CmaCh07G009680 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh07G009680
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Glycine rich RNA binding protein
Location	Cma_Chr07: 4685821 .. 4688308 (-)
RNA-Seq Expression	CmaCh07G009680
Synteny	CmaCh07G009680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAAGAACATCGTGTCCGGGGGAGGCCAAAAACCCTAACCCCTGAATATCATCTCTGTTGTAGCGTGGTTTTTCTCTTTTCTCATCGGCCGATCAAATCAGATGGCTTTCTTCTCCACTGTGAGGCGCGTTCTTAACGGTTCTTCCTCTTCTTCTTCCGTTCTCCGATCACAATGGACTTCTTTTCGTCTCAGCTCAACTCTCACATCGCCTAAGCTCTTCATCAGTGGTACGTTTCGCAGAAAAAAACAATCAGCTCGTAACGCCTTTTTTTTACCCCTTTGATTTTGTTAATTTCATCCATTTGGATATTGAGAATGATATGGTAATTTGGTATTAGGCTCTAATTTCTGTTTGGATGCTGGGAAATTTCTGAGATTGTTGCTCACGCTTTGTCTCCTATACTCAACCGAATAGTTTCGATCGGAGAAGTAAATGGATTAATCGTTAATCTATTATGCTCTGTTCTGTTCCATTTTTTGCACTTTATTTCTGGTATTTCTCTTCAAGTGGAAGGAAGCTTCTTTCCCTATTTGCACTTGTGAAATTACTTCGCACTTTAGTAAGTGGGGGGATTTGTTTTGGCGTATGGAATTGGACATTTATTCCGATTTTATGTGCCTGCTTGATGTCTCGAACAATTCTTGCATTGGAAAGTTCCAAGAAATCTTTGCTAATTCATGTTTATGCGACTCGATATGCGCTTTGCGTTTGAAGGTTTGCTATTTGACTGACAAACCTTGTAAGTACAATGGAGTACTAAAAATTTTTCCCTCCCCCCCATCCCATTGATAAACCTTCTCATTTCTGGGTTTCTATTTTTTTGTCTTCTTTCAGAGGGGTTTTTTCTTAGTACTATAGTGAACCTCCTCCATCTATCTCTTGAAGGATAAGATATTGTTCACGTTGGACATAAATGCTCGTCACATTACTTTTGGCTTTTTCAAAATGACTCGTACCAATGAAGATAATTGTAACGGCCCAAGCCCACTGCTAGCAGATATTGTCCTCTTTGGGTTTTCCCTTTCGAGTTTCTCTTCAAGGTTTTTAAATTGCATCTACTAAGGAGAGGTTTCCACTCCCATCTAAGACAATTTGGTCGAGTGATCTAAGGTGCAACTTTCTTTTCGGTGGCTCATTCTTGAAAACTCCAAAGTTAAGCGTGTTTTGTTTGGAATAATTTTATGTTGGGCCGTTACAAATGGTACAGAGCCAAACACTGAGAGGGGGTGGATACAAGGTGGTGTGCTAGCAAGGATGCTGGCCTTGAAGGGGGGTGAATTGAGGGGTCCCACATCAATTGGAGAAGGGAACGAGTGCCAGTGAGTACGTTAGACCCCGAAGGGGGTGGATTGTGAGATCCCACATCGGTTGGGGAGAAGAACGAAACATTCTTTCTAAAGGTGTGGAAACCTCTCTCTAGTAGACGCATTTTAAAAACCTTGAGAGGAAGCCCGAAAGGGAAAGTCCAAAGAGGACAATATCTTCTAACGGTGGGCTTGTGCTGTTATAATAATTGTCCTCCTTTAAATATCCATGACCACTCTCTTCCTTGGCCAATGTGGAAGTTTGTTTCATATCCTAACTGTTCTTATCCTTTCTTCACAATTTGAAGATTAGTAAGTGATATATTAGGTATGTTTCATTGGTCTACACTTTTCTTAAATGTTGTTATGGTAAACAAGTAGTTTAAAAATTATAGTAACAGAAAATTTTCTTGTTATGGTTGGATATTGAATGACCTCCACATGATATTTTTTCATAATCTAATATTCTTTATGAACTTGCATCAGCCTAAGTTTTGATTTGTGGCTGAGCCATGATGAACTGTTTGACCTGTTTTGGATTGGTTTCATTCTTATAAAATGCACAGGTCTTTCAAGATTAACAACAGATGAGAAGCTCCAGGAAGCCTTTACTTCCTTTGGTCAGCTTGTAGAAGGTCTAACTTTCTCTCCCTCTCTCAAATTTACAATTCCATGAACATCTGTTGCAGAGTGCACCATGTTGACACTGCCTCAACATTTGTACAGCAAAAGTTATAACCGATAGGGCAACGGGAAGATCAAAAGGGTTCGGGTTTGTAACGTACAGTACAATAGAAGAGGCTGAGAAAGCAAGAGAAGGAATGAATGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCGCCGCCTCCTCCACAGCCTCAATCTGCTGAGACCTCTGAATTTGGTATCAGGACAAACAAGACAATTGGTTGGTGTGGTTGATTGATTGCTTGCAAAATCTATATGAAACTTCATATGATTTTGGTTATTTTTTCATATTGTTCATCATCCATGGGTACTATAGTATGGATAAGTTTCATGAGACAATACCTTAGGAGCCTGAAAAGGGTAAATTTTTGTCATATGTATGGATTCAGAAAGAGGGGAAAGGAGCTTTTCATTAAAACTAAACATATTTAATTATTATTATTA

mRNA sequence

ATAAAGAACATCGTGTCCGGGGGAGGCCAAAAACCCTAACCCCTGAATATCATCTCTGTTGTAGCGTGGTTTTTCTCTTTTCTCATCGGCCGATCAAATCAGATGGCTTTCTTCTCCACTGTGAGGCGCGTTCTTAACGGTTCTTCCTCTTCTTCTTCCGTTCTCCGATCACAATGGACTTCTTTTCGTCTCAGCTCAACTCTCACATCGCCTAAGCTCTTCATCAGTGGTCTTTCAAGATTAACAACAGATGAGAAGCTCCAGGAAGCCTTTACTTCCTTTGGTCAGCTTGTAGAAGCAAAAGTTATAACCGATAGGGCAACGGGAAGATCAAAAGGGTTCGGGTTTGTAACGTACAGTACAATAGAAGAGGCTGAGAAAGCAAGAGAAGGAATGAATGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCGCCGCCTCCTCCACAGCCTCAATCTGCTGAGACCTCTGAATTTGGTATCAGGACAAACAAGACAATTGGTTGGTGTGGTTGATTGATTGCTTGCAAAATCTATATGAAACTTCATATGATTTTGGTTATTTTTTCATATTGTTCATCATCCATGGGTACTATAGTATGGATAAGTTTCATGAGACAATACCTTAGGAGCCTGAAAAGGGTAAATTTTTGTCATATGTATGGATTCAGAAAGAGGGGAAAGGAGCTTTTCATTAAAACTAAACATATTTAATTATTATTATTA

Coding sequence (CDS)

ATGGCTTTCTTCTCCACTGTGAGGCGCGTTCTTAACGGTTCTTCCTCTTCTTCTTCCGTTCTCCGATCACAATGGACTTCTTTTCGTCTCAGCTCAACTCTCACATCGCCTAAGCTCTTCATCAGTGGTCTTTCAAGATTAACAACAGATGAGAAGCTCCAGGAAGCCTTTACTTCCTTTGGTCAGCTTGTAGAAGCAAAAGTTATAACCGATAGGGCAACGGGAAGATCAAAAGGGTTCGGGTTTGTAACGTACAGTACAATAGAAGAGGCTGAGAAAGCAAGAGAAGGAATGAATGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCGCCGCCTCCTCCACAGCCTCAATCTGCTGAGACCTCTGAATTTGGTATCAGGACAAACAAGACAATTGGTTGGTGTGGTTGA

Protein sequence

MAFFSTVRRVLNGSSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPPPQPQSAETSEFGIRTNKTIGWCG

Homology

[Close]

BLAST of CmaCh07G009680 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-21
Identity = 59/133 (44.36%), Postives = 81/133 (60.90%), Query Frame = 0


Query: 7   VRRVLNGSSSSSSVLRSQWTSFRLSSTLTSP--KLFISGLSRLTTDEKLQEAFTSFGQLV 66
           +RR+   ++S  S L  Q  S   +     P   LF+SGLS+ TT E L+ AF  FG++ 
Sbjct: 24  LRRLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVA 83

Query: 67  EAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPPP 126
           +AKV+TDR +G SKGFGFV Y+T+E++ K   GM+ KFLDGWVIF + A+PRE      P
Sbjct: 84  DAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQP 143

Query: 127 QPQSAETSEFGIR 138
           Q   +    +G R
Sbjct: 144 QNNMSRPPYYGNR 156

[Close]

BLAST of CmaCh07G009680 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.3e-16
Identity = 53/133 (39.85%), Postives = 74/133 (55.64%), Query Frame = 0


Query: 8   RRVLNGSSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAK 67
           RR + G   SS +     +S   SS+    KL++SGLS  TT++ L++ F  FG L+   
Sbjct: 48  RRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMN 107

Query: 68  VITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDP---------AKPREP 127
           ++ D+   R KGF F+ Y T EEA KA +GM+ KFLDG VIFV+          AKPR  
Sbjct: 108 MVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRRD 167

Query: 128 RPPPPPQPQSAET 132
            P P  +P++  T
Sbjct: 168 FPKPQSKPRTFRT 180

[Close]

BLAST of CmaCh07G009680 vs. ExPASy Swiss-Prot
Match: Q9FZ84 (Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG6 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-15
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 33  TLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAE 92
           +LT  K+F+ GLS  T  E L+EAF SFG++V+A V+ DR +G S+GFGFVTY +IE A 
Sbjct: 32  SLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVAN 91

Query: 93  KAREGMNAKFLDGWVIFVDPA 114
            A + M  K LDG +I V PA
Sbjct: 92  NAMQAMQNKELDGRIIGVHPA 112

[Close]

BLAST of CmaCh07G009680 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.9e-15
Identity = 40/79 (50.63%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 38  KLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREG 97
           + F+ GL+  T +E L++AF +FGQ++++KVITDR TGRS+GFGFVT+S+ +    A E 
Sbjct: 9   RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68

Query: 98  MNAKFLDGWVIFVDPAKPR 117
           MN K LDG  I V+ A+ R
Sbjct: 69  MNGKELDGRNITVNQAQSR 87

[Close]

BLAST of CmaCh07G009680 vs. ExPASy Swiss-Prot
Match: C0HFE5 (Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=ORRM1 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.7e-14
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 34  LTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEK 93
           + + +LF++GLS  T+++ L+ AF  FG+LVE K+I DR + RSKG+ FV Y+T E    
Sbjct: 296 IKTKRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGA 355

Query: 94  AREGMNAKFLDGWVIFVDPAKPR 117
           A + MN + ++GW+I VD AK R
Sbjct: 356 ALKAMNGQIINGWMIVVDVAKTR 378

[Close]

BLAST of CmaCh07G009680 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 184.5 bits (467), Expect = 6.1e-47
Identity = 99/145 (68.28%), Postives = 116/145 (80.00%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60
           MAF S+ RR++ G   SSS+L S     R  STLTSP+LF+SGLSRLTT+EKLQ+AF SF
Sbjct: 1   MAFVSSFRRLVAG---SSSLLSSPSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASF 60

Query: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120
           GQLV+A+VITDR +GRSKGFGFVTY+TIE+AEKA+  MNAKFLDGWVIFVDPA+PREPR 
Sbjct: 61  GQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREPRR 120

Query: 121 PPPPQPQSAETSEFGIRTNKTIGWC 146
           P   +P    +SE G  TNKTIGWC
Sbjct: 121 PLQQEP-LRPSSESGFTTNKTIGWC 141

[Close]

BLAST of CmaCh07G009680 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-22
Identity = 59/133 (44.36%), Postives = 81/133 (60.90%), Query Frame = 0


Query: 7   VRRVLNGSSSSSSVLRSQWTSFRLSSTLTSP--KLFISGLSRLTTDEKLQEAFTSFGQLV 66
           +RR+   ++S  S L  Q  S   +     P   LF+SGLS+ TT E L+ AF  FG++ 
Sbjct: 24  LRRLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVA 83

Query: 67  EAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPPP 126
           +AKV+TDR +G SKGFGFV Y+T+E++ K   GM+ KFLDGWVIF + A+PRE      P
Sbjct: 84  DAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQP 143

Query: 127 QPQSAETSEFGIR 138
           Q   +    +G R
Sbjct: 144 QNNMSRPPYYGNR 156

[Close]

BLAST of CmaCh07G009680 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 84.7 bits (208), Expect = 6.6e-17
Identity = 53/133 (39.85%), Postives = 74/133 (55.64%), Query Frame = 0


Query: 8   RRVLNGSSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAK 67
           RR + G   SS +     +S   SS+    KL++SGLS  TT++ L++ F  FG L+   
Sbjct: 48  RRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMN 107

Query: 68  VITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDP---------AKPREP 127
           ++ D+   R KGF F+ Y T EEA KA +GM+ KFLDG VIFV+          AKPR  
Sbjct: 108 MVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRRD 167

Query: 128 RPPPPPQPQSAET 132
            P P  +P++  T
Sbjct: 168 FPKPQSKPRTFRT 180

[Close]

BLAST of CmaCh07G009680 vs. TAIR 10
Match: AT1G18630.1 (glycine-rich RNA-binding protein 6 )

HSP 1 Score: 83.2 bits (204), Expect = 1.9e-16
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 33  TLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAE 92
           +LT  K+F+ GLS  T  E L+EAF SFG++V+A V+ DR +G S+GFGFVTY +IE A 
Sbjct: 32  SLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVAN 91

Query: 93  KAREGMNAKFLDGWVIFVDPA 114
            A + M  K LDG +I V PA
Sbjct: 92  NAMQAMQNKELDGRIIGVHPA 112

[Close]

BLAST of CmaCh07G009680 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 82.4 bits (202), Expect = 3.3e-16
Identity = 43/105 (40.95%), Postives = 65/105 (61.90%), Query Frame = 0


Query: 36  SPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAR 95
           S +LF+S LS  TTD+ L++ F+ FGQ+ EA++I D  T R KGFGF+T+ + ++A KA 
Sbjct: 6   SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65

Query: 96  EGMNAKFLDGWVIFVDPAKPREPRPPPPPQPQSAETSEFGIRTNK 141
           + ++ K +DG +IFV+ AK             +AE    GI +NK
Sbjct: 66  KSLDGKIVDGRLIFVEVAK-------------NAEEVRAGINSNK 97

The following BLAST results are available for this feature:

BLAST of CmaCh07G009680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIU6	1.5e-21	44.36	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q9FX45	9.3e-16	39.85	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FZ84	2.7e-15	53.09	Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q99070	7.9e-15	50.63	Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1	[more]
C0HFE5	1.7e-14	45.78	Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=...	[more]

BLAST of CmaCh07G009680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37510.1	6.1e-47	68.28	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	1.0e-22	44.36	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	6.6e-17	39.85	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G18630.1	1.9e-16	53.09	glycine-rich RNA-binding protein 6	[more]
AT3G46020.1	3.3e-16	40.95	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 38..111 e-value: 2.9E-25 score: 100.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 39..105 e-value: 1.9E-19 score: 69.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 37..115 score: 18.256838
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 22..139 e-value: 5.7E-27 score: 96.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..128
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 1..146
None	No IPR available	PANTHER	PTHR15241:SF282	GLYCINE-RICH RNA-BINDING PROTEIN 6, MITOCHONDRIAL	coord: 1..146
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 36..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G009680.1	CmaCh07G009680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding