CmaCh07G000220 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh07G000220
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr07: 145714 .. 146127 (+)
RNA-Seq Expression	CmaCh07G000220
Synteny	CmaCh07G000220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACAAATTGGAAAGAAAAGGAGAGCGGAGGAATTGCAGGGAAGCGAATCGAAGAACGGAGGCGGAGATACAAAGAGGCTATGAGTCTTCTTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATATTCTCAGTGTTTCTCTGTGTTGTTGGGGAAAGAGAAGGGCTGAACCGAGGAAAAAGGAAAGTGCGCAACCTGAAGGCTGAAGCGAAGTGCGTAAAGGCTCTATGGATGGCACGTGGCGAGAATCCAGTGGTTTGGGTTCCTTGGAGGCTTCAACAGCAACAACCCAAAACCCAACGCCAACATATGCACAAAACAACCCACAATCACAATGTCAATCTCTCTCTCTCTTCTGCCATGTCAGAGTGTAACCCCGTCCTATGA

mRNA sequence

ATGTACAAATTGGAAAGAAAAGGAGAGCGGAGGAATTGCAGGGAAGCGAATCGAAGAACGGAGGCGGAGATACAAAGAGGCTATGAGTCTTCTTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATATTCTCAGTGTTTCTCTGTGTTGTTGGGGAAAGAGAAGGGCTGAACCGAGGAAAAAGGAAAGTGCGCAACCTGAAGGCTGAAGCGAAGTGCGTAAAGGCTCTATGGATGGCACGTGGCGAGAATCCAGTGGTTTGGGTTCCTTGGAGGCTTCAACAGCAACAACCCAAAACCCAACGCCAACATATGCACAAAACAACCCACAATCACAATGTCAATCTCTCTCTCTCTTCTGCCATGTCAGAGTGTAACCCCGTCCTATGA

Coding sequence (CDS)

ATGTACAAATTGGAAAGAAAAGGAGAGCGGAGGAATTGCAGGGAAGCGAATCGAAGAACGGAGGCGGAGATACAAAGAGGCTATGAGTCTTCTTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATATTCTCAGTGTTTCTCTGTGTTGTTGGGGAAAGAGAAGGGCTGAACCGAGGAAAAAGGAAAGTGCGCAACCTGAAGGCTGAAGCGAAGTGCGTAAAGGCTCTATGGATGGCACGTGGCGAGAATCCAGTGGTTTGGGTTCCTTGGAGGCTTCAACAGCAACAACCCAAAACCCAACGCCAACATATGCACAAAACAACCCACAATCACAATGTCAATCTCTCTCTCTCTTCTGCCATGTCAGAGTGTAACCCCGTCCTATGA

Protein sequence

MYKLERKGERRNCREANRRTEAEIQRGYESSSSSSSSSSSSSSSSSSSSSIFSVFLCVVGEREGLNRGKRKVRNLKAEAKCVKALWMARGENPVVWVPWRLQQQQPKTQRQHMHKTTHNHNVNLSLSSAMSECNPVL

Homology

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BLAST of CmaCh07G000220 vs. NCBI nr
Match: KAG6594389.1 (hypothetical protein SDJN03_10942, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-46
Identity = 105/126 (83.33%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 1   MYKLERKGERRNCREANRRTEAEIQRGYESSSSSSSSSSSSSSSSSSSSSIFSVFLCVVG 60
           MYKLER  ERRNCREANRR EAEIQRGY+               SSSSSS+FSVFLCVVG
Sbjct: 1   MYKLERIEERRNCREANRRMEAEIQRGYD---------------SSSSSSMFSVFLCVVG 60

Query: 61  EREGLNRGKRKVRNLKAEAKCVKALWMARGENPVVWVPWRLQQQQPKTQRQHMHKTTHNH 120
           EREGLNRGKRKVRNLKAEAKCVKALWMARGENPVVWVPW+LQQQQPKTQRQHMHKTTHNH
Sbjct: 61  EREGLNRGKRKVRNLKAEAKCVKALWMARGENPVVWVPWKLQQQQPKTQRQHMHKTTHNH 111

Query: 121 NVNLSL 127
           NVNLSL
Sbjct: 121 NVNLSL 111

[Close]

BLAST of CmaCh07G000220 vs. NCBI nr
Match: KAG7026393.1 (hypothetical protein SDJN02_10393, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172.9 bits (437), Expect = 1.9e-39
Identity = 93/106 (87.74%), Postives = 95/106 (89.62%), Query Frame = 0


Query: 21  EAEIQRGYESSSSSSSSSSSSSSSSSSSSSIFSVFLCVVGEREGLNRGKRKVRNLKAEAK 80
           EAEIQRGY+          SSSSSSSSSSSIFSVFLCVVGEREGLNRGKRKVRNLKAEAK
Sbjct: 2   EAEIQRGYD----------SSSSSSSSSSSIFSVFLCVVGEREGLNRGKRKVRNLKAEAK 61

Query: 81  CVKALWMARGENPVVWVPWRLQQQQPKTQRQHMHKTTHNHNVNLSL 127
           CVKALWMARGENPVVWVPW+LQQQQPKTQRQHMHKT HNHNVNLSL
Sbjct: 62  CVKALWMARGENPVVWVPWKLQQQQPKTQRQHMHKTIHNHNVNLSL 97

The following BLAST results are available for this feature:

BLAST of CmaCh07G000220 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh07G000220 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh07G000220 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594389.1	1.6e-46	83.33	hypothetical protein SDJN03_10942, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7026393.1	1.9e-39	87.74	hypothetical protein SDJN02_10393, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmaCh07G000220 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G000220.1	CmaCh07G000220.1	mRNA