CmaCh07G009000 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh07G009000
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionthylakoid lumenal 15.0 kDa protein 2, chloroplastic-like
LocationCma_Chr07: 4250579 .. 4252482 (-)
RNA-Seq ExpressionCmaCh07G009000
SyntenyCmaCh07G009000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTAGAACACCTAGTCTATCCAAAATCTTAGGCACAAACACAGCAACGAGCATCCAGAAAAATTCAATAATGGCGTTTATGCATCTTCATCATCATCTTCTTCCATCGCCGTCTCTCTCATTCTCGAAGGCTTCACCGTCGGTTTCCAGATCATTATCTTGCTTGTATACGCCATCATTTCCGTCCAAAAAATCAACTGATTGCATCAACTGGCTTCTTCGTTTTCCCCAAAAATCTCTGAGTTTCGCGCTTTCTGGAGCTCTCGCGCTCGGAATAGCTATCTCTGGTAATCATTCATTTTTGCAAGTTATCATAGTTAAGATGAATAAAGAATGTTGAGTTCTGTGAGCTGTTTCGGGATTCATTGTTTAGATTATGAAATTAGGTCGGACATTATGATGGAATTGTCTCTACCTTGTTATAGAAAGTTTGGATTTAATCGATGTTAACAGTAATTCAGTGAGCGTGCCTCGTAGGAGTTAGATTTGCGGACGCTATAGTTGGGGTTAACAAACCAGAATTGCTTCCCAAGGAGTTCACCTCTGTCATTGATGTTGCTGGATTTCTATCTGACGGTCAGGTGTGGTTGCTTTGCTTCATCATTTGTTTTCTTTTTGTTGTGTTCTTTGATGTATTTTTTGTGTATTTGATCTTCATCATGTGGCCGTTGCTGTTTCTGATTTTCTATGAACAGGAAATTAGGCTGAAACAAGAAATTGCTGACATTGAGAAGGATACTGGTTATAAGTTGCGAGTTTTGGCTCAAAATTATCCTGTGACACCAGGTTTGTTCTATGTTTTATCGTCTTCATCTTTCAGCAACTTGTATCAGGAATCAAAACACTTTCCTATTGTCTTCAAGATTTCTGCTACTCCCACGCTTTTAAAACGCATTGTTCAATCAGCAGATTATTGAATTGCTCAGTTTTAATGTTGAGAACTTCATCACTAAATGTTATAAGATACATTGACTGAATCTTACTAGAAAATTGTATGTTTAAGCGTAACTTCAATTTATTAATGCTTCATAAACTTTGAATGTTTCTCACACACACACATATGTCAAGCTTCTTGAGCTATGATTTCCAATCTAATCGGCAGAAACAAACAATGTAATGCTTTTCACAGGGCTGGCAATCAAAGATTTCTGGCAAGTGGATGATAGAACAATTGTGTTTGTTGCCGATCCTACATTTGGTATGCACAATGTTAGGACACTTTCCTCCCCATATGTCTTTGATGACAATGACATTCTATTGATATCTTCATTCAGGTAACATATTGAACTTCAATGTCGGAGCATCTGTCGATTTGGACATTCCACGGAGCTTTTGGAGCCGTTTGGCTGGAAAGTATGGAAACATATTTTATTGGAAAGAGAAGGTAACGTCTCCAATAGATACTGTTGAACACAACTCTTTATTAACACTAATAAAAAAGAGATCGAAACTATTGCACTCTGTGCTTTAGATTTCTTGGGATGAAAACCTTGGTAGGTTGGAGGGATATTTATAGTAGATGCTAAACAATTTATTCTTAAAATATCCGACAGTAGTGAGCTTTTTCTATGTTCACTAAAATATGGTCATAATCAGAATCTCATATTATCAATCTGGTGACTTAAACAGGGTGAAGATGCGTCTATTGAATCAGCTGTCATTGCAATATCTAATTGCTTGAAAGAACCAGTTGGGCCAAATAACTGTTCTGAGATAAAATAACAGCATCAAACAATTTTGTAAGTATTTTAAACTATATTTGGATGTTCTGCCAATGTTGCATTATATATAGCCTTGTCTTGCTGCAATTTGCATGTCTTAAATGAAATCCTGTTCTTTTCCCTTTTCAAGAATGTGGTGTAAGTCTATTACTTGCGAAAAGAGCACTGGCAATAGTGATAAAAG

mRNA sequence

TCTAGAACACCTAGTCTATCCAAAATCTTAGGCACAAACACAGCAACGAGCATCCAGAAAAATTCAATAATGGCGTTTATGCATCTTCATCATCATCTTCTTCCATCGCCGTCTCTCTCATTCTCGAAGGCTTCACCGTCGGTTTCCAGATCATTATCTTGCTTGTATACGCCATCATTTCCGTCCAAAAAATCAACTGATTGCATCAACTGGCTTCTTCGTTTTCCCCAAAAATCTCTGAGTTTCGCGCTTTCTGGAGCTCTCGCGCTCGGAATAGCTATCTCTGGAGTTAGATTTGCGGACGCTATAGTTGGGGTTAACAAACCAGAATTGCTTCCCAAGGAGTTCACCTCTGTCATTGATGTTGCTGGATTTCTATCTGACGGTCAGGAAATTAGGCTGAAACAAGAAATTGCTGACATTGAGAAGGATACTGGTTATAAGTTGCGAGTTTTGGCTCAAAATTATCCTGTGACACCAGGGCTGGCAATCAAAGATTTCTGGCAAGTGGATGATAGAACAATTGTGTTTGTTGCCGATCCTACATTTGGTAACATATTGAACTTCAATGTCGGAGCATCTGTCGATTTGGACATTCCACGGAGCTTTTGGAGCCGTTTGGCTGGAAAGTATGGAAACATATTTTATTGGAAAGAGAAGGGTGAAGATGCGTCTATTGAATCAGCTGTCATTGCAATATCTAATTGCTTGAAAGAACCAGTTGGGCCAAATAACTGTTCTGAGATAAAATAACAGCATCAAACAATTTTGTAAGTATTTTAAACTATATTTGGATGTTCTGCCAATGTTGCATTATATATAGCCTTGTCTTGCTGCAATTTGCATGTCTTAAATGAAATCCTGTTCTTTTCCCTTTTCAAGAATGTGGTGTAAGTCTATTACTTGCGAAAAGAGCACTGGCAATAGTGATAAAAG

Coding sequence (CDS)

ATGGCGTTTATGCATCTTCATCATCATCTTCTTCCATCGCCGTCTCTCTCATTCTCGAAGGCTTCACCGTCGGTTTCCAGATCATTATCTTGCTTGTATACGCCATCATTTCCGTCCAAAAAATCAACTGATTGCATCAACTGGCTTCTTCGTTTTCCCCAAAAATCTCTGAGTTTCGCGCTTTCTGGAGCTCTCGCGCTCGGAATAGCTATCTCTGGAGTTAGATTTGCGGACGCTATAGTTGGGGTTAACAAACCAGAATTGCTTCCCAAGGAGTTCACCTCTGTCATTGATGTTGCTGGATTTCTATCTGACGGTCAGGAAATTAGGCTGAAACAAGAAATTGCTGACATTGAGAAGGATACTGGTTATAAGTTGCGAGTTTTGGCTCAAAATTATCCTGTGACACCAGGGCTGGCAATCAAAGATTTCTGGCAAGTGGATGATAGAACAATTGTGTTTGTTGCCGATCCTACATTTGGTAACATATTGAACTTCAATGTCGGAGCATCTGTCGATTTGGACATTCCACGGAGCTTTTGGAGCCGTTTGGCTGGAAAGTATGGAAACATATTTTATTGGAAAGAGAAGGGTGAAGATGCGTCTATTGAATCAGCTGTCATTGCAATATCTAATTGCTTGAAAGAACCAGTTGGGCCAAATAACTGTTCTGAGATAAAATAA

Protein sequence

MAFMHLHHHLLPSPSLSFSKASPSVSRSLSCLYTPSFPSKKSTDCINWLLRFPQKSLSFALSGALALGIAISGVRFADAIVGVNKPELLPKEFTSVIDVAGFLSDGQEIRLKQEIADIEKDTGYKLRVLAQNYPVTPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIESAVIAISNCLKEPVGPNNCSEIK
Homology
[Close]
BLAST of CmaCh07G009000 vs. ExPASy Swiss-Prot
Match: Q9LVV5 (Thylakoid lumenal 15.0 kDa protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g52970 PE=1 SV=2)

HSP 1 Score: 317.4 bits (812), Expect = 1.3e-85
Identity = 154/188 (81.91%), Postives = 171/188 (90.96%), Query Frame = 0 

Query: 40  KKSTDCINWLLRFPQKSLSFALSGALALGIAISGVRFADAIVGVNKPELLPKEFTSVIDV 99
           K S D  NW+ RF  KSLS   SGALALG+++SGV FADA VGVNKPELLPKEFTSVIDV
Sbjct: 36  KTSGDEENWVSRFRSKSLSLVFSGALALGLSLSGVGFADAKVGVNKPELLPKEFTSVIDV 95

Query: 100 AGFLSDGQEIRLKQEIADIEKDTGYKLRVLAQNYPVTPGLAIKDFWQVDDRTIVFVADPT 159
           A FLS+GQE R+ QEIA++EKDTG+KLRVLAQNYPVTPGLAIKDFWQVDD TIVFVADPT
Sbjct: 96  ADFLSNGQEKRIAQEIANLEKDTGFKLRVLAQNYPVTPGLAIKDFWQVDDSTIVFVADPT 155

Query: 160 FGNILNFNVGASVDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIESAVIAISNCLKEPVG 219
           FGNILNFNVGA+VDLDIPRSFWSRLAGKYGN+FYWKEKGEDASIE+AV+AIS+CL+EPVG
Sbjct: 156 FGNILNFNVGATVDLDIPRSFWSRLAGKYGNMFYWKEKGEDASIEAAVMAISSCLREPVG 215

Query: 220 PNNCSEIK 228
            NNC+EI+
Sbjct: 216 RNNCAEIQ 223

[Close]
BLAST of CmaCh07G009000 vs. TAIR 10
Match: AT5G52970.1 (thylakoid lumen 15.0 kDa protein )

HSP 1 Score: 317.4 bits (812), Expect = 9.4e-87
Identity = 154/188 (81.91%), Postives = 171/188 (90.96%), Query Frame = 0 

Query: 40  KKSTDCINWLLRFPQKSLSFALSGALALGIAISGVRFADAIVGVNKPELLPKEFTSVIDV 99
           K S D  NW+ RF  KSLS   SGALALG+++SGV FADA VGVNKPELLPKEFTSVIDV
Sbjct: 36  KTSGDEENWVSRFRSKSLSLVFSGALALGLSLSGVGFADAKVGVNKPELLPKEFTSVIDV 95

Query: 100 AGFLSDGQEIRLKQEIADIEKDTGYKLRVLAQNYPVTPGLAIKDFWQVDDRTIVFVADPT 159
           A FLS+GQE R+ QEIA++EKDTG+KLRVLAQNYPVTPGLAIKDFWQVDD TIVFVADPT
Sbjct: 96  ADFLSNGQEKRIAQEIANLEKDTGFKLRVLAQNYPVTPGLAIKDFWQVDDSTIVFVADPT 155

Query: 160 FGNILNFNVGASVDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIESAVIAISNCLKEPVG 219
           FGNILNFNVGA+VDLDIPRSFWSRLAGKYGN+FYWKEKGEDASIE+AV+AIS+CL+EPVG
Sbjct: 156 FGNILNFNVGATVDLDIPRSFWSRLAGKYGNMFYWKEKGEDASIEAAVMAISSCLREPVG 215

Query: 220 PNNCSEIK 228
            NNC+EI+
Sbjct: 216 RNNCAEIQ 223

The following BLAST results are available for this feature:
BLAST of CmaCh07G009000 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LVV51.3e-8581.91Thylakoid lumenal 15.0 kDa protein 2, chloroplastic OS=Arabidopsis thaliana OX=3... [more]
BLAST of CmaCh07G009000 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G52970.19.4e-8781.91thylakoid lumen 15.0 kDa protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35514FAMILY NOT NAMEDcoord: 32..227

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G009000.1CmaCh07G009000.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane