CmaCh08G005390 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G005390
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein gamma response 1
Location	Cma_Chr08: 3108586 .. 3111502 (+)
RNA-Seq Expression	CmaCh08G005390
Synteny	CmaCh08G005390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGTCGAAGTGAAATCTCAAAAGGTATTTCTTCCATTTTCCTTTTCAGTACTGTCAGTTTATTTCTTGACGTTTTTGCATTTTCGTATATTCTCCGTTCATTCTCATCTTCCCCGATTTCTGTTCAATCGACTCAATGTATTACCAATCCACCATGAAGTTTGAATTATCTTGCTGCATTTTAGTTGCCAGCCGTTCTATATGAAATCCTGTTCTTCCGCTTTTGTGATTTCGAACTCTAATATGCATGCACATTGTTCTTTCGAGTTGTTCTGGAGAGGAATTCTTCGTTTGTACTTTCGTCTTTCCTGTTTGGATTGTGCGATTTTTCTTTAATTTTTCCAAGTTTTTATTATCGTCATTTGTAATTACTGTTTTAATTAAATGAAATTTATGAAATAAGCCGAACTTTGCAGAGTGTTGAGCTTGCTGCGGTTTGTATGCTTACAAGCATGTAGTTTATGCTACGATTTCTAATCTCTATGTTACCAACACCACTGCCTAAACGTGTTTAGCATAACAGACCAAGTTAGAGTTTCCCCTTCTAATAGCTGAAATAAAAGCGGGATTTGACATATAATTACGAAACCTAGGACAATCTTCATCAAAATAAGCGAAAATTCGGTGGCATAATGTATGGGGTGTTTAGGGATTCATCAGTTTTATGGGAAACTTTTACCTTGGTCAATATAGTTATGTTTTTCCTCTTGCAATGCGGATTTTAGCGTAAGTTTCTTTGTTCTTATTATTGTTTTCTTCAATAATTGAGACGGTTTTCAATATTTTCCCCCTTTTTTATTTTATATTGTTTCAGATATGGAGGCTGACCAAGATCACCTTCTTAAACTTGGGGGGTCCTCTGTTGAAGGCGATGATTTAAAGTACATCTCTGGGCTTAGCACTATTCTGGTTGCGACAATCCAGGAAACAAAAGACAGGATATCCCAAATAGAATATATCTTCTGCAGCCAGCTCTTTCCCAGTTTTCAAACGAAGTCTAAAAGCTTGCAAAAAGTATATTCTGAGGCTAGGAAATATGCAGAGGATGCATGGAAAGAGAAAGAAACCAATCTCCTGTTCCAAATAGAAAAACTTAAGCGGGAAAATCAGCATGTCATTGAAGAGAATCAGTCTTTGAGACTTGAGAAAGACAAGCCATTTATGGAGCAAGAAGAAAGGATGGATTTACTGCGAACCAAACTACTGGATGAACAACTCAAAGTTGAGGAGCTATCACAGCAACTGAAACAGAAATCAAGAGAAATAGACGAGGGAATTGAATTGCAGCAGAAGTTACTTGAAATGGTACGGTCAAAAAGTTCTCTGATAATGAGCAAGGAGCAAAAGTTGAAAGAGCATGAAGACGAATCAAACGCATTGCGCTCCAAATTGACTAGCCTAGAGATAAAGTTTCATGAGCTCCAAAAGAAGCTTAATGAGAAAACAGATGAAGTATCTAAGGTTAAAAAGTTGGAAGAGAACTTGTTCAAAAAAATTGAATCACAAGCTTCAGAAATCATGAATATTGAGCAGATGAATAGTGATCAGCAAAAAGAGAAACAAATACTTATGATCAAGTTAGAAAAATTGCAGGAGAATGTCGATGGCCTACAGAAGGAACTTTTGAAGAAAACTGAAGAAATTGAAGGAGGAAGGAAACTGCAAACCAAGTTGAATGGTTCTCTGGAGAAAATCAATGACCTTAAGTCGATTTCGAGGGTAAAGAATGAGGAAATGGAAGGAAATGAATCATATGAAAGTTTACGCCAACAGATTGAGTTAAAATCCTGCGAGTTACTGGCTGAAAAGAAGGCAAAGAAAGGCGTTGTTGATGCATACAAAAGGCTGAAATCACAATATAACTTCCTTTGCAAAAAATCTGGCCTTACTAGCGATAATATGCTGCTAAAAAACAGAAGAGAGAGTGAAACTGATTCAATGGCTGATCACAATCAAGGCCTTGCTTCTTCACCAGGTACACGCCCTTTCTTTATATTATAAACACAATTCTGTTTTCTCAAACGCTGTCATCCATATCCCATTATTAATTATGTATTGATTGGAGCAGTCGATCCTGATGCGGAAACTGAAGAACCTTTTATGGGTGTCTCTGATACATGCCATTTGAAGAAAGCGATAAGCGTGCACAATAATATAGAGGGAAAAAAGGGAGTCGAGTCAAATCAGGCCTCAAACTCCCGTTGCCCTCCTAAAATTCCCAGTTTTCCAAGTGGCTCAAAACGTAGCCCCAATGTAAAATCTGCACCAGTAGCTTCCAAAAGACCAGCATCTTATTGGAGAGATACCAGAACTCATCATCAAGCACAGGCAGGACCTGACCCACATGATGATTTTCTTGATACTCCATTGGAGAACATCAGAGAGAACTTAAACAAGCCTGTAAAGGACAGAGTTAATGATCTTCCTCTTCCTGAGGTGGCTGTCAAAGACATCAACATGGATGGGTCAGACGACGAGACACAGGATATGAATGCTGGTAATCCACCAGAAAATCAGCAGATGCCAGTTTCGGTGAGTGGCAATAGTGGAGGCTTTAAGTTTGTGGAGCCAGTAAGAAAGAAAGCCGACAGGCAAAATTTAAAAGGAATGGAATGCAAGCAATGCAAGAAGTTTTATGATGCGGTTCTTCCAGATGATGGCAATGAAGAAACTAATGATGATAATAAGCGGGGTTTACGATGTGAACATCATCATGGGGTTTCGAGGCATCGATATAGGTACGCTCCTCCCATGACTCCTGAAGGATTTTGGAATATTGGATTTGAATCTGAAATGTAATTGTAGTGTAGGATACTGAAATTGCCGAGTATGCTCATTGTTTGATACTTAATAATTGCCGAGTATACTTGTTTGATATTTAATAATTAAGAAGATTTGTAACCATCTAAGCTAGGCGG

mRNA sequence

AGGTCGAAGTGAAATCTCAAAAGATATGGAGGCTGACCAAGATCACCTTCTTAAACTTGGGGGGTCCTCTGTTGAAGGCGATGATTTAAAGTACATCTCTGGGCTTAGCACTATTCTGGTTGCGACAATCCAGGAAACAAAAGACAGGATATCCCAAATAGAATATATCTTCTGCAGCCAGCTCTTTCCCAGTTTTCAAACGAAGTCTAAAAGCTTGCAAAAAGTATATTCTGAGGCTAGGAAATATGCAGAGGATGCATGGAAAGAGAAAGAAACCAATCTCCTGTTCCAAATAGAAAAACTTAAGCGGGAAAATCAGCATGTCATTGAAGAGAATCAGTCTTTGAGACTTGAGAAAGACAAGCCATTTATGGAGCAAGAAGAAAGGATGGATTTACTGCGAACCAAACTACTGGATGAACAACTCAAAGTTGAGGAGCTATCACAGCAACTGAAACAGAAATCAAGAGAAATAGACGAGGGAATTGAATTGCAGCAGAAGTTACTTGAAATGGTACGGTCAAAAAGTTCTCTGATAATGAGCAAGGAGCAAAAGTTGAAAGAGCATGAAGACGAATCAAACGCATTGCGCTCCAAATTGACTAGCCTAGAGATAAAGTTTCATGAGCTCCAAAAGAAGCTTAATGAGAAAACAGATGAAGTATCTAAGGTTAAAAAGTTGGAAGAGAACTTGTTCAAAAAAATTGAATCACAAGCTTCAGAAATCATGAATATTGAGCAGATGAATAGTGATCAGCAAAAAGAGAAACAAATACTTATGATCAAGTTAGAAAAATTGCAGGAGAATGTCGATGGCCTACAGAAGGAACTTTTGAAGAAAACTGAAGAAATTGAAGGAGGAAGGAAACTGCAAACCAAGTTGAATGGTTCTCTGGAGAAAATCAATGACCTTAAGTCGATTTCGAGGGTAAAGAATGAGGAAATGGAAGGAAATGAATCATATGAAAGTTTACGCCAACAGATTGAGTTAAAATCCTGCGAGTTACTGGCTGAAAAGAAGGCAAAGAAAGGCGTTGTTGATGCATACAAAAGGCTGAAATCACAATATAACTTCCTTTGCAAAAAATCTGGCCTTACTAGCGATAATATGCTGCTAAAAAACAGAAGAGAGAGTGAAACTGATTCAATGGCTGATCACAATCAAGGCCTTGCTTCTTCACCAGTCGATCCTGATGCGGAAACTGAAGAACCTTTTATGGGTGTCTCTGATACATGCCATTTGAAGAAAGCGATAAGCGTGCACAATAATATAGAGGGAAAAAAGGGAGTCGAGTCAAATCAGGCCTCAAACTCCCGTTGCCCTCCTAAAATTCCCAGTTTTCCAAGTGGCTCAAAACGTAGCCCCAATGTAAAATCTGCACCAGTAGCTTCCAAAAGACCAGCATCTTATTGGAGAGATACCAGAACTCATCATCAAGCACAGGCAGGACCTGACCCACATGATGATTTTCTTGATACTCCATTGGAGAACATCAGAGAGAACTTAAACAAGCCTGTAAAGGACAGAGTTAATGATCTTCCTCTTCCTGAGGTGGCTGTCAAAGACATCAACATGGATGGGTCAGACGACGAGACACAGGATATGAATGCTGGTAATCCACCAGAAAATCAGCAGATGCCAGTTTCGGTGAGTGGCAATAGTGGAGGCTTTAAGTTTGTGGAGCCAGTAAGAAAGAAAGCCGACAGGCAAAATTTAAAAGGAATGGAATGCAAGCAATGCAAGAAGTTTTATGATGCGGTTCTTCCAGATGATGGCAATGAAGAAACTAATGATGATAATAAGCGGGGTTTACGATGTGAACATCATCATGGGGTTTCGAGGCATCGATATAGGTACGCTCCTCCCATGACTCCTGAAGGATTTTGGAATATTGGATTTGAATCTGAAATGTAATTGTAGTGTAGGATACTGAAATTGCCGAGTATGCTCATTGTTTGATACTTAATAATTGCCGAGTATACTTGTTTGATATTTAATAATTAAGAAGATTTGTAACCATCTAAGCTAGGCGG

Coding sequence (CDS)

ATGGAGGCTGACCAAGATCACCTTCTTAAACTTGGGGGGTCCTCTGTTGAAGGCGATGATTTAAAGTACATCTCTGGGCTTAGCACTATTCTGGTTGCGACAATCCAGGAAACAAAAGACAGGATATCCCAAATAGAATATATCTTCTGCAGCCAGCTCTTTCCCAGTTTTCAAACGAAGTCTAAAAGCTTGCAAAAAGTATATTCTGAGGCTAGGAAATATGCAGAGGATGCATGGAAAGAGAAAGAAACCAATCTCCTGTTCCAAATAGAAAAACTTAAGCGGGAAAATCAGCATGTCATTGAAGAGAATCAGTCTTTGAGACTTGAGAAAGACAAGCCATTTATGGAGCAAGAAGAAAGGATGGATTTACTGCGAACCAAACTACTGGATGAACAACTCAAAGTTGAGGAGCTATCACAGCAACTGAAACAGAAATCAAGAGAAATAGACGAGGGAATTGAATTGCAGCAGAAGTTACTTGAAATGGTACGGTCAAAAAGTTCTCTGATAATGAGCAAGGAGCAAAAGTTGAAAGAGCATGAAGACGAATCAAACGCATTGCGCTCCAAATTGACTAGCCTAGAGATAAAGTTTCATGAGCTCCAAAAGAAGCTTAATGAGAAAACAGATGAAGTATCTAAGGTTAAAAAGTTGGAAGAGAACTTGTTCAAAAAAATTGAATCACAAGCTTCAGAAATCATGAATATTGAGCAGATGAATAGTGATCAGCAAAAAGAGAAACAAATACTTATGATCAAGTTAGAAAAATTGCAGGAGAATGTCGATGGCCTACAGAAGGAACTTTTGAAGAAAACTGAAGAAATTGAAGGAGGAAGGAAACTGCAAACCAAGTTGAATGGTTCTCTGGAGAAAATCAATGACCTTAAGTCGATTTCGAGGGTAAAGAATGAGGAAATGGAAGGAAATGAATCATATGAAAGTTTACGCCAACAGATTGAGTTAAAATCCTGCGAGTTACTGGCTGAAAAGAAGGCAAAGAAAGGCGTTGTTGATGCATACAAAAGGCTGAAATCACAATATAACTTCCTTTGCAAAAAATCTGGCCTTACTAGCGATAATATGCTGCTAAAAAACAGAAGAGAGAGTGAAACTGATTCAATGGCTGATCACAATCAAGGCCTTGCTTCTTCACCAGTCGATCCTGATGCGGAAACTGAAGAACCTTTTATGGGTGTCTCTGATACATGCCATTTGAAGAAAGCGATAAGCGTGCACAATAATATAGAGGGAAAAAAGGGAGTCGAGTCAAATCAGGCCTCAAACTCCCGTTGCCCTCCTAAAATTCCCAGTTTTCCAAGTGGCTCAAAACGTAGCCCCAATGTAAAATCTGCACCAGTAGCTTCCAAAAGACCAGCATCTTATTGGAGAGATACCAGAACTCATCATCAAGCACAGGCAGGACCTGACCCACATGATGATTTTCTTGATACTCCATTGGAGAACATCAGAGAGAACTTAAACAAGCCTGTAAAGGACAGAGTTAATGATCTTCCTCTTCCTGAGGTGGCTGTCAAAGACATCAACATGGATGGGTCAGACGACGAGACACAGGATATGAATGCTGGTAATCCACCAGAAAATCAGCAGATGCCAGTTTCGGTGAGTGGCAATAGTGGAGGCTTTAAGTTTGTGGAGCCAGTAAGAAAGAAAGCCGACAGGCAAAATTTAAAAGGAATGGAATGCAAGCAATGCAAGAAGTTTTATGATGCGGTTCTTCCAGATGATGGCAATGAAGAAACTAATGATGATAATAAGCGGGGTTTACGATGTGAACATCATCATGGGGTTTCGAGGCATCGATATAGGTACGCTCCTCCCATGACTCCTGAAGGATTTTGGAATATTGGATTTGAATCTGAAATGTAA

Protein sequence

MEADQDHLLKLGGSSVEGDDLKYISGLSTILVATIQETKDRISQIEYIFCSQLFPSFQTKSKSLQKVYSEARKYAEDAWKEKETNLLFQIEKLKRENQHVIEENQSLRLEKDKPFMEQEERMDLLRTKLLDEQLKVEELSQQLKQKSREIDEGIELQQKLLEMVRSKSSLIMSKEQKLKEHEDESNALRSKLTSLEIKFHELQKKLNEKTDEVSKVKKLEENLFKKIESQASEIMNIEQMNSDQQKEKQILMIKLEKLQENVDGLQKELLKKTEEIEGGRKLQTKLNGSLEKINDLKSISRVKNEEMEGNESYESLRQQIELKSCELLAEKKAKKGVVDAYKRLKSQYNFLCKKSGLTSDNMLLKNRRESETDSMADHNQGLASSPVDPDAETEEPFMGVSDTCHLKKAISVHNNIEGKKGVESNQASNSRCPPKIPSFPSGSKRSPNVKSAPVASKRPASYWRDTRTHHQAQAGPDPHDDFLDTPLENIRENLNKPVKDRVNDLPLPEVAVKDINMDGSDDETQDMNAGNPPENQQMPVSVSGNSGGFKFVEPVRKKADRQNLKGMECKQCKKFYDAVLPDDGNEETNDDNKRGLRCEHHHGVSRHRYRYAPPMTPEGFWNIGFESEM

Homology

[Close]

BLAST of CmaCh08G005390 vs. ExPASy Swiss-Prot
Match: Q9ZRT1 (Protein gamma response 1 OS=Arabidopsis thaliana OX=3702 GN=GR1 PE=1 SV=2)

HSP 1 Score: 358.6 bits (919), Expect = 1.4e-97
Identity = 270/642 (42.06%), Postives = 373/642 (58.10%), Query Frame = 0


Query: 11  LGGSSVEGDDLKYISGLSTILVATIQETKDRISQIEYIFCSQLFPSFQTKSKSLQKVYSE 70
           +G  +V+G + KYISGLSTI+VATIQE KDRISQIEYIFCSQLFP+FQ+KSK+ +KVYSE
Sbjct: 1   MGDETVDGIEAKYISGLSTIMVATIQEAKDRISQIEYIFCSQLFPNFQSKSKAFEKVYSE 60

Query: 71  ARKYAEDAWKEKETNLLFQIEKLKRENQHVIEENQSLRLEKDKPFMEQEERMDLLRTKLL 130
           AR  A D WK++E +LL QIE+LK ENQ +  + + L  E  K        M L  T L 
Sbjct: 61  ARLAACDTWKDREKSLLDQIEELKVENQQIKSDKEKLAEELGK-----TASMPLRLTSL- 120

Query: 131 DEQLKVEELSQQLKQKSREIDEGIELQQKLLEMVRSKSSLIMSKEQKLKEHEDESNALRS 190
             Q  ++ L +++K +S+ + +  +L  +L+E+++ K    +S        ED  N + S
Sbjct: 121 --QGYIDHLKKKMKSRSKMVGDARDLYYRLVELLQVKGLDELS--------EDGINMIVS 180

Query: 191 KLTSLEIKFHELQKKLNEKTDEVSKVKKLEENLFKKIESQASEIMNIEQMNSDQQKEKQI 250
           ++ SL++K   LQ++L++KT        + ENL KK+E  ++E  + E+  S  ++EKQ 
Sbjct: 181 EVKSLKMKTEFLQEELSKKT-------LVTENLLKKLEYLSTEAADGERKLSSVEEEKQR 240

Query: 251 LMIKLEKLQENVDGLQKELLKKTEEIEGGRKLQTKLNGSL-----------EKINDLKSI 310
           L  +L+  +ENV  L++ L +KT+E+E G+     L G L           +KI D +  
Sbjct: 241 LKTRLQVFEENVGRLEEILRQKTDEVEEGKTALEVLQGKLKLTEREMLNCKQKIADHEKE 300

Query: 311 SRV----KNEEMEGNE-SY----ESLRQQIELKSCELLAEKKAKKGVVDAYKRLKSQYNF 370
             V      ++M+G   SY    E+LR Q E KS EL  E K  K +    K+ KSQ+ F
Sbjct: 301 KTVVMGKAKDDMQGRHGSYLADLEALRCQSEEKSFELAMEIKKNKELSRTCKKWKSQHTF 360

Query: 371 LCKKSGLTSDNMLLKNRRESETDSMADHNQGLASSPVD-PDAETEEPFMGVSDTCHLKKA 430
           LCK+   T D++L ++  E E   +  H +   SS ++   +ET E     +D   +   
Sbjct: 361 LCKRFNFTPDSVLHQSSLEDENKEIGQHEKSAISSYLERKHSETAEG----ADKVRIGTG 420

Query: 431 ISVHNNIEGKKGVESNQASNSRCPPKIPSFPSGSKRSPNVKSAPVAS--KRPASYWRDTR 490
            S  NN E +  +++ Q   +   P +        RSP     P  S  KRPAS WRDTR
Sbjct: 421 -SSGNNYEKESIIKTVQTPITSISPIV--------RSPGAAKPPQLSGLKRPASIWRDTR 480

Query: 491 THHQAQAGPDPHDDFLDTPLENIRENLNKPVKDRVNDLPLPEVAVKDINMDGSDDETQDM 550
           +  Q+  G DPHDDFLDTP+EN++    +  +  V+D     VA K    D SDDETQDM
Sbjct: 481 S-RQSPGGHDPHDDFLDTPIENVKRVAGE--EKHVHD-----VAKK----DDSDDETQDM 540

Query: 551 NAGNPPENQQMPVSVSGNSGGFKFVEPVRKKADRQNLKGMECKQCKKFYDAVLPDDGNEE 610
           N    P  Q++ ++ +     FK VE VRKKA+R+NLKG+ECKQCKKFYDAV P     E
Sbjct: 541 NPKPSPSRQRIQIAETSKK-SFKHVESVRKKAERENLKGIECKQCKKFYDAVHP-----E 588

Query: 611 TNDDNKRGLRCEHHHGVSRHRYRYAPPMTPEGFWNIGFESEM 630
              +  + LRCEHH GVSRHRYRYAPPMTPEGFWNIGFESEM
Sbjct: 601 NEGNGNKSLRCEHHEGVSRHRYRYAPPMTPEGFWNIGFESEM 588

[Close]

BLAST of CmaCh08G005390 vs. ExPASy Swiss-Prot
Match: F1R983 (DNA endonuclease RBBP8 OS=Danio rerio OX=7955 GN=rbbp8 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.3e-10
Identity = 47/127 (37.01%), Postives = 65/127 (51.18%), Query Frame = 0


Query: 504 DLPLPEVAVKDINMDGSDDETQDMNAGNPPENQQMPVSVSGNSG---GFKFVEPVRKKAD 563
           DL    V  ++   D  +++ +       P +++  VS S  S     F  VE VRKK +
Sbjct: 497 DLKQDSVYEEEREEDDPEEKPEAAVVFRRPADRKPLVSDSDKSSRNKSFACVEVVRKKDE 556

Query: 564 RQNLKGMECKQCKKFYDAVLPDDGNEETNDDNKRGLRCEHHHGVSRHRYRYAPPMTPEGF 623
           R+ LKG  CK+C+ +Y A LP++  E      K+   C      SRHRYRY PP TPE F
Sbjct: 557 RRKLKGHYCKECEVYY-ADLPEEERE------KKLTSC------SRHRYRYIPPSTPENF 610

Query: 624 WNIGFES 628
           W +GF S
Sbjct: 617 WEVGFPS 610

[Close]

BLAST of CmaCh08G005390 vs. ExPASy Swiss-Prot
Match: H0YM25 (Golgin subfamily A member 6-like protein 22 OS=Homo sapiens OX=9606 GN=GOLGA6L22 PE=3 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-04
Identity = 62/247 (25.10%), Postives = 125/247 (50.61%), Query Frame = 0


Query: 65  QKVYSEARKYAEDAWK--EKETNLLFQIEKLKRENQHVIEENQSLRLEKDKPFMEQEERM 124
           +KV+ +  K  E   K  E+E  +  Q EK++ + + + E+ + +R E+++   EQEE M
Sbjct: 533 EKVWRQEEKIREQEEKRQEQEEKMWKQEEKIREQEEKIREQEEKIR-EQEEKIREQEEMM 592

Query: 125 DLLRTKLLDEQLKVEELSQQLKQ--KSREIDEGIELQQKLLEMVRSKSSLIMSKEQKLKE 184
                K+ +++ K++E  +  +Q  K RE +E I  Q+   E +R +   I  +E+K++E
Sbjct: 593 QEQEEKMGEQEEKMQEQEKMRRQEEKIREQEEKIREQK---EKIREQEEKIWEQEEKIRE 652

Query: 185 HEDESNALRSKLTSLEIKFHELQKKLNEKTDEVSKVKKLEENLFKKIESQASEIMNIEQM 244
            E+       K+   E K  E ++K+ E+ +++ + ++      KKI  Q  +I   E+M
Sbjct: 653 QEEMMQEQEEKMGEQEEKIWEQEEKMQEQEEKMRRQEEKIREQEKKIREQEEKIREQEEM 712

Query: 245 NSDQQKEKQILMIKLEKLQENVDGLQKELLKKTEEIEGGRKLQTKLNGSLEKINDLKSIS 304
             +Q+          EK+ E  + +Q++  K   + E  R+ + K+    EKI + + + 
Sbjct: 713 MQEQE----------EKMGEQEEKMQEQEEKMRRQEEKIREQEKKIREQEEKIREQEEMM 765

Query: 305 RVKNEEM 308
           + + E+M
Sbjct: 773 QEQEEKM 765

[Close]

BLAST of CmaCh08G005390 vs. TAIR 10
Match: AT3G52115.1 (gamma response gene 1 )

HSP 1 Score: 358.6 bits (919), Expect = 1.0e-98
Identity = 270/642 (42.06%), Postives = 373/642 (58.10%), Query Frame = 0


Query: 11  LGGSSVEGDDLKYISGLSTILVATIQETKDRISQIEYIFCSQLFPSFQTKSKSLQKVYSE 70
           +G  +V+G + KYISGLSTI+VATIQE KDRISQIEYIFCSQLFP+FQ+KSK+ +KVYSE
Sbjct: 1   MGDETVDGIEAKYISGLSTIMVATIQEAKDRISQIEYIFCSQLFPNFQSKSKAFEKVYSE 60

Query: 71  ARKYAEDAWKEKETNLLFQIEKLKRENQHVIEENQSLRLEKDKPFMEQEERMDLLRTKLL 130
           AR  A D WK++E +LL QIE+LK ENQ +  + + L  E  K        M L  T L 
Sbjct: 61  ARLAACDTWKDREKSLLDQIEELKVENQQIKSDKEKLAEELGK-----TASMPLRLTSL- 120

Query: 131 DEQLKVEELSQQLKQKSREIDEGIELQQKLLEMVRSKSSLIMSKEQKLKEHEDESNALRS 190
             Q  ++ L +++K +S+ + +  +L  +L+E+++ K    +S        ED  N + S
Sbjct: 121 --QGYIDHLKKKMKSRSKMVGDARDLYYRLVELLQVKGLDELS--------EDGINMIVS 180

Query: 191 KLTSLEIKFHELQKKLNEKTDEVSKVKKLEENLFKKIESQASEIMNIEQMNSDQQKEKQI 250
           ++ SL++K   LQ++L++KT        + ENL KK+E  ++E  + E+  S  ++EKQ 
Sbjct: 181 EVKSLKMKTEFLQEELSKKT-------LVTENLLKKLEYLSTEAADGERKLSSVEEEKQR 240

Query: 251 LMIKLEKLQENVDGLQKELLKKTEEIEGGRKLQTKLNGSL-----------EKINDLKSI 310
           L  +L+  +ENV  L++ L +KT+E+E G+     L G L           +KI D +  
Sbjct: 241 LKTRLQVFEENVGRLEEILRQKTDEVEEGKTALEVLQGKLKLTEREMLNCKQKIADHEKE 300

Query: 311 SRV----KNEEMEGNE-SY----ESLRQQIELKSCELLAEKKAKKGVVDAYKRLKSQYNF 370
             V      ++M+G   SY    E+LR Q E KS EL  E K  K +    K+ KSQ+ F
Sbjct: 301 KTVVMGKAKDDMQGRHGSYLADLEALRCQSEEKSFELAMEIKKNKELSRTCKKWKSQHTF 360

Query: 371 LCKKSGLTSDNMLLKNRRESETDSMADHNQGLASSPVD-PDAETEEPFMGVSDTCHLKKA 430
           LCK+   T D++L ++  E E   +  H +   SS ++   +ET E     +D   +   
Sbjct: 361 LCKRFNFTPDSVLHQSSLEDENKEIGQHEKSAISSYLERKHSETAEG----ADKVRIGTG 420

Query: 431 ISVHNNIEGKKGVESNQASNSRCPPKIPSFPSGSKRSPNVKSAPVAS--KRPASYWRDTR 490
            S  NN E +  +++ Q   +   P +        RSP     P  S  KRPAS WRDTR
Sbjct: 421 -SSGNNYEKESIIKTVQTPITSISPIV--------RSPGAAKPPQLSGLKRPASIWRDTR 480

Query: 491 THHQAQAGPDPHDDFLDTPLENIRENLNKPVKDRVNDLPLPEVAVKDINMDGSDDETQDM 550
           +  Q+  G DPHDDFLDTP+EN++    +  +  V+D     VA K    D SDDETQDM
Sbjct: 481 S-RQSPGGHDPHDDFLDTPIENVKRVAGE--EKHVHD-----VAKK----DDSDDETQDM 540

Query: 551 NAGNPPENQQMPVSVSGNSGGFKFVEPVRKKADRQNLKGMECKQCKKFYDAVLPDDGNEE 610
           N    P  Q++ ++ +     FK VE VRKKA+R+NLKG+ECKQCKKFYDAV P     E
Sbjct: 541 NPKPSPSRQRIQIAETSKK-SFKHVESVRKKAERENLKGIECKQCKKFYDAVHP-----E 588

Query: 611 TNDDNKRGLRCEHHHGVSRHRYRYAPPMTPEGFWNIGFESEM 630
              +  + LRCEHH GVSRHRYRYAPPMTPEGFWNIGFESEM
Sbjct: 601 NEGNGNKSLRCEHHEGVSRHRYRYAPPMTPEGFWNIGFESEM 588

The following BLAST results are available for this feature:

BLAST of CmaCh08G005390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZRT1	1.4e-97	42.06	Protein gamma response 1 OS=Arabidopsis thaliana OX=3702 GN=GR1 PE=1 SV=2	[more]
F1R983	2.3e-10	37.01	DNA endonuclease RBBP8 OS=Danio rerio OX=7955 GN=rbbp8 PE=2 SV=1	[more]
H0YM25	1.1e-04	25.10	Golgin subfamily A member 6-like protein 22 OS=Homo sapiens OX=9606 GN=GOLGA6L22...	[more]

BLAST of CmaCh08G005390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52115.1	1.0e-98	42.06	gamma response gene 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 227..275
None	No IPR available	COILS	Coil	Coil	coord: 122..156
None	No IPR available	COILS	Coil	Coil	coord: 164..222
None	No IPR available	COILS	Coil	Coil	coord: 90..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 418..450
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 462..485
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 369..396
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 417..485
None	No IPR available	PANTHER	PTHR15107:SF0	COMPLETION OF MEIOTIC RECOMBINATION (BUDDING YEAST COM) RELATED	coord: 7..629
IPR013882	DNA endonuclease Ctp1, C-terminal	PFAM	PF08573	SAE2	coord: 602..625 e-value: 1.4E-4 score: 23.0
IPR033316	DNA endonuclease RBBP8-like	PANTHER	PTHR15107	RETINOBLASTOMA BINDING PROTEIN 8	coord: 7..629

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G005390.1	CmaCh08G005390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010792	DNA double-strand break processing involved in repair via single-strand annealing
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006281	DNA repair
cellular_component	GO:0005634	nucleus
cellular_component	GO:0035861	site of double-strand break
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0000406	double-strand/single-strand DNA junction binding
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0070336	flap-structured DNA binding
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0000403	Y-form DNA binding