CmaCh07G003420 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh07G003420
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr07: 1474675 .. 1475242 (+)
RNA-Seq Expression	CmaCh07G003420
Synteny	CmaCh07G003420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCTGGTACATAGATACCGGGCCAAGACTGTCGGCAGCACCGGCCCAGCCGACGCCCCGGAGACCACAAATTTAAAGAAGACACGGAAAAACGTCGGAATGAACACGAACGAACGGTCAATGGAATGAAGGGATTCAGATTCGGGGAGGAAAAGTTGAAGAAAGTTATATAAACCAATCTTGAAAGATTTAACTATTTTAAACTCGGAGTTCCAATTAAAGGAAGTAGCAGCTGGTCTTCGTCCCTTTCTTCCTTTGAAGGCGAAAGTCAGATTATCGACCATTGAAATTGATCAGCTTCCCGAAGAAATCTGAGAATGAACAACAAAGTCATCTACACCAGCTAAGACGGTTCGTTTTCTCTCTCCCCTCGTCAATGGAATTTAGAGCGTACAATGTTTTCTTTTTTCTTCGGCTATTCATTGATTTTGCGTTTTCCATTTCCGTTTTTCCCTCTTGGATTCAAATACTCCAAAGTAGCAAGAACTGGGAAGGGTGAATCCTTGATTGCGTTTTTTTTGGATTTGATTCTGAATATAAACGTTCGGTTGTGGCCTGCAGGTAA

mRNA sequence

ATGGGCCTGGTACATAGATACCGGGCCAAGACTGTCGGCAGCACCGGCCCAGCCGACGCCCCGGAGACCACAAATTTAAAGAAGACACGGAAAAACGTCGGAATGAACACGAACGAACGGCGAAAGTCAGATTATCGACCATTGAAATTGATCAGCTTCCCGAAGAAATCTGAGAATGAACAACAAAGTCATCTACACCAGCTAAGACGGTAA

Coding sequence (CDS)

ATGGGCCTGGTACATAGATACCGGGCCAAGACTGTCGGCAGCACCGGCCCAGCCGACGCCCCGGAGACCACAAATTTAAAGAAGACACGGAAAAACGTCGGAATGAACACGAACGAACGGCGAAAGTCAGATTATCGACCATTGAAATTGATCAGCTTCCCGAAGAAATCTGAGAATGAACAACAAAGTCATCTACACCAGCTAAGACGGTAA

Protein sequence

MGLVHRYRAKTVGSTGPADAPETTNLKKTRKNVGMNTNERRKSDYRPLKLISFPKKSENEQQSHLHQLRR

Homology

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BLAST of CmaCh07G003420 vs. NCBI nr
Match: KAG7026659.1 (hypothetical protein SDJN02_10662, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.7 bits (304), Expect = 2.5e-24
Identity = 65/74 (87.84%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1  MGLVHRYRAKTVGSTGPADAPET----TNLKKTRKNVGMNTNERRKSDYRPLKLISFPKK 60
          MGL  RYRAKTVGSTGPADAPET    TNLK TRKNVGMN NERRKSDYRPLKLI FPKK
Sbjct: 1  MGLGQRYRAKTVGSTGPADAPETSCSCTNLKMTRKNVGMNMNERRKSDYRPLKLIRFPKK 60

Query: 61 SENEQQSHLHQLRR 71
          SENEQQSHLHQLRR
Sbjct: 61 SENEQQSHLHQLRR 74

The following BLAST results are available for this feature:

BLAST of CmaCh07G003420 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh07G003420 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh07G003420 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026659.1	2.5e-24	87.84	hypothetical protein SDJN02_10662, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmaCh07G003420 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G003420.1	CmaCh07G003420.1	mRNA