CmaCh07G003420 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh07G003420
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr07: 1474675 .. 1475242 (+)
RNA-Seq ExpressionCmaCh07G003420
SyntenyCmaCh07G003420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCTGGTACATAGATACCGGGCCAAGACTGTCGGCAGCACCGGCCCAGCCGACGCCCCGGAGACCACAAATTTAAAGAAGACACGGAAAAACGTCGGAATGAACACGAACGAACGGTCAATGGAATGAAGGGATTCAGATTCGGGGAGGAAAAGTTGAAGAAAGTTATATAAACCAATCTTGAAAGATTTAACTATTTTAAACTCGGAGTTCCAATTAAAGGAAGTAGCAGCTGGTCTTCGTCCCTTTCTTCCTTTGAAGGCGAAAGTCAGATTATCGACCATTGAAATTGATCAGCTTCCCGAAGAAATCTGAGAATGAACAACAAAGTCATCTACACCAGCTAAGACGGTTCGTTTTCTCTCTCCCCTCGTCAATGGAATTTAGAGCGTACAATGTTTTCTTTTTTCTTCGGCTATTCATTGATTTTGCGTTTTCCATTTCCGTTTTTCCCTCTTGGATTCAAATACTCCAAAGTAGCAAGAACTGGGAAGGGTGAATCCTTGATTGCGTTTTTTTTGGATTTGATTCTGAATATAAACGTTCGGTTGTGGCCTGCAGGTAA

mRNA sequence

ATGGGCCTGGTACATAGATACCGGGCCAAGACTGTCGGCAGCACCGGCCCAGCCGACGCCCCGGAGACCACAAATTTAAAGAAGACACGGAAAAACGTCGGAATGAACACGAACGAACGGCGAAAGTCAGATTATCGACCATTGAAATTGATCAGCTTCCCGAAGAAATCTGAGAATGAACAACAAAGTCATCTACACCAGCTAAGACGGTAA

Coding sequence (CDS)

ATGGGCCTGGTACATAGATACCGGGCCAAGACTGTCGGCAGCACCGGCCCAGCCGACGCCCCGGAGACCACAAATTTAAAGAAGACACGGAAAAACGTCGGAATGAACACGAACGAACGGCGAAAGTCAGATTATCGACCATTGAAATTGATCAGCTTCCCGAAGAAATCTGAGAATGAACAACAAAGTCATCTACACCAGCTAAGACGGTAA

Protein sequence

MGLVHRYRAKTVGSTGPADAPETTNLKKTRKNVGMNTNERRKSDYRPLKLISFPKKSENEQQSHLHQLRR
Homology
[Close]
BLAST of CmaCh07G003420 vs. NCBI nr
Match: KAG7026659.1 (hypothetical protein SDJN02_10662, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.7 bits (304), Expect = 2.5e-24
Identity = 65/74 (87.84%), Postives = 65/74 (87.84%), Query Frame = 0 

Query: 1  MGLVHRYRAKTVGSTGPADAPET----TNLKKTRKNVGMNTNERRKSDYRPLKLISFPKK 60
          MGL  RYRAKTVGSTGPADAPET    TNLK TRKNVGMN NERRKSDYRPLKLI FPKK
Sbjct: 1  MGLGQRYRAKTVGSTGPADAPETSCSCTNLKMTRKNVGMNMNERRKSDYRPLKLIRFPKK 60

Query: 61 SENEQQSHLHQLRR 71
          SENEQQSHLHQLRR
Sbjct: 61 SENEQQSHLHQLRR 74

The following BLAST results are available for this feature:
BLAST of CmaCh07G003420 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh07G003420 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh07G003420 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7026659.12.5e-2487.84hypothetical protein SDJN02_10662, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh07G003420 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G003420.1CmaCh07G003420.1mRNA