTATCTAAGTCGTTGTATTGTCTCTTCTTTCAATCTTGTTTTTAAACTCTCTTTAAAAAATCTCTTTGCTCCCGTTTTCTAAAACCTTTTTTTCAAAATGGGGTATGAATTGGCTTGACTCATTCGGTGCTGGAAGGGAGTGTCGCACACTATCAAGAAAAGTGAGATTGTGAAGCTTGGCAACTTCTTCTTCAAGTTGAGATGTGAGGGTCGAGGAAACGATGTCTGGTAGAAATAACAATCGGTCATATTTTTGTTGTTGATGTGATATCAGAACTAATTCATCTTGTGATGTTAATCATAAACTTTTGTTTTGACTGTGAACTCTGAATTGGGTTGCAGACAACCTCAATTCTTCAAGGCTGGCTCTTAGATTTCTGTTGTCCATGACAGATTCCTGGGAACACTGGTAGCATTGCCAGAACATGTGCTGCATCAGCTGTTGGACTACATCTAGTTGGGGTTAGTTTCAAAACATCGCTACTTCGAGTGCAATCGTTCTAATTTTTCCCCTCTTAGCTGGAGATCACCAAAAACTTACCTGCTCGTATCGTTTGTTTCTATGTCTTTCGTTTTCAGCCATTGGGATTTAAGGTGGACGACACGAAGCTAAAGCGTGCTGGTTTGGATTACTGGCCGTATCCCATAGGAATTCAAGTTCTTTGAATACTAGGAATACTAGATTTATTTTCGATTTTGAACTGAGATTTGTTAAACCGATATCACTGTACATATGGTTCGATGTTTTCAAGTTTTAACATCATGTTTTAGATACGTCGTCGTTAAAATTCATAACACGTGGGCAGAGTTTCGAGACTACTTCAAAAAACAGGTAGTTTTTGTTCATGTATCAGAGAAAATGTGCACAAAACTCCATTTTCTTGATGATTGTTCTTGTCGATGTACAGGAAGGAGAAAAACGGCTGCTAGCATTTACAAAGAGAGGGACTACACTCCACTCGGCGAGTGCCCATTTCTTTGATCTTTTTCTGTCTATAATCAGGGAAGGAGAGATTTTGAGTAACAAGGATTGTTTTCTCTTTTCATTTCTGCAGGATTTTTCGTACAAGCAGGGCGATTACTTGTTGTTCAGGTCGGAAACTAGTGGGTTACCAGCTGAAGCTCTTGAGGATTGCAAGAACCAGGCATTTGGTGGGGGGACCTTAAGAATTCCAATGGTTGAAACTTATGTTAGATGCCTAAATCTTTCTGTAAGTGTTGGCATTGCTATATATGAAGCTTCACGACAACTAAATTACCAGCAACTTCAGATTGAACCAGAGGGTTGTACCAACAACAATGAACAGTCTATCATTACAGAGGATCTTTTTGCTTGATTCTTTGATATGAACTTTTGCACCATTTTCAATTGATTTGAACACAGCAAAGAAGCTCATGAAAGATAGTAGACACATTGCTTACCCTACCTATGGTCTTAAAAGTTCATTTATTAGTCTTACTCTGCAGTGCCATCCCG

mRNA sequence

CGACTTAGCTCTGAAACGAGCTCCTAGAAGACCTGAGCAGCTCAACAGAGAGGCGCGCAGTACGGCAGAAGAGCGGCGGCGACAAGAAGAAGATTGCTCTGCTAAGATGCCATTAATGGATACAACAGCGACCACTCTTAGAACATTGCACCCATTTTCCCCCTTTCTACTACGCTCATCGACGTCTCATCGTCTTCTTCGCGCTCGCTGCTTCTCCCATTTCAGCCACAAACACCGTCATCCGTGTTCTTCCTCCTCTCGCCGCCTCCTCCCCTTCTGCTCCTTCTCTGAAAAAGGGGAGGGTTCATCCGGTTCTCTGCCGCGCGGTGTTGGTGAGGCCCTAAATGGGGTTTCGCAGCAGAAGGTTCTTCAAGTTGTGTTGGTTTCTCCCCTGATTCCTGGGAACACTGGTAGCATTGCCAGAACATGTGCTGCATCAGCTGTTGGACTACATCTAGTTGGGCCATTGGGATTTAAGGTGGACGACACGAAGCTAAAGCGTGCTGGTTTGGATTACTGGCCATACGTCGTCGTTAAAATTCATAACACGTGGGCAGAGTTTCGAGACTACTTCAAAAAACAGGAAGGAGAAAAACGGCTGCTAGCATTTACAAAGAGAGGGACTACACTCCACTCGGATTTTTCGTACAAGCAGGGCGATTACTTGTTGTTCAGGTCGGAAACTAGTGGGTTACCAGCTGAAGCTCTTGAGGATTGCAAGAACCAGGCATTTGGTGGGGGGACCTTAAGAATTCCAATGGTTGAAACTTATGTTAGATGCCTAAATCTTTCTGTAAGTGTTGGCATTGCTATATATGAAGCTTCACGACAACTAAATTACCAGCAACTTCAGATTGAACCAGAGGGTTGTACCAACAACAATGAACAGTCTATCATTACAGAGGATCTTTTTGCTTGATTCTTTGATATGAACTTTTGCACCATTTTCAATTGATTTGAACACAGCAAAGAAGCTCATGAAAGATAGTAGACACATTGCTTACCCTACCTATGGTCTTAAAAGTTCATTTATTAGTCTTACTCTGCAGTGCCATCCCG

Coding sequence (CDS)

ATGCCATTAATGGATACAACAGCGACCACTCTTAGAACATTGCACCCATTTTCCCCCTTTCTACTACGCTCATCGACGTCTCATCGTCTTCTTCGCGCTCGCTGCTTCTCCCATTTCAGCCACAAACACCGTCATCCGTGTTCTTCCTCCTCTCGCCGCCTCCTCCCCTTCTGCTCCTTCTCTGAAAAAGGGGAGGGTTCATCCGGTTCTCTGCCGCGCGGTGTTGGTGAGGCCCTAAATGGGGTTTCGCAGCAGAAGGTTCTTCAAGTTGTGTTGGTTTCTCCCCTGATTCCTGGGAACACTGGTAGCATTGCCAGAACATGTGCTGCATCAGCTGTTGGACTACATCTAGTTGGGCCATTGGGATTTAAGGTGGACGACACGAAGCTAAAGCGTGCTGGTTTGGATTACTGGCCATACGTCGTCGTTAAAATTCATAACACGTGGGCAGAGTTTCGAGACTACTTCAAAAAACAGGAAGGAGAAAAACGGCTGCTAGCATTTACAAAGAGAGGGACTACACTCCACTCGGATTTTTCGTACAAGCAGGGCGATTACTTGTTGTTCAGGTCGGAAACTAGTGGGTTACCAGCTGAAGCTCTTGAGGATTGCAAGAACCAGGCATTTGGTGGGGGGACCTTAAGAATTCCAATGGTTGAAACTTATGTTAGATGCCTAAATCTTTCTGTAAGTGTTGGCATTGCTATATATGAAGCTTCACGACAACTAAATTACCAGCAACTTCAGATTGAACCAGAGGGTTGTACCAACAACAATGAACAGTCTATCATTACAGAGGATCTTTTTGCTTGA

Protein sequence

MPLMDTTATTLRTLHPFSPFLLRSSTSHRLLRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYVVVKIHNTWAEFRDYFKKQEGEKRLLAFTKRGTTLHSDFSYKQGDYLLFRSETSGLPAEALEDCKNQAFGGGTLRIPMVETYVRCLNLSVSVGIAIYEASRQLNYQQLQIEPEGCTNNNEQSIITEDLFA

Homology

[Close]

BLAST of CmaCh08G005400 vs. ExPASy Swiss-Prot
Match: P74516 (Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr0992 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.4e-33
Identity = 78/157 (49.68%), Postives = 104/157 (66.24%), Query Frame = 0


Query: 87  VLQVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYVVVKIH 146
           ++++VLV+P IP NTG+IARTCAA+   LHLVGPLGF++ D  LKRAGLDYWPYV +  H
Sbjct: 1   MVKLVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFELGDRYLKRAGLDYWPYVDLHYH 60

Query: 147 NTWAEFRDYFKKQEGEKRLLAFTKRGTTLHSDFSYKQGDYLLFRSETSGLPAEALEDCKN 206
           N+  EF  +++ Q G   LL F+  GT    D++Y+  D+L+  SET GLP + + D   
Sbjct: 61  NSCEEFITHWRGQGG--NLLGFSVTGTVNFWDYTYQSTDWLMMGSETDGLP-QMMRDLST 120

Query: 207 QAFGGGTLRIPMVETYVRCLNLSVSVGIAIYEASRQL 244
           Q      L IPM  + VR LNL+ S  IA++EA RQL
Sbjct: 121 Q-----LLCIPMPHSEVRSLNLASSAAIALFEAGRQL 149

[Close]

BLAST of CmaCh08G005400 vs. ExPASy Swiss-Prot
Match: O31590 (Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Bacillus subtilis (strain 168) OX=224308 GN=cspR PE=3 SV=2)

HSP 1 Score: 131.0 bits (328), Expect = 2.1e-29
Identity = 75/165 (45.45%), Postives = 99/165 (60.00%), Query Frame = 0


Query: 88  LQVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYVVVKIHN 147
           L VVL  P IP NTG+IARTCAA+   LHL+ PLGF  DD  LKRAGLDYW +V V  H+
Sbjct: 6   LHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHD 65

Query: 148 TWAEFRDYFKKQEGEKRLLAFTKRGTTLHSDFSYKQGD---YLLFRSETSGLPAEALEDC 207
           +  E  + +KK     +    TK G   H+ F Y   D   + +F  ETSGLP + +++ 
Sbjct: 66  SLEELFEAYKK----GKFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQNN 125

Query: 208 KNQAFGGGTLRIPMVETYVRCLNLSVSVGIAIYEASRQLNYQQLQ 250
            ++      LR+PM E +VR LNLS +  I +YEA RQ NY+ L+
Sbjct: 126 MDRC-----LRLPMTE-HVRSLNLSNTAAILVYEALRQQNYRDLK 160

[Close]

BLAST of CmaCh08G005400 vs. ExPASy Swiss-Prot
Match: P0AGJ8 (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=trmL PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-28
Identity = 70/159 (44.03%), Postives = 94/159 (59.12%), Query Frame = 0


Query: 87  VLQVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYVVVKIH 146
           +L +VL  P IP NTG+I R CA +   LH++ P+GF  DD +L+RAGLDY  +  V  H
Sbjct: 1   MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60

Query: 147 NTWAEFRDYFKKQEGEKRLLAFTKRGTTLHSDFSYKQGDYLLFRSETSGLPAEALEDCKN 206
           + +  F +     E  +RL A T +GT  HS  SY+ GDYL+F  ET GLPA  L+    
Sbjct: 61  HDYRAFLE----AENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPA 120

Query: 207 QAFGGGTLRIPMVETYVRCLNLSVSVGIAIYEASRQLNY 246
           +      +RIPMV    R +NLS +V + +YEA RQL Y
Sbjct: 121 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150

[Close]

BLAST of CmaCh08G005400 vs. ExPASy Swiss-Prot
Match: P0AGJ7 (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Escherichia coli (strain K12) OX=83333 GN=trmL PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-28
Identity = 70/159 (44.03%), Postives = 94/159 (59.12%), Query Frame = 0


Query: 87  VLQVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYVVVKIH 146
           +L +VL  P IP NTG+I R CA +   LH++ P+GF  DD +L+RAGLDY  +  V  H
Sbjct: 1   MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60

Query: 147 NTWAEFRDYFKKQEGEKRLLAFTKRGTTLHSDFSYKQGDYLLFRSETSGLPAEALEDCKN 206
           + +  F +     E  +RL A T +GT  HS  SY+ GDYL+F  ET GLPA  L+    
Sbjct: 61  HDYRAFLE----AENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPA 120

Query: 207 QAFGGGTLRIPMVETYVRCLNLSVSVGIAIYEASRQLNY 246
           +      +RIPMV    R +NLS +V + +YEA RQL Y
Sbjct: 121 EQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150

[Close]

BLAST of CmaCh08G005400 vs. ExPASy Swiss-Prot
Match: Q74Y93 (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Yersinia pestis OX=632 GN=trmL PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.3e-28
Identity = 73/160 (45.62%), Postives = 94/160 (58.75%), Query Frame = 0


Query: 87  VLQVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYVVVKIH 146
           +L +VL  P IP NTG+I R CA +   LHL+ PLGF  DD +L+RAGLDY  +  +K H
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHH 60

Query: 147 NTWAEFRDYFKKQEGE-KRLLAFTKRGTTLHSDFSYKQGDYLLFRSETSGLPAEALEDCK 206
           + +  F D  K    +  RL A T +GT  HS  SY+  DYLLF  ET GLPA  L+   
Sbjct: 61  HDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALP 120

Query: 207 NQAFGGGTLRIPMVETYVRCLNLSVSVGIAIYEASRQLNY 246
            Q      +RIPM +   R +NLS +V + +YEA RQL Y
Sbjct: 121 AQQ----KIRIPM-QADSRSMNLSNAVSVVVYEAWRQLGY 155

[Close]

BLAST of CmaCh08G005400 vs. TAIR 10
Match: AT5G26880.2 (AGAMOUS-like 26 )

HSP 1 Score: 312.4 bits (799), Expect = 3.6e-85
Identity = 161/256 (62.89%), Postives = 197/256 (76.95%), Query Frame = 0


Query: 20  FLLRSSTSHRLLRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGS-----LPRG 79
           F LRS  S RL  +   +H   K     +S S ++    S + +G G   S     LPRG
Sbjct: 14  FHLRS--SGRLFPSLSLTHLKGKLSLSINSFSSKIQ---SHALRGVGIGESDKKNPLPRG 73

Query: 80  VGEALNGVSQQKVLQVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAG 139
            GE +   ++ K+L VVLVSP IPGNTG IARTCAASAVGLHLVGPLGF+VDD ++KRAG
Sbjct: 74  AGEGVKEDARSKLLHVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDARVKRAG 133

Query: 140 LDYWPYVVVKIHNTWAEFRDYFKKQEGEKRLLAFTKRGTTLHSDFSYKQGDYLLFRSETS 199
           LDYWP+VVVK H++WAEF++YF+ QEGEKR++AFTKRGT +HSDFSY+ GDYLLF SETS
Sbjct: 134 LDYWPFVVVKAHSSWAEFQEYFRLQEGEKRMIAFTKRGTRIHSDFSYRSGDYLLFGSETS 193

Query: 200 GLPAEALEDCKNQAFGGGTLRIPMVETYVRCLNLSVSVGIAIYEASRQLNYQQLQIEPEG 259
           GLP EAL DC ++ +GGGTLRIPMVETYVRCLNLSVSVGIA+YEASRQLNY+Q++  P+G
Sbjct: 194 GLPPEALSDCNHEPYGGGTLRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQIECAPQG 253

Query: 260 CTNNNEQSIITEDLFA 271
           C  N E+ ++TED+FA
Sbjct: 254 CV-NGEEPLLTEDIFA 263

[Close]

BLAST of CmaCh08G005400 vs. TAIR 10
Match: AT5G26880.1 (AGAMOUS-like 26 )

HSP 1 Score: 259.6 bits (662), Expect = 2.8e-69
Identity = 135/216 (62.50%), Postives = 163/216 (75.46%), Query Frame = 0


Query: 20  FLLRSSTSHRLLRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGS-----LPRG 79
           F LRS  S RL  +   +H   K     +S S ++    S + +G G   S     LPRG
Sbjct: 14  FHLRS--SGRLFPSLSLTHLKGKLSLSINSFSSKIQ---SHALRGVGIGESDKKNPLPRG 73

Query: 80  VGEALNGVSQQKVLQVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAG 139
            GE +   ++ K+L VVLVSP IPGNTG IARTCAASAVGLHLVGPLGF+VDD ++KRAG
Sbjct: 74  AGEGVKEDARSKLLHVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDARVKRAG 133

Query: 140 LDYWPYVVVKIHNTWAEFRDYFKKQEGEKRLLAFTKRGTTLHSDFSYKQGDYLLFRSETS 199
           LDYWP+VVVK H++WAEF++YF+ QEGEKR++AFTKRGT +HSDFSY+ GDYLLF SETS
Sbjct: 134 LDYWPFVVVKAHSSWAEFQEYFRLQEGEKRMIAFTKRGTRIHSDFSYRSGDYLLFGSETS 193

Query: 200 GLPAEALEDCKNQAFGGGTLRIPMVETYVRCLNLSV 231
           GLP EAL DC ++ +GGGTLRIPMVETYVRCLNLS+
Sbjct: 194 GLPPEALSDCNHEPYGGGTLRIPMVETYVRCLNLSI 224

The following BLAST results are available for this feature:

BLAST of CmaCh08G005400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P74516	2.4e-33	49.68	Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Synechocystis sp. (strain...	[more]
O31590	2.1e-29	45.45	Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Bacillus subtilis (strain...	[more]
P0AGJ8	1.4e-28	44.03	tRNA (cytidine(34)-2'-O)-methyltransferase OS=Escherichia coli O6:H1 (strain CFT...	[more]
P0AGJ7	1.4e-28	44.03	tRNA (cytidine(34)-2'-O)-methyltransferase OS=Escherichia coli (strain K12) OX=8...	[more]
Q74Y93	2.3e-28	45.63	tRNA (cytidine(34)-2'-O)-methyltransferase OS=Yersinia pestis OX=632 GN=trmL PE=...	[more]

BLAST of CmaCh08G005400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26880.2	3.6e-85	62.89	AGAMOUS-like 26	[more]
AT5G26880.1	2.8e-69	62.50	AGAMOUS-like 26	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029026	tRNA (guanine-N1-)-methyltransferase, N-terminal	GENE3D	3.40.1280.10		coord: 80..251 e-value: 6.2E-41 score: 142.0
IPR001537	tRNA/rRNA methyltransferase, SpoU type	PFAM	PF00588	SpoU_methylase	coord: 88..237 e-value: 4.6E-28 score: 98.2
None	No IPR available	PIRSR	PIRSR029256-1	PIRSR029256-1	coord: 88..245 e-value: 8.1E-44 score: 146.6
IPR016914	tRNA (cytidine/uridine-2'-O-)-methyltransferase	PANTHER	PTHR42971	TRNA (CYTIDINE(34)-2'-O)-METHYLTRANSFERASE	coord: 4..268
IPR016914	tRNA (cytidine/uridine-2'-O-)-methyltransferase	HAMAP	MF_01885	tRNA_methyltr_TrmL	coord: 88..246 score: 30.815498
IPR016914	tRNA (cytidine/uridine-2'-O-)-methyltransferase	CDD	cd18094	SpoU-like_TrmL	coord: 89..243 e-value: 3.53554E-77 score: 228.876
IPR029028	Alpha/beta knot methyltransferases	SUPERFAMILY	75217	alpha/beta knot	coord: 88..248

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G005400.1	CmaCh08G005400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002131	wobble position cytosine ribose methylation
biological_process	GO:0002132	wobble position uridine ribose methylation
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006396	RNA processing
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008173	RNA methyltransferase activity
molecular_function	GO:0008168	methyltransferase activity