CmaCh07G000220 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh07G000220
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr07: 145714 .. 146127 (+)
RNA-Seq ExpressionCmaCh07G000220
SyntenyCmaCh07G000220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACAAATTGGAAAGAAAAGGAGAGCGGAGGAATTGCAGGGAAGCGAATCGAAGAACGGAGGCGGAGATACAAAGAGGCTATGAGTCTTCTTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATATTCTCAGTGTTTCTCTGTGTTGTTGGGGAAAGAGAAGGGCTGAACCGAGGAAAAAGGAAAGTGCGCAACCTGAAGGCTGAAGCGAAGTGCGTAAAGGCTCTATGGATGGCACGTGGCGAGAATCCAGTGGTTTGGGTTCCTTGGAGGCTTCAACAGCAACAACCCAAAACCCAACGCCAACATATGCACAAAACAACCCACAATCACAATGTCAATCTCTCTCTCTCTTCTGCCATGTCAGAGTGTAACCCCGTCCTATGA

mRNA sequence

ATGTACAAATTGGAAAGAAAAGGAGAGCGGAGGAATTGCAGGGAAGCGAATCGAAGAACGGAGGCGGAGATACAAAGAGGCTATGAGTCTTCTTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATATTCTCAGTGTTTCTCTGTGTTGTTGGGGAAAGAGAAGGGCTGAACCGAGGAAAAAGGAAAGTGCGCAACCTGAAGGCTGAAGCGAAGTGCGTAAAGGCTCTATGGATGGCACGTGGCGAGAATCCAGTGGTTTGGGTTCCTTGGAGGCTTCAACAGCAACAACCCAAAACCCAACGCCAACATATGCACAAAACAACCCACAATCACAATGTCAATCTCTCTCTCTCTTCTGCCATGTCAGAGTGTAACCCCGTCCTATGA

Coding sequence (CDS)

ATGTACAAATTGGAAAGAAAAGGAGAGCGGAGGAATTGCAGGGAAGCGAATCGAAGAACGGAGGCGGAGATACAAAGAGGCTATGAGTCTTCTTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATATTCTCAGTGTTTCTCTGTGTTGTTGGGGAAAGAGAAGGGCTGAACCGAGGAAAAAGGAAAGTGCGCAACCTGAAGGCTGAAGCGAAGTGCGTAAAGGCTCTATGGATGGCACGTGGCGAGAATCCAGTGGTTTGGGTTCCTTGGAGGCTTCAACAGCAACAACCCAAAACCCAACGCCAACATATGCACAAAACAACCCACAATCACAATGTCAATCTCTCTCTCTCTTCTGCCATGTCAGAGTGTAACCCCGTCCTATGA

Protein sequence

MYKLERKGERRNCREANRRTEAEIQRGYESSSSSSSSSSSSSSSSSSSSSIFSVFLCVVGEREGLNRGKRKVRNLKAEAKCVKALWMARGENPVVWVPWRLQQQQPKTQRQHMHKTTHNHNVNLSLSSAMSECNPVL
Homology
[Close]
BLAST of CmaCh07G000220 vs. NCBI nr
Match: KAG6594389.1 (hypothetical protein SDJN03_10942, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-46
Identity = 105/126 (83.33%), Postives = 108/126 (85.71%), Query Frame = 0 

Query: 1   MYKLERKGERRNCREANRRTEAEIQRGYESSSSSSSSSSSSSSSSSSSSSIFSVFLCVVG 60
           MYKLER  ERRNCREANRR EAEIQRGY+               SSSSSS+FSVFLCVVG
Sbjct: 1   MYKLERIEERRNCREANRRMEAEIQRGYD---------------SSSSSSMFSVFLCVVG 60

Query: 61  EREGLNRGKRKVRNLKAEAKCVKALWMARGENPVVWVPWRLQQQQPKTQRQHMHKTTHNH 120
           EREGLNRGKRKVRNLKAEAKCVKALWMARGENPVVWVPW+LQQQQPKTQRQHMHKTTHNH
Sbjct: 61  EREGLNRGKRKVRNLKAEAKCVKALWMARGENPVVWVPWKLQQQQPKTQRQHMHKTTHNH 111

Query: 121 NVNLSL 127
           NVNLSL
Sbjct: 121 NVNLSL 111

[Close]
BLAST of CmaCh07G000220 vs. NCBI nr
Match: KAG7026393.1 (hypothetical protein SDJN02_10393, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172.9 bits (437), Expect = 1.9e-39
Identity = 93/106 (87.74%), Postives = 95/106 (89.62%), Query Frame = 0 

Query: 21  EAEIQRGYESSSSSSSSSSSSSSSSSSSSSIFSVFLCVVGEREGLNRGKRKVRNLKAEAK 80
           EAEIQRGY+          SSSSSSSSSSSIFSVFLCVVGEREGLNRGKRKVRNLKAEAK
Sbjct: 2   EAEIQRGYD----------SSSSSSSSSSSIFSVFLCVVGEREGLNRGKRKVRNLKAEAK 61

Query: 81  CVKALWMARGENPVVWVPWRLQQQQPKTQRQHMHKTTHNHNVNLSL 127
           CVKALWMARGENPVVWVPW+LQQQQPKTQRQHMHKT HNHNVNLSL
Sbjct: 62  CVKALWMARGENPVVWVPWKLQQQQPKTQRQHMHKTIHNHNVNLSL 97

The following BLAST results are available for this feature:
BLAST of CmaCh07G000220 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh07G000220 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh07G000220 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6594389.11.6e-4683.33hypothetical protein SDJN03_10942, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7026393.11.9e-3987.74hypothetical protein SDJN02_10393, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh07G000220 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..50

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G000220.1CmaCh07G000220.1mRNA