CmaCh06G016280 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G016280
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	ATP-dependent DNA helicase 2 subunit KU70
Location	Cma_Chr06: 10130127 .. 10140857 (+)
RNA-Seq Expression	CmaCh06G016280
Synteny	CmaCh06G016280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAGCGAAACTTGCAAGAGACGCAGCATCTCTCTGTGAGCAAGAAGGAAAAAAACTCGTCAGCACTTCTCTCATTCGTGCTCATCTCTCTCAAACTCGCCATGGATTTGGACCCAGATGAGGTTTTCAGAGACGACGATGACGATCCTGACAATCCACTCTTTCAGGTTCAATACCAAAAAGTGATTCTGCATGCATTCTGTACCTGTATTTCTTCTTCCCACTCCATTTCCTTAGTTCCGTTCGATTTGTCTCTACTCAATTTGGTGAACAGGAGAAGGAGTCAACAAAAGAACTGGTGGTTTACTTGGTGGATGCTTCCCCTAAAATGTTCAGCACGACTTGCGCCTCCGTGAGTTCTTCCACTCTTTTTGCTGTCCCTGCTACTGTCATCTTGTCGTTATTTCAATCCTCGAGCTGAACTAGCTCTTCGGATTTTATTATATATTCTTTAGCTTGAAGTAAACGTTATCTGTTAAGAGTATTCAGGCCAAAAAGGCTGGATACTATGCTCTACAAGTAGAGTTCTTATTGGTAGTGGGAGCTGACGTTTGGAAAAGAGACAGAAATAAGGAATGTTGTTGCTTGGTCGTTCTCACTGCCTCAACTTTTCGTGGGAAGATTTCTCATTACCTCATCCGTGGTTAAATATTCTTCATTTTAGATTTTGATAGTTCTTTTTACTGAGGTCTCAAGAATACTATAATTGAATGAAAACAAAGTTTAGTTTATGATGTTCCTTTAACTGATTATTCTACGTGGCGATACGGACTCAACCCGCTCCTACCCATCCCGGGGTACCATAGCATGTCGGGAATAAGGGGGGACACACTGGACGTAATGACTCCCTTGGTTGGGGGGCTGTGCCGCCCTGCCTTTACGATCGATACACAGTTGAGTAGGCCGATCACGAACGCTACTGGTGTGGGAGCGATCCTGGTCAGGGAAGGCTAAGACGGCGCCTCGCATATGGGTAGCAAGAGGGCGCTTATGCCCCGACGGTGGGGCCTTATGGGGAAGGGCCCAGCCCAATAGGGACAGCACACCCCCCACTTCTAGCGCACCTCTGTATCCACTTTTTCACTCTTTCTAGTCGGTGGAACCGGTGAACCACGCGAGTAGGTTAGATAAGTGGGGCAGAGGGCTTGTAGTACCCCTTTTCTTCAGTATACTTTGTTTTTATGCTTAGAATATGTTGGGTATCTGTTGAGAAATATTAGGAAGAAAAGTGAAGATTGGTGGTAGATAGAGTAAGTCGGGGGGTTTGAGGTATGCAGAAATGGAATAGTAGTTTCTTGGGAGAGTCCATATTCAGACCTCTCAAAACGAGCTTCATTGTTTGAACCCACATTTCTAGCTCTTATTAGTCTCTTTCTCCATGCTTGAAAGAGCTTCATGGTTTCTGATTTATTTATTTTAATTTGATATCAAGCATATGCTGAATACTACATTTTTTTGCTTCCAGGAACATCAAAAGCAGGAAACCCATTTCCAAGTTGTTTTGAGCTGCATTTCACAATCATTGAAGACACAAATCATTAACAGAAGTTATGATGAAGTTTCCATATGCTTTTTCAACACAGTATGTTGTTGGCTTAGTAAGACTTGACTTATTTTTACTTAGGTTTCCTTTATAAATTTAAATGTACTTTATAGCCGGAGTGCTTTCTGATAGATTATAAAAGGTCCTCCCATCTACGATTACTGATTATCAATCAGCCTTCACGGCCAATCAGCAAATCCTTGATGCACCACTTGAGGAAGTATCAAGTTTGATATTAATTGCCTCAAAATAGAATTTTTGGGTATTGGTATTGACTCACATCTAGCATCTCATTTGGCAACATCCTTTGGTAGTAAGATTGGTTATTAGCCGACTACTTTCTCAAGTCTCCCTCTAAATAGCAACACTCGATCTTTCAGCTTTTGGACCCCGGTTCTTGCAAATATGGAGAAACAATTGTATAATTGGGGTATATCACATATTTATATAGCGAGGAGACACACAGTTATACAAGCTACACTTGCTAATCTTCTTACTTACTACTCTCTTTTTCTTGCTCCTATCAAGGCCGCCAAGGCCATTGAGAAGCTATGACCAGCTTCTTATGTTCTTCAATGTAATTCTACTTATTCCAATAGTATTTTCTATTTATGGCATGCACAAGTTGACGCCTAACTTTTTTTCTCTGTTTTAATTCTTTCCAGAGGGAAAAAAAGAATTTGCAGGATCTAAATGGTGTCTTTGTGTTTAATGTCTTTGAACGAGAAGATCTTGATCGACCAACAGCAAGGCTTCTGAAAACCGTTGATAGCTTAGAGGGTAACTACTAGCTACACAAGATACTTATGTTGGGTCATTGGGAGGACTAGTTGATGTAGTTAGTGAGATAGGACATATGAGATTCTTCTGTACTTTTGTCAATCAAGTACATAAAACAAACTATGGGAGTTCTAGCAGCTGAAGGAGTTGGAAGTACTCCTTGTTATTGTTGAAATGAAATTAGTAGCGAAAGGAAAATCTGAACATAAAACTTTAAAATCCAGATAGATGTAAGAAAAGGATATAAATTATACAGAATTATGTTACCGCTACTACCAACGAAAGTATATATGAAAGCTACAACGTGATTCATCTGTACAAGTTCATTGAAAGCTACAACTTGATGCTTTGATATTGCTGATTTTCCAATGGTATAATGAGCATCTAACCTTGAGGTTTAATTTAGAAGAGTTATTCCAGGATAAAAAAAGGAAAGAAAAAAAAAAAAAGAAAAAGAAAAACTAAGAATTTAGCTTTCTTGTTTCTTTGCTGATCCTGGAATGACCAAGTACTGCAAGCATGGCTGTGAGAAGAGGATACTGTTTATGGATTGTCCATGTTTGCTAGACATCTGAGATCGATGCTGCTCTGTTAATATATGTTATCATAGTTTACATTGTTAAAGAAGATTACTGTTTTAGATGGTAGATCATTTTCCCTGGATTTTTAATAAAGGTATATCTGATTCATTATTGATAATATTATTAATATTTTTGCAGAAGTATTTATGAAAGAGATTGGAAGTCAGTATGGCATTGTCTCGGGTTCTCGTGAGAATTCTCTTTACAATGCTATATGGGTAGCGCAAGCCCTGCTGCGGAAAGGGTAGTACATTGCTATCAATTGAAATTTAGTTATTCTATGTATTCTCTGACTGATCTACAGTATAATTGGTGAAATATCAACCCATCCACCCATCACAAACACAAAAGAGAAGCTATCCTGATTAGTGTTTTCACGTACAATTTGTTTCAGATCTGCAAAAACAGTTGATAAGCGGATCCTTTTGTTTACAAACGAAGATGATCCTTTTGGAAGTATCAAAGGTGCTACAAAATTTGATTTGATAAGAACCACACTACAGAGAGCTAAGGTAGGTGCATTTGTTTTTAAATGCTTGATGAGTTGTGCATTTTGGTGGTGGAAGTAGGCCCGCTGAGAGTTATCTGTTCTTTTCCAGGATGCTCAAGATCTCGGCATTTCAATTGAACTCATCCCGCTGAGTTGCCCTAATGAGCAATTTAATATCTCTCTTTTCTATGCTGTACGTGTATCTTTACAGTTGATGTTATCAGTATGTAAATGATATCATGTTCATTTTACGAACTGGATGAATATTTTGCATTCTAGGACTTGATTGGATTAGAAGGAGGTGAGCTTGCTCAGTTTGTTCATTCAGCAGGAGATAGGTATGGTAAATAGTATTTTTGTCAACAGTAATGATATCGGGTTGAGTACCTTTTGTCAAAGCAAATGCTCTTTATTTTTAAAATACAGCAAATAGAAAATGGGAGATTATCCAAAAAAAAAGTATGCAATATTATCGTTTCCTATTATCTTTCAGTTTTACAAATTTGGATGAATATTTTCAACGGATGAGAATACCTGTAGGGGGCCTCACAATATCACGAGAAGATGAGATGCCTCTAGAACTTTGGATAGATTTGATAATCCTAAGATTAATTGACTTGAGTTTAGTTTCCGCATGAATGAAAATCTAGCCGTTTAACTTGTGCGAAGTATCCTTAACTAAGCTTGGGTATCCAGACCTCTTAACATTTGAGAATAATCAACGAGGACTAGAAAACCCTTCAATAAAACCTCCTTTTGATCTTGCTTCTGACCTCTCAAAATTGATCAAGCCAAAGAGCTTCCGTACTTTTCTGTCCCCCCAGGACATTTCAAGTTTGCTTTGCTTTCCTGTGTATCTTAGGGAGAATAAGAATGAGGGTGAAGTTCGTCATGTTAAAAATCCAGAAAAGATGTTTTATATTATGTGCAATGCACGTGTTAGCTTGCTACTATATTCAATATATAGTGTCCAAATGTACACTCTACCTTTTCTTGTTCTGCTATTTGGTCCCTAAATGATTTATTTTTATCCCGAATTTTCCAATCCTCGGGAATGTTGGTTTGTGTATGTACTTTTTGGTGCACATGGAGCAAATTGTGTTTCATGTTCTCTGTGCTGTGAGATTAATATGTGTGTCTCATATGTTATACTTTCTTTCATCTCTTGTAGAATTCATACTTTAGTCTCACTTGTCTCCTACATATTTTATTATCAACCATAATTTTCAGATTAGAAGATATGAAGGATCAACTGAAGAAACGAATGTTCAAGAAGCGTGTAGTCAGAAGTCTCAAATTCTCTATCACCAATGAATTGTCAATTGATGTTAATAGTTATGCATTGATTCGTCCCACCCTTCCTGGTACTAAAATCCTGATGTCCTATAGTTGGAACATTGCTTATGCATGTTTGTGGTTCTAATATTCAATATTACCTTCCTTGTCTTGACTGTAGGAGCAATCACTTGGCTCGATTCTATCACAAATCGTCCGTTGAAGGTAAAAATATCTTATTTAGGTTTCACTGTTCTGGTTTTACTGGTGCAAGTTGATTGTATTACATTGTATTTATCATGCCTTGAGACAGAAGGATCAATCTAAAAGTTTCTCAATGGTTATTGAGAATGAATCAAATCTAATCATTCTTCTCAATCTTTTCTGCCTACTTCAATAGAATTGCTTTCAGTTGTTCTCCTAGTCTAACTTTTATAATGCTGGTGATGTAAGCACTAGTAATGAGTCAAAGCTTGTTTTTTGCTGGAATTATGCAGACAGAGAGATCATTCATTTGTGCGGATACAGGTGCATTATTTTCAGAACCCTCAAAGCGATTTCAGCTTTATAAAAAGTAAGCCTTTTAAACTTTAACCTTTCTTAATATAAAACATAAGTTTTCTTCTGGAAATTAATATTTTTCGTTGCAAAGTATCGTTTTCCTTTGATTTTACTGAAATAAGAAAGATAAAGGAGGTTACATAGAGTAAATAAGGGATCTTTTCTCGCTACTTGGTATGTATTTTTTGTTTGCATTTGCAAAAGTAAGTGCATTTTTTTTCTTCGTATATTTGTGAAAATATACTAGTATGTTTTCCTCTGTAGTAAAAACTATGTCTAGTGGAAAGAGACAGAAGCGAGGAAGTAAGGACTAAGCCCAACAATTCCAATGAGTCAACCGTAAGCCAAAACCAAACCACGTGAACAGAATGATCCAAGAAGCAAAAGCATCCCAGATTAAAAATTTATATAATAATTCACTAGAGGACTCAACCTATATATGTACCACTTTTTTTTTTTTTTTTTACCGATCTTTTTGTTCATGAAATCTTGTATCAACTATTTAAGAGCAACTTGATCAAAACAATTAGAGAAGCTTTTGTAGAAATTGCTAATCATCAGCAAATTATTGAAGCAATAACATATATTGAAACTGAAAATGATTTGCTTTTATTGCATGTCTATTAGATCGTACTTTACTTGGTGAATTTCAGTGATTATTTTTCTTAATATCTAGTCAGGTAATTAAGTTCTCTGAGGAGGAGTTATCAGAGATCAAGAGGGTTGCTACTGGGCATCTTCGTCTTCTAGGTTTCAAGCCATTGAGTTGCTTAAAAGATTATCACAATTTACGGCCATCAACATTTTTATATCCTAGTGATCAGGTTACCTAGCATCTTTTCTCTCTTTTATGTGTTGTGTATATTTGTATTCTTAGTGTTTTTCAAAATTGTGTATTGTTAGTTGCTGCCTCCTTAACATGCTTTCACCTTTTAGGCTGTTTTGATGGCTACTCACATTTTTGTTTCTCTCTATGATGAATACCGCTGGCCTCTTTCCTTCCTTCTGACAACCACTCACATGATAAATAATCTGATGGATATTGTCTAACTACATATGATGGTTCTCAAGATCCTCAATATTTTGTCATCACTGATTAAAGGAAATCTGTTCAAATGTCTACGTAATAACCCCAATCCAGATTTTGACGGTCTTTATTGTAGGAAATGGTTGGTAGCACTTGCATCTTCGTTGCCCTCCACAGATCCATGTTGAAGCTCAATCGGTTTGTACATATAACCCCATCCTTACCCTGTATAATTAAACACATTGATTCTCTTCATTGGTCCAAAAATTGTATTTCATAGTAGCAACTTTTTTCCTTCCACAGTTATTTTATTTGTATGACTGTCGACGTACCAATGTTTTTTAGTGCACCTGCGACAGTCCTTTGGGGCTCAAGTGCAAAGCTCATAGAAAAGTGGCAACATTTTTTGTTTGAGAAACAATTAATCTTTTAGATATGAAAAAAATATAATATTATGAATAATAAGATGGTGAAAATTCTAAGAAATTTAGTGTGCTGAGAAACAAGAATCTTTAATGAGCATTATACCGTTTCTAAGTAAATTTAGTATCTTATGAAGAAGGTCTCCAACAATGCTGTGGCAAGTTTGGTATGGTTTATTCTGATATCAACTAGCCTCATGTTAGATATCATGACGGAAGGGCCGTGGATATAGAGATTAATGAAGGAAGTAATTTCTCCAAGGGCTCAGATTGAAGAGATTTAGAATCTTCCAGCTCTATATAATCTTGAAGTAAAAAATTGGTCTCTCTTTGGTCCACAACTGAAGTATCCCTTAGATAGTATACAGAATGGATCATGTTTGGTGAAAATTTTTAAGAACTATGACGGGGCAGGTAATCAACTTTCCCCTTGGGATAGGATACTAAAGAAGGAAGTTGATCACAAATTATCAATAGGCGTGCAATCCTATTCGAACTTATAACATTTCATAATATCATTGAAAAGTTTTGTTCCCTTGTCAAAGAAGAAGAAAAAAAAAGCTTGGGATATATTTTTCCCAGTTGATGTCGGGTCTGTTGAAGAGAACAAACCTTTTTAAAACATTGATTCAAGCTATTCGAGGTATGTAGGCGGATTCAGCTTAATATTTTTTTTCTCTCTTGTTTTTACTTTATCCTTTAGGAATAAATTTTAAGTTTGAAATTTCTTGTAAGTGTTCTATGCTAAAACATCTTGACAATTGGGAAGAATTTGATTGTAAGTACATCCATCTGTCGTAATATGTGGTTCCCCGAGAATCCATCTGGAACTGTATCCTTTCTCCATTAAGTGTTGACATATGTAACTGAAATGAACATTGAATCCCCATTTTAGTATTGATTAATGGGTAGATTTTTAAAATTTGTAACTGATGTGGTTCTATACAATAACCATTTTGTTCTCTATTACCCAGTTTTGCAGTTGCTTTTTTTGGTAGTCCATCTCGCCCCCAGCTAGTTGCTCTTGTGGCCCAAGTAAGATGAAACTATCCTACTATCATTAGCAATGTCATGCATCTCTCATTTTATCTTATTCTCCTCATCTCTGCTACCAATTTTCATTTGTGTTATTGATTTAATGGACATCAAATCAGATCACTGAAGTTGAGAACATTTTTGAAGCTTCGGAATGGATTTTTTTTTTTCTTTTGTTGCATTTAGGACTTTCAGTTGTCATTTTACTGCTCAAAGGTTTAGGCGTTGTTGAGCTCTAATTTCTGAGTTTAATGCACTTGTCTTATTGGAACTACAAAGGATGAGATTATTACTGCTGGGGGACAGCTCGAGCCACCAGGAATGCACATGTTATATTTGCCTTATGCTGATGATATCCGACATGTTGAGGAGGCAAGAAAAATGTTTTAGTTGGTCAGAGTAGTTTCTTAAAGTTGCTGCTAATTAGTACTTAATATGTTGCAGCTTCATCCGGATCCTAATGTTGCACCTAAAGCGACTGATGATCAAGTTAAAAAGGCCGCTGCTTTAATGAAACGCATTGACTTGAAAGACTTCTCAGTTTGCCAGTTTGCTAATCCTGGTATTGTTACAGATTCATACCTTCAATTTGCTAGGAACCAGAAAATTGAAATGGAAATGAATAAAAATAGTTTTAATATGAAAAAAAAAAGGTAAATTGCAAGTTTCTCAACCACTTGGCATTTATTATTTCTGAATTTTTATTTGTGGAACTTTTTCCTTCCCTTATTAAACATGGTAGTTTACAGAATTCTAAGTTGGCATGCTGCTTGCTGTAACATAAACTCATATAAAATGCATACGCCCCTAATTAATGCCTCTCTTCCGTGTCCCAACATTTTTGTTACTATCCTCTAGCAGATAATGTCCTCTTTGGGCTCTCCCTTTCTGGCTTCCCCTCAAGGGGCTTTAAAACGCGTCTGCTAGGGAAAGGTTTCCACACCCTTATAAATGGTGGTTTGTTCTCCTCCCCAATCAATGTGGGACATCACAATCCACCCCCTTCGGGGCCCAGCGTCCTCGCTGGCACTCTTTCCTTCCTCCAATCAATGTGGGACCGCCCCCAAATCCACCCCTCTTTGGGGCCCAGCGTCCTTACTGGCACACTGCCTCGTGTCTACCCCCATTTGGGGAACAGCGATAAGGCTGACACATCGTTTGGTATTTGGCTCTGATACCATTTGTAACGACCCAGATCCACCGCTAGCAGATATTGAAGACCCAGGCCCACCGCTAGCAGATATTGTCCTCTTTGGGCTCTCCCTTGAGGGGGAGCTTCCCCTCAAGGGGCTTTAAAACGCGTCTGCTAGAGGAAGGTTTCCACACCCTTATAAATGGTGGTTTGTTCTCCTCCCCAACCAATGTGGGACATCACAACTTTGGTAGGTCTAGAGTTGTGGCAGGGCCTCTTTCTGCTGGACATTGTTTTTGTTCCCCATTGTTTTCTTTAATTTGGTTTCACTAAAAACACGATTTCTACCACAACAGTAAAAAAGAGGAAAAAAAAAGGCCGGATAAAAGGTATCACTTGTGTCCTTACTTTTTATGAGAGCATGTTTATCCTTGATGTATAATGAAAGACATATTTCAGCCTTGCAGAGACATTATGCAGTACTGCAGGCTTTAGCCCTGGAAGAAGATGACATGCCCGAGGTTAACGACGAAACAGTCCCTGATGAAGAAGGAATGGCTAGGTATGATTATGGTGTAGCTTTGTCTCTCTTTTTTAAACCACTGCAGAATAGTACAGCTTATTGCCTTTGCTTATTTTATCTGCTTAGAAGGCATTCTGTTTCTGCATGTTTTGTTGTAGACCTGGGGTTGTGAAGGCATTAGAAGAATTCAAGCTATCGGTTTATGGGGAAAATTACGAGGAAGAAGAAGCTGGTAAAGGAAAAGTGAGTGAAGCTTCAAAGAAGAGAAAAGCATTATCAGAGAGTGCTGCTCAGAAGTGTAAAGAATATGACTGGACCGACCTTGCTGACAATGGAAAGGTGAGACAACTCAATCTCTTTCCCCATCTTTCTTGTCATCTTCTTTTCTAGTATGGAAGGGGCAGGGGTCCACCACTCTGAAACTCATAAAATTATTCAACTGGTCGCCAGTGTAGTTTCTCCTGTTAAAACCCTTGAATCCATAGGTAAACCAAGCCTTATTCCGGTCTGGCCCGGTATGGAATGAACTTATAAGGAGAAAGCGATAGAACAAGATAGTCGTTTATCTGTGCCATGATAATTTCTTCGGATTTGCGCGAAGTAGCGGACCGATCACTCTGTGTGGATGCTCTCCATGGCTGAATGGTTAAAGCACCCAACTCATGATTGGCAAATTCGTGGCGAAGAGCCGACATCGAGTTGCCAAACCCTCCCGCGTGTTTTTGTTGGACACGTGTTAATATAGGAAGCATGGTTCCTAGATATAAGAGGCAGCAGATTCATATAATATACTGATTTTTTGTGCCTCGTTTATCGAATGGTTTGAAATCATCCACCACCGTAATTCAACCTCTTTGAAAGTTTTGCCTCCATATTTGCAGCTGAAGGAATTGTCGGTTGTCGAGTTGAAGTATTATTTGACCGCACACGATCTTCCCGTATCTGGAAAGAAGGAAGCCCTGATATGCAGGATACTATCACATATGGGAAAGTAGGATGCTTGAGACAAAATGCTTCACAGGCTTCTTCTAAGCCTTACGACATGTAGGATGGAGGAATGCTTTGCACTTTGGGATGACATAACAACACGTTCACAGCTGTAAGATTGGTTTCCTTCTTTTTTCATAATTAAGAACACTGTTCAGATAGCTTAAAAAACATGATCCGAGTGAACAGAAATGTTTTTTGAGTGATTATTTTGAAGTAGTTTGAACTTTGTCTCCCAAACAAGCATAGGGATTGGATGCTGTTCTTTGAGGTTCGGGTTTAATGTTTTATAAGTTTTGATTCTCTTCTATGAACTTATACTCAACCGGTTAAGATCTATACTCACATATATATACACAATGGTTCAGTGAGCG

mRNA sequence

AAAGAGCGAAACTTGCAAGAGACGCAGCATCTCTCTGTGAGCAAGAAGGAAAAAAACTCGTCAGCACTTCTCTCATTCGTGCTCATCTCTCTCAAACTCGCCATGGATTTGGACCCAGATGAGGTTTTCAGAGACGACGATGACGATCCTGACAATCCACTCTTTCAGGAGAAGGAGTCAACAAAAGAACTGGTGGTTTACTTGGTGGATGCTTCCCCTAAAATGTTCAGCACGACTTGCGCCTCCGAACATCAAAAGCAGGAAACCCATTTCCAAGTTGTTTTGAGCTGCATTTCACAATCATTGAAGACACAAATCATTAACAGAAGTTATGATGAAGTTTCCATATGCTTTTTCAACACAAGGGAAAAAAAGAATTTGCAGGATCTAAATGGTGTCTTTGTGTTTAATGTCTTTGAACGAGAAGATCTTGATCGACCAACAGCAAGGCTTCTGAAAACCGTTGATAGCTTAGAGGAAGTATTTATGAAAGAGATTGGAAGTCAGTATGGCATTGTCTCGGGTTCTCGTGAGAATTCTCTTTACAATGCTATATGGGTAGCGCAAGCCCTGCTGCGGAAAGGATCTGCAAAAACAGTTGATAAGCGGATCCTTTTGTTTACAAACGAAGATGATCCTTTTGGAAGTATCAAAGGTGCTACAAAATTTGATTTGATAAGAACCACACTACAGAGAGCTAAGGATGCTCAAGATCTCGGCATTTCAATTGAACTCATCCCGCTGAGTTGCCCTAATGAGCAATTTAATATCTCTCTTTTCTATGCTGACTTGATTGGATTAGAAGGAGGTGAGCTTGCTCAGTTTGTTCATTCAGCAGGAGATAGATTAGAAGATATGAAGGATCAACTGAAGAAACGAATGTTCAAGAAGCGTGTAGTCAGAAGTCTCAAATTCTCTATCACCAATGAATTGTCAATTGATGTTAATAGTTATGCATTGATTCGTCCCACCCTTCCTGGAGCAATCACTTGGCTCGATTCTATCACAAATCGTCCGTTGAAGACAGAGAGATCATTCATTTGTGCGGATACAGGTGCATTATTTTCAGAACCCTCAAAGCGATTTCAGCTTTATAAAAATCAGGTAATTAAGTTCTCTGAGGAGGAGTTATCAGAGATCAAGAGGGTTGCTACTGGGCATCTTCGTCTTCTAGGTTTCAAGCCATTGAGTTGCTTAAAAGATTATCACAATTTACGGCCATCAACATTTTTATATCCTAGTGATCAGGAAATGGTTGGTAGCACTTGCATCTTCGTTGCCCTCCACAGATCCATGTTGAAGCTCAATCGTTTTGCAGTTGCTTTTTTTGGTAGTCCATCTCGCCCCCAGCTAGTTGCTCTTGTGGCCCAAGATGAGATTATTACTGCTGGGGGACAGCTCGAGCCACCAGGAATGCACATGTTATATTTGCCTTATGCTGATGATATCCGACATGTTGAGGAGCTTCATCCGGATCCTAATGTTGCACCTAAAGCGACTGATGATCAAGTTAAAAAGGCCGCTGCTTTAATGAAACGCATTGACTTGAAAGACTTCTCAGTTTGCCAGTTTGCTAATCCTGCCTTGCAGAGACATTATGCAGTACTGCAGGCTTTAGCCCTGGAAGAAGATGACATGCCCGAGGTTAACGACGAAACAGTCCCTGATGAAGAAGGAATGGCTAGACCTGGGGTTGTGAAGGCATTAGAAGAATTCAAGCTATCGGTTTATGGGGAAAATTACGAGGAAGAAGAAGCTGGTAAAGGAAAAGTGAGTGAAGCTTCAAAGAAGAGAAAAGCATTATCAGAGAGTGCTGCTCAGAAGTGTAAAGAATATGACTGGACCGACCTTGCTGACAATGGAAAGCTGAAGGAATTGTCGGTTGTCGAGTTGAAGTATTATTTGACCGCACACGATCTTCCCGTATCTGGAAAGAAGGAAGCCCTGATATGCAGGATACTATCACATATGGGAAAGTAGGATGCTTGAGACAAAATGCTTCACAGGCTTCTTCTAAGCCTTACGACATGTAGGATGGAGGAATGCTTTGCACTTTGGGATGACATAACAACACGTTCACAGCTGTAAGATTGGTTTCCTTCTTTTTTCATAATTAAGAACACTGTTCAGATAGCTTAAAAAACATGATCCGAGTGAACAGAAATGTTTTTTGAGTGATTATTTTGAAGTAGTTTGAACTTTGTCTCCCAAACAAGCATAGGGATTGGATGCTGTTCTTTGAGGTTCGGGTTTAATGTTTTATAAGTTTTGATTCTCTTCTATGAACTTATACTCAACCGGTTAAGATCTATACTCACATATATATACACAATGGTTCAGTGAGCG

Coding sequence (CDS)

ATGGATTTGGACCCAGATGAGGTTTTCAGAGACGACGATGACGATCCTGACAATCCACTCTTTCAGGAGAAGGAGTCAACAAAAGAACTGGTGGTTTACTTGGTGGATGCTTCCCCTAAAATGTTCAGCACGACTTGCGCCTCCGAACATCAAAAGCAGGAAACCCATTTCCAAGTTGTTTTGAGCTGCATTTCACAATCATTGAAGACACAAATCATTAACAGAAGTTATGATGAAGTTTCCATATGCTTTTTCAACACAAGGGAAAAAAAGAATTTGCAGGATCTAAATGGTGTCTTTGTGTTTAATGTCTTTGAACGAGAAGATCTTGATCGACCAACAGCAAGGCTTCTGAAAACCGTTGATAGCTTAGAGGAAGTATTTATGAAAGAGATTGGAAGTCAGTATGGCATTGTCTCGGGTTCTCGTGAGAATTCTCTTTACAATGCTATATGGGTAGCGCAAGCCCTGCTGCGGAAAGGATCTGCAAAAACAGTTGATAAGCGGATCCTTTTGTTTACAAACGAAGATGATCCTTTTGGAAGTATCAAAGGTGCTACAAAATTTGATTTGATAAGAACCACACTACAGAGAGCTAAGGATGCTCAAGATCTCGGCATTTCAATTGAACTCATCCCGCTGAGTTGCCCTAATGAGCAATTTAATATCTCTCTTTTCTATGCTGACTTGATTGGATTAGAAGGAGGTGAGCTTGCTCAGTTTGTTCATTCAGCAGGAGATAGATTAGAAGATATGAAGGATCAACTGAAGAAACGAATGTTCAAGAAGCGTGTAGTCAGAAGTCTCAAATTCTCTATCACCAATGAATTGTCAATTGATGTTAATAGTTATGCATTGATTCGTCCCACCCTTCCTGGAGCAATCACTTGGCTCGATTCTATCACAAATCGTCCGTTGAAGACAGAGAGATCATTCATTTGTGCGGATACAGGTGCATTATTTTCAGAACCCTCAAAGCGATTTCAGCTTTATAAAAATCAGGTAATTAAGTTCTCTGAGGAGGAGTTATCAGAGATCAAGAGGGTTGCTACTGGGCATCTTCGTCTTCTAGGTTTCAAGCCATTGAGTTGCTTAAAAGATTATCACAATTTACGGCCATCAACATTTTTATATCCTAGTGATCAGGAAATGGTTGGTAGCACTTGCATCTTCGTTGCCCTCCACAGATCCATGTTGAAGCTCAATCGTTTTGCAGTTGCTTTTTTTGGTAGTCCATCTCGCCCCCAGCTAGTTGCTCTTGTGGCCCAAGATGAGATTATTACTGCTGGGGGACAGCTCGAGCCACCAGGAATGCACATGTTATATTTGCCTTATGCTGATGATATCCGACATGTTGAGGAGCTTCATCCGGATCCTAATGTTGCACCTAAAGCGACTGATGATCAAGTTAAAAAGGCCGCTGCTTTAATGAAACGCATTGACTTGAAAGACTTCTCAGTTTGCCAGTTTGCTAATCCTGCCTTGCAGAGACATTATGCAGTACTGCAGGCTTTAGCCCTGGAAGAAGATGACATGCCCGAGGTTAACGACGAAACAGTCCCTGATGAAGAAGGAATGGCTAGACCTGGGGTTGTGAAGGCATTAGAAGAATTCAAGCTATCGGTTTATGGGGAAAATTACGAGGAAGAAGAAGCTGGTAAAGGAAAAGTGAGTGAAGCTTCAAAGAAGAGAAAAGCATTATCAGAGAGTGCTGCTCAGAAGTGTAAAGAATATGACTGGACCGACCTTGCTGACAATGGAAAGCTGAAGGAATTGTCGGTTGTCGAGTTGAAGTATTATTTGACCGCACACGATCTTCCCGTATCTGGAAAGAAGGAAGCCCTGATATGCAGGATACTATCACATATGGGAAAGTAG

Protein sequence

MDLDPDEVFRDDDDDPDNPLFQEKESTKELVVYLVDASPKMFSTTCASEHQKQETHFQVVLSCISQSLKTQIINRSYDEVSICFFNTREKKNLQDLNGVFVFNVFEREDLDRPTARLLKTVDSLEEVFMKEIGSQYGIVSGSRENSLYNAIWVAQALLRKGSAKTVDKRILLFTNEDDPFGSIKGATKFDLIRTTLQRAKDAQDLGISIELIPLSCPNEQFNISLFYADLIGLEGGELAQFVHSAGDRLEDMKDQLKKRMFKKRVVRSLKFSITNELSIDVNSYALIRPTLPGAITWLDSITNRPLKTERSFICADTGALFSEPSKRFQLYKNQVIKFSEEELSEIKRVATGHLRLLGFKPLSCLKDYHNLRPSTFLYPSDQEMVGSTCIFVALHRSMLKLNRFAVAFFGSPSRPQLVALVAQDEIITAGGQLEPPGMHMLYLPYADDIRHVEELHPDPNVAPKATDDQVKKAAALMKRIDLKDFSVCQFANPALQRHYAVLQALALEEDDMPEVNDETVPDEEGMARPGVVKALEEFKLSVYGENYEEEEAGKGKVSEASKKRKALSESAAQKCKEYDWTDLADNGKLKELSVVELKYYLTAHDLPVSGKKEALICRILSHMGK

Homology

[Close]

BLAST of CmaCh06G016280 vs. ExPASy Swiss-Prot
Match: Q7F1M0 (ATP-dependent DNA helicase 2 subunit KU70 OS=Oryza sativa subsp. japonica OX=39947 GN=KU70 PE=1 SV=1)

HSP 1 Score: 864.0 bits (2231), Expect = 1.0e-249
Identity = 417/626 (66.61%), Postives = 535/626 (85.46%), Query Frame = 0


Query: 1   MDLDPDEVFRDDDDDPDNPLFQEKESTKELVVYLVDASPKMFSTTCASEHQKQETHFQVV 60
           MDLDP+ +FRDD D+ D+ + QE+E+ KE+VVYL+DASPKMF T      +K+ETHF  +
Sbjct: 1   MDLDPEGLFRDDSDEDDDNV-QEREANKEMVVYLIDASPKMF-TPATKADEKEETHFHTI 60

Query: 61  LSCISQSLKTQIINRSYDEVSICFFNTREKKNLQDLNGVFVFNVFEREDLDRPTARLLKT 120
           ++CI+ +LKTQII RSYDEV+ICFFNT+EKKNLQ+L GV+V+NV ERE LDRP ARL+K 
Sbjct: 61  VNCITHALKTQIIGRSYDEVAICFFNTKEKKNLQELAGVYVYNVTEREPLDRPDARLIKE 120

Query: 121 VDSLEEVFMKEIGSQYGIVSGSRENSLYNAIWVAQALLRKGSAKTVDKRILLFTNEDDPF 180
              +E+ FM  IGS+YGI SGSREN+LYNA+WVAQALLRKGS KTV KRI++FTNEDDPF
Sbjct: 121 FSCIEDSFMSNIGSRYGITSGSRENTLYNALWVAQALLRKGSVKTVSKRIVIFTNEDDPF 180

Query: 181 GSIKGATKFDLIRTTLQRAKDAQDLGISIELIPLSCPNEQFNISLFYADLIGLEGGELAQ 240
           G + GA K D+IRTT+QRA+DAQDLG+SIEL+PLS P+E+FN+SLFYADLIGLEG E+  
Sbjct: 181 GGLTGAVKTDMIRTTIQRARDAQDLGLSIELLPLSRPDEEFNMSLFYADLIGLEGDEIVD 240

Query: 241 FVHSAGDRLEDMKDQLKKRMFKKRVVRSLKFSITNELSIDVNSYALIRPTLPGAITWLDS 300
           ++ S+G++LEDM +QLKKRM KKR V++L F+ITN++ I+VN+YALIR T PGAITWLDS
Sbjct: 241 YLPSSGEKLEDMTNQLKKRMMKKRKVKTLAFAITNDVCIEVNTYALIRSTTPGAITWLDS 300

Query: 301 ITNRPLKTERSFICADTGALFSEPSKRFQLYKNQVIKFSEEELSEIKRVATGHLRLLGFK 360
           I+N PLK ERSFIC DTGAL  +P KRFQ+Y ++++KFS  ELS++KRV++ HLRLLGFK
Sbjct: 301 ISNLPLKAERSFICNDTGALIQDPQKRFQVYNDKIVKFSTRELSDVKRVSSHHLRLLGFK 360

Query: 361 PLSCLKDYHNLRPSTFLYPSDQEMVGSTCIFVALHRSMLKLNRFAVAFFGSPSRPQLVAL 420
           PL  LKDYHNLRPSTF+YPSD+++ GST +FVALH SM +L RFA+AF+G+P+RPQLVAL
Sbjct: 361 PLDYLKDYHNLRPSTFIYPSDEQIFGSTRVFVALHSSMRRLGRFALAFYGNPTRPQLVAL 420

Query: 421 VAQDEIITAGGQLEPPGMHMLYLPYADDIRHVEELHPDPNVAPKATDDQVKKAAALMKRI 480
           +AQ+E+ +AGGQ+EPPG+HM+YLPY+DD+R+ EE+H   + AP+ATD+Q+KKA+ L++RI
Sbjct: 421 IAQEEVTSAGGQIEPPGIHMIYLPYSDDVRYPEEVHLTSDDAPRATDEQIKKASNLLRRI 480

Query: 481 DLKDFSVCQFANPALQRHYAVLQALALEEDDMPEVNDETVPDEEGMARPGVVKALEEFKL 540
           DLK+FSVCQF+NPALQRHY +L+ALAL ED+MP+V DET+PDEEG+ARP VVKA+EEFK 
Sbjct: 481 DLKNFSVCQFSNPALQRHYGILEALALGEDEMPDVKDETLPDEEGLARPVVVKAVEEFKA 540

Query: 541 SVYGENYEEEEA-GKGKVSEASKKRKALSESAAQKCKEYDWTDLADNGKLKELSVVELKY 600
           SVYGENY++EEA      + ASKKRKAL+++AA+K   ++W +LAD GKLK+++VV+LK 
Sbjct: 541 SVYGENYDQEEAEAAAAKAGASKKRKALTDAAAEKSAAHNWAELADTGKLKDMTVVDLKS 600

Query: 601 YLTAHDLPVSGKKEALICRILSHMGK 626
           YL+AH LPVSGKKEAL+ RIL+H+GK
Sbjct: 601 YLSAHGLPVSGKKEALVSRILTHLGK 624

[Close]

BLAST of CmaCh06G016280 vs. ExPASy Swiss-Prot
Match: Q9FQ08 (ATP-dependent DNA helicase 2 subunit KU70 OS=Arabidopsis thaliana OX=3702 GN=KU70 PE=1 SV=1)

HSP 1 Score: 844.7 bits (2181), Expect = 6.6e-244
Identity = 421/627 (67.15%), Postives = 523/627 (83.41%), Query Frame = 0


Query: 1   MDLDPDEVFRDDDDDPDNPLFQEKESTKELVVYLVDASPKMFSTTCASEHQ-KQETHFQV 60
           M+LDPD+VFRD+D+DP+N  FQEKE++KE VVYL+DASPKMF +TC SE + KQE+HF +
Sbjct: 1   MELDPDDVFRDEDEDPENDFFQEKEASKEFVVYLIDASPKMFCSTCPSEEEDKQESHFHI 60

Query: 61  VLSCISQSLKTQIINRSYDEVSICFFNTREKKNLQDLNGVFVFNVFEREDLDRPTARLLK 120
            +SCI+QSLK  IINRS DE++ICFFNTREKKNLQDLNGV+VFNV ER+ +DRPTARL+K
Sbjct: 61  AVSCIAQSLKAHIINRSNDEIAICFFNTREKKNLQDLNGVYVFNVPERDSIDRPTARLIK 120

Query: 121 TVDSLEEVFMKEIGSQYGIVSGSRENSLYNAIWVAQALLRKGSAKTVDKRILLFTNEDDP 180
             D +EE F KEIGSQ GIVS SRENSLY+A+WVAQALLRKGS KT DKR+ LFTNEDDP
Sbjct: 121 EFDLIEESFDKEIGSQTGIVSDSRENSLYSALWVAQALLRKGSLKTADKRMFLFTNEDDP 180

Query: 181 FGSIKGATKFDLIRTTLQRAKDAQDLGISIELIPLSCPNEQFNISLFYADLIGLEGGELA 240
           FGS++ + K D+ RTTLQRAKDAQDLGISIEL+PLS P++QFNI+LFY DLIGL   EL 
Sbjct: 181 FGSMRISVKEDMTRTTLQRAKDAQDLGISIELLPLSQPDKQFNITLFYKDLIGLNSDELT 240

Query: 241 QFVHSAGDRLEDMKDQLKKRMFKKRVVRSLKFSITNELSIDVNSYALIRPTLPGAITWLD 300
           +F+ S G +LEDMKDQLKKR+  KR+ + + F I + LSI++N YAL+RP +PG+ITWLD
Sbjct: 241 EFMPSVGQKLEDMKDQLKKRVLAKRIAKRITFVICDGLSIELNGYALLRPAIPGSITWLD 300

Query: 301 SITNRPLKTERSFICADTGALFSEPSKRFQLYKNQVIKFSEEELSEIKRVATGHLRLLGF 360
           S TN P+K ERS+IC DTGA+  +P +R Q YKNQ I F+ EELS++KR++TGHLRLLGF
Sbjct: 301 STTNLPVKVERSYICTDTGAIMQDPIQRIQPYKNQNIMFTVEELSQVKRISTGHLRLLGF 360

Query: 361 KPLSCLKDYHNLRPSTFLYPSDQEMVGSTCIFVALHRSMLKLNRFAVAFFGSPSRPQLVA 420
           KPLSCLKDYHNL+PSTFLYPSD+E++GST  F+ALHRSM++L RFAVAF+G  + P+LVA
Sbjct: 361 KPLSCLKDYHNLKPSTFLYPSDKEVIGSTRAFIALHRSMIQLERFAVAFYGGTTPPRLVA 420

Query: 421 LVAQDEIITAGGQLEPPGMHMLYLPYADDIRHVEELHPDPNV-APKATDDQVKKAAALMK 480
           LVAQDEI + GGQ+EPPG++M+YLPYA+DIR ++ELH  P V AP+A+DDQ+KKA+ALM+
Sbjct: 421 LVAQDEIESDGGQVEPPGINMIYLPYANDIRDIDELHSKPGVAAPRASDDQLKKASALMR 480

Query: 481 RIDLKDFSVCQFANPALQRHYAVLQALALEEDDMPEVNDETVPDEEGMARPGVVKALEEF 540
           R++LKDFSVCQFANPALQRHYA+LQA+AL+E+++ E  DET+PDEEGM RP VVKA+E+F
Sbjct: 481 RLELKDFSVCQFANPALQRHYAILQAIALDENELRETRDETLPDEEGMNRPAVVKAIEQF 540

Query: 541 KLSVYGENYEEEEAGKGKVSEASKKRKALSESAAQKCKEYDWTDLADNGKLKELSVVELK 600
           K S+YG++ +EE     K  E SKKRKA          +YD+ +LA  GKLK+L+VVELK
Sbjct: 541 KQSIYGDDPDEESDSGAK--EKSKKRKAGDADDG----KYDYIELAKTGKLKDLTVVELK 600

Query: 601 YYLTAHDLPVSGKKEALICRILSHMGK 626
            YLTA++L VSGKKE LI RIL+H+GK
Sbjct: 601 TYLTANNLLVSGKKEVLINRILTHIGK 621

[Close]

BLAST of CmaCh06G016280 vs. ExPASy Swiss-Prot
Match: O93257 (X-ray repair cross-complementing protein 5 OS=Gallus gallus OX=9031 GN=XRCC6 PE=2 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.9e-66
Identity = 197/627 (31.42%), Postives = 309/627 (49.28%), Query Frame = 0


Query: 5   PDEVFRDDDDDPDNP--LFQEKESTKELVVYLVDASPKMFSTTCASEHQKQETHFQVVLS 64
           PDE    +  + + P  +   + S ++ +++LVDAS  MF      E+++  T F + + 
Sbjct: 31  PDEEEDGEQQEEEGPEAVADYRFSGRDSLIFLVDASKAMFE---PYENEEAATPFDMTMQ 90

Query: 65  CISQSLKTQIINRSYDEVSICFFNTREKKNLQDLNGVFVFNVFEREDLDRPTARLLKTVD 124
           CI     ++II+   D +S+ F+     KN  D   ++V      ++LD P A+ +  +D
Sbjct: 91  CIRNVYTSKIISSDKDLLSVVFYGMENNKNSADFKHIYVL-----QELDNPGAKRILELD 150

Query: 125 SLE----EVFMKEIGSQYGIVSGSRENSLYNAIWVAQALLRKGSAKTVDKRILLFTNEDD 184
                   V  +E          + + SL  A+W    L      +   KRI+LFTNED+
Sbjct: 151 QYRGDEGRVLFRE------TFGHNADYSLGEALWACSNLFSDVRVRLSHKRIMLFTNEDN 210

Query: 185 PFGSIKGATKFDLIRTTLQRAKDAQDLGISIELIPLSCPNEQFNISLFYADLIGLEGGEL 244
           P  +   + K  L RT   RA D +D GI ++L+ L  P   F+ISLFY D+I +   E 
Sbjct: 211 PHAN--DSAKAKLART---RAGDLRDTGIILDLMHLKKPG-GFDISLFYRDIINVAEDED 270

Query: 245 AQFVHSAGDRLEDMKDQLKKRMFKKRVVRSLKFSITNELSIDVNSYALIRPTLPGAITWL 304
                    +LE +  +++ +  +KR +  L   +  +LS  V  Y LI+         L
Sbjct: 271 LGIQPDESGKLEHLMKKVRAKETRKRALSRLNLYLNKDLSFSVGVYNLIQKAYKPYPVKL 330

Query: 305 DSITNRPLKTERSFICADTGA-LFSEPSKRFQLYKNQVIKFSEEELSEIKRVATGHLRLL 364
              TN P+KT+       TG+ L    +KR Q Y N+ I   +EE  E+KR  +  L L+
Sbjct: 331 YRETNEPVKTKTRVFNGKTGSLLLPSDTKRAQTYGNRQIAMEKEETEEVKRFDSPGLFLI 390

Query: 365 GFKPLSCLKDYHNLRPSTFLYPSDQEMVGSTCIFVALHRSMLKLNRFAVAFF--GSPSRP 424
           GFKPLS LK +H++RPS F+YP +  + GST +F AL    L+    A+  +     + P
Sbjct: 391 GFKPLSMLKQHHHIRPSQFMYPEESLVTGSTTLFNALLMKCLEKEVMALCRYIARRNTPP 450

Query: 425 QLVALVAQDEIITAGG-QLEPPGMHMLYLPYADDIRHVEELHPDPNVAPKATDDQVKKAA 484
           ++VAL+ Q+E +     Q+ PPG H+++LPYADD R+V+     P     A  +QV K  
Sbjct: 451 RIVALIPQEEEVDEQKVQIAPPGFHIIFLPYADDKRNVDFTEKVP-----ANREQVDKMK 510

Query: 485 ALMKRIDLKDFSVCQFANPALQRHYAVLQALALEEDDMPEVNDETVPDEEGMARPGVVKA 544
            +++++  K +    F NP LQ+H+  L+ALAL+  +  +  D T+P  E M+R  +   
Sbjct: 511 GIIQKLRFK-YRTDSFENPVLQQHFRNLEALALDMLEPEQAEDLTMPKTEEMSR-RLGNL 570

Query: 545 LEEFKLSVYGENYEEEEAGKGKVSEASKKRKALSESAAQK-----CKEYDWTDLADNGKL 604
           +EEFK  VY  +Y  E    GK +    KRK   ++ A+K       E        NG L
Sbjct: 571 VEEFKQLVYPPDYSPE----GKAA----KRKQAGDAQAEKRPKIEISEDSLRSYVQNGTL 622

Query: 605 KELSVVELKYYLTAHDLPVSGKKEALI 617
            +L+V  LK     + L   GKK+ LI
Sbjct: 631 GKLTVSALKDTCRHYGLRSGGKKQELI 622

[Close]

BLAST of CmaCh06G016280 vs. ExPASy Swiss-Prot
Match: Q54MA9 (ATP-dependent DNA helicase ku70 OS=Dictyostelium discoideum OX=44689 GN=ku70 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.3e-63
Identity = 197/725 (27.17%), Postives = 334/725 (46.07%), Query Frame = 0


Query: 4   DPDEVFRDDDDDPDNPL-------FQEKESTKELVVYLVDASPKMFSTTCASEHQKQETH 63
           D D +F  ++ D D  L       +Q   S ++ +++L+DAS  MF       ++  E  
Sbjct: 39  DWDNIFDGNNGDGDGDLDGDSYKSYQNPYSYRDCIIFLIDASKAMF-----EPNENNEIP 98

Query: 64  FQVVLSCISQSLKTQIINRSYDEVSICFFNTREKKNLQDLNGVFVFNVFEREDLDRPTAR 123
           F   + C+ Q++  +II    D + +CF+NT +KKN+ D   ++V +     DLD P  +
Sbjct: 99  FHNAVKCLIQTITDKIITSDSDLIGVCFYNTNKKKNINDFENIYVLS-----DLDIPDPK 158

Query: 124 LLKTVDSLEEVFMKEIGSQYGIVSGSRENSLYNAIWVAQALL----RKGSAKTVD----- 183
           ++ T   LEE+      +  G+ +   E    +A+W    +     + GS+   +     
Sbjct: 159 IILT---LEEMLENSNFTTNGLGNCQGEMPFCDALWTCSTMFSNIKQSGSSSGENSNNNN 218

Query: 184 -KRILLFTNEDDPFGSIKGATKFDLIRTTLQRAKDAQDLGISIELIPLS-CPNEQFNISL 243
            KRI LFTNED+P      A    +  +++QR+KD  DL I IEL  ++   N++F+ SL
Sbjct: 219 FKRIFLFTNEDNP-----NAYNDSIRNSSIQRSKDLSDLNIQIELFSMNKSVNDKFDFSL 278

Query: 244 FYADLI--GLEGGELAQFVHSAGDRLEDMKDQLKKRMFKKRVVRSLKF------------ 303
           FY  ++    E   L      A  +  D++ +LK++ FKKR +  L              
Sbjct: 279 FYQHILIFADEENYLDPTQFDASSKFSDLRFKLKRKEFKKRSLGKLPLYIGNLNNNNNNS 338

Query: 304 -SITNELSIDVNSYALIRPTLPGAITWLDSITNRPLKTERSFICADTGA-LFSEPSKRFQ 363
            S+ +++ I    Y L       + T LD  TN P+K     +CA+T A L     K   
Sbjct: 339 NSLDSQVIISTQLYNLFSHAHKSSPTLLDPKTNLPVKQLIKNVCANTQATLLPSQIKLCY 398

Query: 364 LYKNQVIKFSEEELSEIKRVATGHLRLLGFKPLSCLKDYHNLRPSTFLYPSDQEMVGSTC 423
            Y  + + F+++E+  IK +      LLGFKPL  +K YH+++ S F++P DQ + GS  
Sbjct: 399 HYGGEPVIFTKDEMQTIKSIDRIGFTLLGFKPLENIKPYHSIKHSQFIFPDDQSIKGSVL 458

Query: 424 IFVALHRSMLKLNRFAVAFF--GSPSRPQLVALVAQDEIITAGG---------------- 483
            F AL   MLK  + A+  F   S S P++VAL+ Q+EI+ +                  
Sbjct: 459 AFNALVEQMLKSGKAAICRFTPRSSSSPRMVALIPQEEILQSESEFNNQQLLNSLSSQQQ 518

Query: 484 ----------------------------------------------QLEPPGMHMLYLPY 543
                                                         Q+ P GMH++YLP+
Sbjct: 519 QQQSSQQSSSSQQQQQQQQQQQQQQQQQQQQQLPSSSQQSNNNRKIQIRPRGMHVIYLPF 578

Query: 544 ADDIRHVEELHPDPNVAPKATDDQVKKAAALMKRIDLKDFSVCQFANPALQRHYAVLQAL 603
           ADDIR+   +    +   +   + + KA  ++K + +K F   +F NP LQ+HYA LQA+
Sbjct: 579 ADDIRYPNNIGVKSD-GLEIKQENIDKAKNIIKMMKIK-FDEKKFVNPGLQKHYASLQAI 638

Query: 604 ALEEDDMPEVNDETVPDEEGMARPGVVKALEEFKLSVYGENYEEEEAGKGKVSEASKKRK 624
           ALE D + E  D   PD + + +  V+   ++F   ++   Y          S  S    
Sbjct: 639 ALERDKVEETVDNIQPDRKLIEK--VIDTTQDFSDGIFPVGY---------ASTVSSATS 698

[Close]

BLAST of CmaCh06G016280 vs. ExPASy Swiss-Prot
Match: P12956 (X-ray repair cross-complementing protein 6 OS=Homo sapiens OX=9606 GN=XRCC6 PE=1 SV=2)

HSP 1 Score: 237.3 bits (604), Expect = 4.8e-61
Identity = 191/629 (30.37%), Postives = 316/629 (50.24%), Query Frame = 0


Query: 6   DEVFRDDDDDPDNPLFQEKESTKELVVYLVDASPKMFSTTCASEHQKQETHFQVVLSCIS 65
           DE   ++ ++        K S ++ +++LVDAS  MF     S+ + + T F + + CI 
Sbjct: 13  DEEAEEEQEENLEASGDYKYSGRDSLIFLVDASKAMFE----SQSEDELTPFDMSIQCIQ 72

Query: 66  QSLKTQIINRSYDEVSICFFNTREKKNLQDLNGVFVFNVFEREDLDRPTARLLKTVDSLE 125
               ++II+   D +++ F+ T + KN  +   ++V      ++LD P A+ +  +D   
Sbjct: 73  SVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVL-----QELDNPGAKRILELDQ-- 132

Query: 126 EVFMKEIGSQ--YGIVSGSRENSLYNAIWVAQALLRKGSAKTVDKRILLFTNEDDPFGSI 185
             F  + G +    ++    + SL   +WV   L      K   KRI+LFTNED+P G+ 
Sbjct: 133 --FKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGN- 192

Query: 186 KGATKFDLIRTTLQRAKDAQDLGISIELIPLSCPNEQFNISLFYADLIGLEGGELAQFVH 245
             + K    RT   +A D +D GI ++L+ L  P   F+ISLFY D+I +   E  +   
Sbjct: 193 -DSAKASRART---KAGDLRDTGIFLDLMHLKKPG-GFDISLFYRDIISIAEDEDLRVHF 252

Query: 246 SAGDRLEDMKDQLKKRMFKKRVVRSLKFSITNELSIDVNSYALIRPTLPGAITWLDSITN 305
               +LED+  +++ +  +KR +  LK  +  ++ I V  Y L++  L      L   TN
Sbjct: 253 EESSKLEDLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETN 312

Query: 306 RPLKTE-RSFICADTGALFSEPSKRFQLYKNQVIKFSEEELSEIKRVATGHLRLLGFKPL 365
            P+KT+ R+F  +  G L    +KR Q+Y ++ I   +EE  E+KR     L L+GFKPL
Sbjct: 313 EPVKTKTRTFNTSTGGLLLPSDTKRSQIYGSRQIILEKEETEELKRFDDPGLMLMGFKPL 372

Query: 366 SCLKDYHNLRPSTFLYPSDQEMVGSTCIFVALHRSMLKLNRFAVAFFGSPSR---PQLVA 425
             LK +H LRPS F+YP +  ++GS+ +F AL    L+    A+  + +P R   P  VA
Sbjct: 373 VLLKKHHYLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRY-TPRRNIPPYFVA 432

Query: 426 LVAQDEIITAGG-QLEPPGMHMLYLPYADDIRHVEELHPDPNVAPKATDDQVKKAAALMK 485
           LV Q+E +     Q+ PPG  +++LP+ADD R +            AT +QV K  A+++
Sbjct: 433 LVPQEEELDDQKIQVTPPGFQLVFLPFADDKRKMPFTE-----KIMATPEQVGKMKAIVE 492

Query: 486 RIDLKDFSVCQFANPALQRHYAVLQALALEEDDMPEVNDETVPDEEGMARPGVVKALEEF 545
           ++    +    F NP LQ+H+  L+ALAL+  +  +  D T+P  E M +  +   ++EF
Sbjct: 493 KLRF-TYRSDSFENPVLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMNK-RLGSLVDEF 552

Query: 546 KLSVYGENYEEEEAGKGKVSEASKKRKALSESAAQKCKEYDWTD-----LADNGKLKELS 605
           K  VY  +Y  E    GKV+    KRK  +E +  K  + ++++         G L + +
Sbjct: 553 KELVYPPDYNPE----GKVT----KRKHDNEGSGSKRPKVEYSEEELKTHISKGTLGKFT 606

Query: 606 VVELKYYLTAHDLPVSGKKEALICRILSH 623
           V  LK    A+ L    KK+ L+  +  H
Sbjct: 613 VPMLKEACRAYGLKSGLKKQELLEALTKH 606

[Close]

BLAST of CmaCh06G016280 vs. TAIR 10
Match: AT1G16970.1 (KU70 homolog )

HSP 1 Score: 844.7 bits (2181), Expect = 4.7e-245
Identity = 421/627 (67.15%), Postives = 523/627 (83.41%), Query Frame = 0


Query: 1   MDLDPDEVFRDDDDDPDNPLFQEKESTKELVVYLVDASPKMFSTTCASEHQ-KQETHFQV 60
           M+LDPD+VFRD+D+DP+N  FQEKE++KE VVYL+DASPKMF +TC SE + KQE+HF +
Sbjct: 1   MELDPDDVFRDEDEDPENDFFQEKEASKEFVVYLIDASPKMFCSTCPSEEEDKQESHFHI 60

Query: 61  VLSCISQSLKTQIINRSYDEVSICFFNTREKKNLQDLNGVFVFNVFEREDLDRPTARLLK 120
            +SCI+QSLK  IINRS DE++ICFFNTREKKNLQDLNGV+VFNV ER+ +DRPTARL+K
Sbjct: 61  AVSCIAQSLKAHIINRSNDEIAICFFNTREKKNLQDLNGVYVFNVPERDSIDRPTARLIK 120

Query: 121 TVDSLEEVFMKEIGSQYGIVSGSRENSLYNAIWVAQALLRKGSAKTVDKRILLFTNEDDP 180
             D +EE F KEIGSQ GIVS SRENSLY+A+WVAQALLRKGS KT DKR+ LFTNEDDP
Sbjct: 121 EFDLIEESFDKEIGSQTGIVSDSRENSLYSALWVAQALLRKGSLKTADKRMFLFTNEDDP 180

Query: 181 FGSIKGATKFDLIRTTLQRAKDAQDLGISIELIPLSCPNEQFNISLFYADLIGLEGGELA 240
           FGS++ + K D+ RTTLQRAKDAQDLGISIEL+PLS P++QFNI+LFY DLIGL   EL 
Sbjct: 181 FGSMRISVKEDMTRTTLQRAKDAQDLGISIELLPLSQPDKQFNITLFYKDLIGLNSDELT 240

Query: 241 QFVHSAGDRLEDMKDQLKKRMFKKRVVRSLKFSITNELSIDVNSYALIRPTLPGAITWLD 300
           +F+ S G +LEDMKDQLKKR+  KR+ + + F I + LSI++N YAL+RP +PG+ITWLD
Sbjct: 241 EFMPSVGQKLEDMKDQLKKRVLAKRIAKRITFVICDGLSIELNGYALLRPAIPGSITWLD 300

Query: 301 SITNRPLKTERSFICADTGALFSEPSKRFQLYKNQVIKFSEEELSEIKRVATGHLRLLGF 360
           S TN P+K ERS+IC DTGA+  +P +R Q YKNQ I F+ EELS++KR++TGHLRLLGF
Sbjct: 301 STTNLPVKVERSYICTDTGAIMQDPIQRIQPYKNQNIMFTVEELSQVKRISTGHLRLLGF 360

Query: 361 KPLSCLKDYHNLRPSTFLYPSDQEMVGSTCIFVALHRSMLKLNRFAVAFFGSPSRPQLVA 420
           KPLSCLKDYHNL+PSTFLYPSD+E++GST  F+ALHRSM++L RFAVAF+G  + P+LVA
Sbjct: 361 KPLSCLKDYHNLKPSTFLYPSDKEVIGSTRAFIALHRSMIQLERFAVAFYGGTTPPRLVA 420

Query: 421 LVAQDEIITAGGQLEPPGMHMLYLPYADDIRHVEELHPDPNV-APKATDDQVKKAAALMK 480
           LVAQDEI + GGQ+EPPG++M+YLPYA+DIR ++ELH  P V AP+A+DDQ+KKA+ALM+
Sbjct: 421 LVAQDEIESDGGQVEPPGINMIYLPYANDIRDIDELHSKPGVAAPRASDDQLKKASALMR 480

Query: 481 RIDLKDFSVCQFANPALQRHYAVLQALALEEDDMPEVNDETVPDEEGMARPGVVKALEEF 540
           R++LKDFSVCQFANPALQRHYA+LQA+AL+E+++ E  DET+PDEEGM RP VVKA+E+F
Sbjct: 481 RLELKDFSVCQFANPALQRHYAILQAIALDENELRETRDETLPDEEGMNRPAVVKAIEQF 540

Query: 541 KLSVYGENYEEEEAGKGKVSEASKKRKALSESAAQKCKEYDWTDLADNGKLKELSVVELK 600
           K S+YG++ +EE     K  E SKKRKA          +YD+ +LA  GKLK+L+VVELK
Sbjct: 541 KQSIYGDDPDEESDSGAK--EKSKKRKAGDADDG----KYDYIELAKTGKLKDLTVVELK 600

Query: 601 YYLTAHDLPVSGKKEALICRILSHMGK 626
            YLTA++L VSGKKE LI RIL+H+GK
Sbjct: 601 TYLTANNLLVSGKKEVLINRILTHIGK 621

The following BLAST results are available for this feature:

BLAST of CmaCh06G016280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7F1M0	1.0e-249	66.61	ATP-dependent DNA helicase 2 subunit KU70 OS=Oryza sativa subsp. japonica OX=399...	[more]
Q9FQ08	6.6e-244	67.15	ATP-dependent DNA helicase 2 subunit KU70 OS=Arabidopsis thaliana OX=3702 GN=KU7...	[more]
O93257	2.9e-66	31.42	X-ray repair cross-complementing protein 5 OS=Gallus gallus OX=9031 GN=XRCC6 PE=...	[more]
Q54MA9	1.3e-63	27.17	ATP-dependent DNA helicase ku70 OS=Dictyostelium discoideum OX=44689 GN=ku70 PE=...	[more]
P12956	4.8e-61	30.37	X-ray repair cross-complementing protein 6 OS=Homo sapiens OX=9606 GN=XRCC6 PE=1...	[more]

BLAST of CmaCh06G016280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16970.1	4.7e-245	67.15	KU70 homolog	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006164	Ku70/Ku80 beta-barrel domain	SMART	SM00559	ku_4	coord: 317..460 e-value: 2.3E-41 score: 153.4
IPR006164	Ku70/Ku80 beta-barrel domain	PFAM	PF02735	Ku	coord: 274..471 e-value: 1.4E-40 score: 139.1
IPR003034	SAP domain	SMART	SM00513	sap_9	coord: 589..623 e-value: 0.002 score: 27.4
IPR003034	SAP domain	PFAM	PF02037	SAP	coord: 589..622 e-value: 1.0E-6 score: 28.4
IPR003034	SAP domain	PROSITE	PS50800	SAP	coord: 589..623 score: 9.187071
IPR016194	SPOC-like, C-terminal domain superfamily	GENE3D	2.40.290.10		coord: 264..445 e-value: 5.3E-51 score: 175.2
IPR016194	SPOC-like, C-terminal domain superfamily	SUPERFAMILY	100939	SPOC domain-like	coord: 264..544
IPR005160	Ku70/Ku80 C-terminal arm	PFAM	PF03730	Ku_C	coord: 484..576 e-value: 3.0E-19 score: 69.5
IPR006165	Ku70	TIGRFAM	TIGR00578	TIGR00578	coord: 26..622 e-value: 3.2E-98 score: 327.5
IPR006165	Ku70	PIRSF	PIRSF003033	Ku70	coord: 1..625 e-value: 1.7E-105 score: 351.3
IPR006165	Ku70	PANTHER	PTHR12604:SF2	X-RAY REPAIR CROSS-COMPLEMENTING PROTEIN 6	coord: 2..625
None	No IPR available	GENE3D	1.10.1600.10		coord: 446..546 e-value: 1.3E-26 score: 94.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR12604	KU AUTOANTIGEN DNA HELICASE	coord: 2..625
None	No IPR available	CDD	cd01458	vWA_ku	coord: 28..259 e-value: 3.38337E-51 score: 174.089
None	No IPR available	CDD	cd00788	KU70	coord: 264..539 e-value: 3.1426E-89 score: 276.854
IPR027388	Ku70, bridge and pillars domain superfamily	GENE3D	4.10.970.10	Ku70, bridge and pillars	coord: 289..350 e-value: 5.3E-51 score: 175.2
IPR036465	von Willebrand factor A-like domain superfamily	GENE3D	3.40.50.410	von Willebrand factor, type A domain	coord: 28..260 e-value: 3.9E-54 score: 185.4
IPR036465	von Willebrand factor A-like domain superfamily	SUPERFAMILY	53300	vWA-like	coord: 28..263
IPR005161	Ku70/Ku80, N-terminal alpha/beta	PFAM	PF03731	Ku_N	coord: 31..264 e-value: 1.1E-55 score: 188.8
IPR036361	SAP domain superfamily	GENE3D	1.10.720.30	SAP domain	coord: 567..625 e-value: 6.5E-7 score: 30.8
IPR036361	SAP domain superfamily	SUPERFAMILY	68906	SAP domain	coord: 577..623

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G016280.1	CmaCh06G016280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006303	double-strand break repair via nonhomologous end joining
biological_process	GO:0009408	response to heat
biological_process	GO:0000723	telomere maintenance
cellular_component	GO:0043564	Ku70:Ku80 complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0003678	DNA helicase activity
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0042162	telomeric DNA binding
molecular_function	GO:0003677	DNA binding