CmaCh07G008980 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh07G008980
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	zinc finger protein 593
Location	Cma_Chr07: 4240917 .. 4242642 (-)
RNA-Seq Expression	CmaCh07G008980
Synteny	CmaCh07G008980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCTCAACAAGCCCTCTTTCTCTCTCGCTAGGGCTCTGGCGGAAGAACCGCCGAATAAAACCCTAAATCTTACTCAGATTCTTCCGTAGTTAGGCTCTCCGGACTCCAATCCAAGAAGATGGGAGGAAAGTGCCCTCACAGAAGCGTCAAGAAGCGGAGATACTCGCACAAGTCCGCTAGGCGTACGAAATTTCTCATCAATGATATCCTTTTACTCTCTAGTTTAATGGGATTTCCCCTTTCAATTCTTCTTATGTTTCCTGTATTATTTACGTTTTTTTTTTTTTTGGTATTTTACTTAACTCAATGAATTGGTGAATCACGCGACGATATGGTTTACGATGCGTTGAAGAAACCTGAGGTGGAGAGGCCTTCTCTACCTGTTGATGAAGACTTGCCTGGAATGGGGCAGTACTACTGCTTGCACTGCGAGTAAGTTCTTTCCTCCGTTAATGTTTTTTTATTACTTGACTTCAAATTCCTGTAGAAAATTGCTTCTCATGCAAGTTGAATCAGTCGAATTTAATATCAAGGAATAAATTTCATTTAATTCCATTCTGACTTTAAATGAATCATTAGTGTTCATGATTAGGTTTAGATGGAGCTGGAGGGCTGAAATATTTAGTGAAGTATTGTTAGCTTCATCTTGAATGAAATTCAGAAATAAATTTTGAGGTTTACTACTTATAAGGGATTAGTGGAATGGGAAAAACAGTGTAGTGGGTTGGGGCTTACGAATTTTGATTTAATTACTGATGGCGGTTGGAGTTCTATAATATTTGTATTCATGATTGGTGGTTTCAGCCGGTACTTTGCGAATGTATCTGTGAGGGATGAACATTTCAAGACCAAGCGCCACAGGAAGCGGTAAGCTATGCCAATTTTCACTTGCTCTTGCTTCATTTTGTTACGTTGTTAATTCGCTTTTATTTTTTGCTTAGTGAATCTGTAGACAATTTCACGTAATGAATTGTTCTCTCTCTATTGGTGTGTAGGTAAAATTATAACTTAATTTTTAAAAATGGAATGAACTACCTTACGCCTTGCTTGATAACCATTTGGATTTTGGTTTATGAAAACTAAGGTTGTTTTCAAAATTTGACTTGGATTTGGAAAATATATGTGGAAAGTAGATAACGAAACAATGATACCCATCAATAGAAGTAGCGTTTACAAATTCAATTTTCGAAAACAAAAAAGTGATCAACGGGGCCTTAATTTCTTAAGTTTCCTCTCTCGATCCTTTCTTAATATGTTATAGATATGGCACATGTGTTTGTGACTCTGATTACATTCATTTGATTGTAAGATATGAAGTTGGTATGATTGTATTAGAGAAGAGCATTTGATTTGCAATTGTTAACAATGTTACTATCCACAACGACAATGGTGCAGGGTAAAACTTATGATGGGTCCTGCACCCCACACGCAACTGGACGCCGATTTAGCTGCTGGGATGGGCATGCCTGATAATGGTCCAAAGCTTATGGCAATGTGAGCTTATCACACAACTTAAATCATTTTTGGTGTTGTAGAGAGCTTAGAATGAGGTTTGTTTCTTGTTTAACCAAAAGGATCAATTTTATCATACATTTTATGCCCATGTATTGTATTTGCAGAGTTCGTTTTATGAATCAATTTTAGCTTCTTATTTCACACCAGCTTCCTAGTTTTGTGTTATGTTACATTCTTACCTAATATAACCCCATGGCTCTTCTTAGTGAT

mRNA sequence

CCTCTCAACAAGCCCTCTTTCTCTCTCGCTAGGGCTCTGGCGGAAGAACCGCCGAATAAAACCCTAAATCTTACTCAGATTCTTCCGTAGTTAGGCTCTCCGGACTCCAATCCAAGAAGATGGGAGGAAAGTGCCCTCACAGAAGCGTCAAGAAGCGGAGATACTCGCACAAGTCCGCTAGGCGTACGAAATTTCTCATCAATGGCGACGATATGGTTTACGATGCGTTGAAGAAACCTGAGGTGGAGAGGCCTTCTCTACCTGTTGATGAAGACTTGCCTGGAATGGGGCAGTACTACTGCTTGCACTGCGACCGGTACTTTGCGAATGTATCTGTGAGGGATGAACATTTCAAGACCAAGCGCCACAGGAAGCGGGTAAAACTTATGATGGGTCCTGCACCCCACACGCAACTGGACGCCGATTTAGCTGCTGGGATGGGCATGCCTGATAATGGTCCAAAGCTTATGGCAATGTGAGCTTATCACACAACTTAAATCATTTTTGGTGTTGTAGAGAGCTTAGAATGAGGTTTGTTTCTTGTTTAACCAAAAGGATCAATTTTATCATACATTTTATGCCCATGTATTGTATTTGCAGAGTTCGTTTTATGAATCAATTTTAGCTTCTTATTTCACACCAGCTTCCTAGTTTTGTGTTATGTTACATTCTTACCTAATATAACCCCATGGCTCTTCTTAGTGAT

Coding sequence (CDS)

ATGGGAGGAAAGTGCCCTCACAGAAGCGTCAAGAAGCGGAGATACTCGCACAAGTCCGCTAGGCGTACGAAATTTCTCATCAATGGCGACGATATGGTTTACGATGCGTTGAAGAAACCTGAGGTGGAGAGGCCTTCTCTACCTGTTGATGAAGACTTGCCTGGAATGGGGCAGTACTACTGCTTGCACTGCGACCGGTACTTTGCGAATGTATCTGTGAGGGATGAACATTTCAAGACCAAGCGCCACAGGAAGCGGGTAAAACTTATGATGGGTCCTGCACCCCACACGCAACTGGACGCCGATTTAGCTGCTGGGATGGGCATGCCTGATAATGGTCCAAAGCTTATGGCAATGTGA

Protein sequence

MGGKCPHRSVKKRRYSHKSARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMAM

Homology

[Close]

BLAST of CmaCh07G008980 vs. ExPASy Swiss-Prot
Match: B0BLT0 (Zinc finger protein 593 OS=Xenopus tropicalis OX=8364 GN=znf593 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.5e-13
Identity = 47/106 (44.34%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 7   HRSVKKRRYSH--KSARRTKFLINGDDMVYDALKKPEVERPSL--PVDEDLPGMGQYYCL 66
           H+S KK+  S   K+ RR K L   D + +D   KPE  +  L   +D  LPG  Q+YCL
Sbjct: 10  HKSDKKKNISKLWKTKRRVKDL---DQIHHD--MKPENAKLLLNQEIDYQLPGNAQHYCL 69

Query: 67  HCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMG 109
           HC RYF ++    EHFKTK H++R+K  +   P+TQ +A+ AAGMG
Sbjct: 70  HCSRYFVDLKTLKEHFKTKVHKRRLK-QLREEPYTQEEAERAAGMG 109

[Close]

BLAST of CmaCh07G008980 vs. ExPASy Swiss-Prot
Match: Q08004 (Bud site selection protein 20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=BUD20 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.3e-11
Identity = 40/101 (39.60%), Postives = 58/101 (57.43%), Query Frame = 0


Query: 14  RYS---HKSARRTKFLINGDDMVYDALKKPEVERPSL--PVDEDLPGMGQYYCLHCDRYF 73
           RYS   +K+ RRT+ L    D++Y+ L   E  +  L  P+DE  PG+GQ+YC+HC +Y 
Sbjct: 3   RYSVKRYKTKRRTRDL----DLIYNDLSTKESVQKLLNQPLDETKPGLGQHYCIHCAKYM 62

Query: 74  ANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGM 110
                   H K K H++RVK + G  P+TQ  +D AAG  +
Sbjct: 63  ETAIALKTHLKGKVHKRRVKELRG-VPYTQEVSDAAAGYNL 98

[Close]

BLAST of CmaCh07G008980 vs. ExPASy Swiss-Prot
Match: Q9U239 (Zinc finger protein 593 homolog OS=Caenorhabditis elegans OX=6239 GN=Y56A3A.18 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.2e-10
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 0


Query: 6   PHRSVKKRRYSHKSARRTKFLINGDDMVYDALKKPEVERPSL--PVDEDLPGMGQYYCLH 65
           P    +K   S+K+ +R        D +++ L KPE     L   +D DLPG GQ+YC+ 
Sbjct: 2   PSGGQRKHTISNKTRKRPG---KDLDQIHEDL-KPEKAAKLLQQEIDYDLPGNGQFYCIE 61

Query: 66  CDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMG 109
           C+R+F +   R  H KTK H+ RVK +    P+TQ +A+ A G G
Sbjct: 62  CERHFVDEKTRQLHRKTKLHKNRVKTLK-EVPYTQAEANAAGGSG 101

[Close]

BLAST of CmaCh07G008980 vs. ExPASy Swiss-Prot
Match: Q553S1 (Zinc finger protein 593 homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0275351 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.2e-10
Identity = 38/117 (32.48%), Postives = 58/117 (49.57%), Query Frame = 0


Query: 1   MGGKCPHRSVKKRRYSHKSARRTKFLINGDDMVYDALKKPEVERPS-LPVDEDLPGMGQY 60
           MG    H     ++  +K AR TK      D ++D ++   +++ S   VD DLPGMGQ 
Sbjct: 1   MGRYSGHGGTHTKKKQYKRARSTKNRAKDIDQIFDEIQPETIDKFSKFEVDPDLPGMGQN 60

Query: 61  YCLHCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKL 117
           YC+HC ++F        H K K H+ RVK  +   P++  ++ +       DNG KL
Sbjct: 61  YCIHCSKHFVTNEDLQSHIKGKPHKIRVK-ELKTKPYSLAESQIPV-----DNGVKL 111

[Close]

BLAST of CmaCh07G008980 vs. ExPASy Swiss-Prot
Match: Q9P370 (Zinc finger protein bud20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=bud20 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-09
Identity = 36/105 (34.29%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 10  VKKRRYSHKSAR----RTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYYCLHCD 69
           V ++R  H +      RT+      D +++ L + E +   LP+D DLPG+GQ+YC+ C 
Sbjct: 4   VARKRKHHSNGNHALFRTRVYGRDLDQIHNDLTESE-KFDKLPIDPDLPGLGQHYCIECA 63

Query: 70  RYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMP 111
           RYF +      H K K H++R+K  +   P+TQ +A+ A  +G P
Sbjct: 64  RYFDSSQALLVHKKGKVHKRRLK-NLREEPYTQEEAEAAVNIGQP 106

[Close]

BLAST of CmaCh07G008980 vs. TAIR 10
Match: AT2G36930.1 (zinc finger (C2H2 type) family protein )

HSP 1 Score: 191.8 bits (486), Expect = 3.1e-49
Identity = 86/116 (74.14%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 3   GKCPHRSVKKRRYSHKSARRTKFLINGDDMVYDALKKPEVERPSLPVDEDLPGMGQYYCL 62
           G+CP R VKKRR SHK+ARR KF + GDD+VY  L+KPE E   L +DEDLPGMGQ+YCL
Sbjct: 2   GRCPTRKVKKRRLSHKTARRDKFEVKGDDLVYTELRKPETEIKPLQLDEDLPGMGQFYCL 61

Query: 63  HCDRYFANVSVRDEHFKTKRHRKRVKLMMGPAPHTQLDADLAAGMGMPDNGPKLMA 119
           HCDRYF+NVSVRD+HFKTK+H+KRV +MMG APH+QLDADLA GMGMPDNGPKLM+
Sbjct: 62  HCDRYFSNVSVRDDHFKTKKHKKRVNMMMGQAPHSQLDADLAGGMGMPDNGPKLMS 117

The following BLAST results are available for this feature:

BLAST of CmaCh07G008980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B0BLT0	3.5e-13	44.34	Zinc finger protein 593 OS=Xenopus tropicalis OX=8364 GN=znf593 PE=2 SV=1	[more]
Q08004	7.3e-11	39.60	Bud site selection protein 20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / ...	[more]
Q9U239	6.2e-10	37.14	Zinc finger protein 593 homolog OS=Caenorhabditis elegans OX=6239 GN=Y56A3A.18 P...	[more]
Q553S1	6.2e-10	32.48	Zinc finger protein 593 homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G027...	[more]
Q9P370	1.4e-09	34.29	Zinc finger protein bud20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)...	[more]

BLAST of CmaCh07G008980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36930.1	3.1e-49	74.14	zinc finger (C2H2 type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003604	Matrin/U1-C-like, C2H2-type zinc finger	SMART	SM00451	ZnF_U1_5	coord: 56..90 e-value: 5.4E-10 score: 49.2
IPR022755	Zinc finger, double-stranded RNA binding	PFAM	PF12171	zf-C2H2_jaz	coord: 58..84 e-value: 2.7E-9 score: 37.0
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 45..109 e-value: 9.6E-23 score: 82.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR47444	EXPRESSED PROTEIN	coord: 1..119
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 61..83
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 47..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G008980.1	CmaCh07G008980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding