CmaCh06G016220 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G016220
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	ras-related protein RABA5d-like
Location	Cma_Chr06: 10094008 .. 10096851 (+)
RNA-Seq Expression	CmaCh06G016220
Synteny	CmaCh06G016220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTACATATTTAATTCCCAAAATTTAGTGGAATAATAAGCTTAATTCTTCTTTTTCCATGTAAAATAATTGCAAATGGGTCCCTCCCTACAATTCTTTTTTGTTGCTTTGACTTTTTTCGAGTCGGGAAATCTATCTTTGACCGTCTTTTCGTTATTCGCATTCAAATCCTTGGTTGTCGATTTTTTAAAAATTCTGTTTATCTCAGACAATCGTTTTTAGTCAATGAAGATTCGTTGAAGCTAGAAATTTTGGATTTATATAAACCCGGGTGAACGGTAAGAGAACAACTTATTCTTCCTGGGACAGTTTGCTCTTGGCGGCTCAATTTCCTTTGAATTAATAAGGTTTTGACGAGAGAGGGTCAGGAGGTTATATTTCTAGGAGCGAACCATAGTAAGTCGAGAAAGACGGATACTACTAAAAAAGTCAAAGCTTTTTTTCCAGCTAAGAAAATTAAATAAAACTAAGCTTTTAAATTTTGTTTGGACGGAGTGACTCTATGGATGGTTGATTAAAAAATTAAAGAAAATAACAAAAAAAAATGTAATTAATATTAATGCAAAATAAAATGGAAGGAAAATTGGAAGGCATATAATAAAAGGGGCGTTCCCACTAGCACTACATGCGCAGGGTGTCTCTCTGACAGCTCTGTTTCTTCATCCTCCATTCCATTATTGCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTTCTTTCTCTCTCTAAAAAGTTGCAGAGAAAGAGAAGTAGAGGCAGAATCGAAGGCTGAGCAATGTCGTCGTCTGATGATGAAGGCGGCGAGGAGTATCTCTTCAAGATCGTCATAATCGGAGATTCGGCTGTCGGGAAATCCAATTTGTTGTCTCGTTATGCCAGAAACGAATTCAATCTCCACTCCAAGGCCACAATCGGCGTCGAATTTCAGACGCAGGTTATGGATATCGACGGCAAAGAAGTTAAGGCTCAGATTTGGGATACTGCCGGCCAAGAGCGGTTCCGCGCCGTCACCTCTGCATACTATCGCGGCGCTGTCGGTGCGCTCATCGTTTATGATATCAGCCGCCGCTCCACTTTCGACAGTGTCGGTCGATGGCTAGACGAGCTCAAGAGTGAGTGCCTGCCTCAACTTTTTCCTCTCTATTCTTTTTGATCTTGGTCTTCTCTGGCTTTTAGGTTGAGATGTCTAGATCTGGACTCTTCTCTTTTTGGAATTTGGTTGTAGTGATTTGATTTTGTTCAATTACTTGAACTAACTTCATAGTATGAAATAGATAGCCATTCTTGATTCTTTGAAATAATTCAGATCTGATCCTATTTTCTCTGTAGAACTACTGGCGATTAAGTAATGAAATTCAGTAAGATTTTGCTTGTTCATTCCTTATTAGCACCAAATTTGATGCTTAATTCATCATTGTTTTCTTGTCATTATCAAGCTCGAGTTTCTCTCAAGTTTCAAATGATGAAATGTTTCGATAAATTACAAATCAAGTAAGAAAGAAAGAAAGAAAGAAAGTTCATAGCCTCATCTTGATGAATCTCATATCCTAGATATTAATGGAAGTGCAAGTACTTGATGAAGCTCATAGCCTCATCTTGTAGCTGAAACGAAGTTCGTTTAAATTCTACTTTGATCCTTGAAACGTTTACCACTTGCTCTATTTTGATCCTTGTACTTTTGAAATATTCGGGTTTGCTCCGTAAGCTCGTGCATTTGTTCGTTTTAGTCGTAATGTGAAACTTTGTTGGCAAATTTAGATACGAATTTGATGCAAATTTACATCCAAGGATCAACTTTGTCGGTTTTGTCACCATCCTCGGATACCATATTCGTTATCGCATATTGGGCGAGTTCATTTGGTTATGGTGTCTCTGGGTGGGACAGTCGTACAGAGCTATCTTGTTGATCCTATAACACAGCTTACAGACAAGATTTAGTTTCGAATTTGGGTGGACATATTGGCTTGGAAAATGATCAGTTTGATGTTGCGAGATCCCACGTCGATTGGACAAGAGAACGAACCCTTCTTTATAAGCTCGAAAAGGAAAACCCCAAAAAGGACAATATATGCTAGGGGTGGTCTTGGGCGTTATAGAAGTTATCATCAGCTGCACATGCTTGATTTCTCTGTTCAATTGTTTCTGTCTTAGAGTTGCTGTCTTTCACCCATTTGCTGGTGAATTAATGCCTATCTGATTGCTTTAAACTATGAGTTTTGATATCTTATTGAAATCGTTATGCAGCTCATTCCGAAACGACAGTGGCAAGGATGCTAGTCGGGAACAAATGTGACTTGGATAACATCAGGGACGTGAGTATTGAGGAAGGCACGAGTCTAGCAGAGGCCGAAGGGTTGTTCTTCATGGAAACGTCAGCTCTAGACTCGACAAATGTTAAAAGGGCATTCGAGATCGTGATCCGAGAAATATACAACAATGTCAGCAGGAAGGTCCTGAACTCGGATACCTACAAAGCAGAATTATCCGTTAACCGGGTGAGCCTCGTCAACAACGGTGGATCTAAGCAATCGGAGAGCTATTTGTCTTGCTGTCCAAGGTGATGTTCATCTCTTAAGCTCCGAGAGTTGAGTGATTTCTGGTTCTGTTGGTCTGGTGATTCAAATTGGTTGTTTTTCTGTTTGTTTCCTTTATAGTTTCTCTCCAGCCTCTTCCAATTCAATCTAAAGACCATTTGCCATATATAGAAATGAAATTATTTCTTTGAATTTAATTAAGACAAGAAACTCTTTTGTATTAATTATTATTTGAAGCAAATAGTAAGAACAGATACGAACACATATTCTTGGATGAATCATTATC

mRNA sequence

TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTACATATTTAATTCCCAAAATTTAGTGGAATAATAAGCTTAATTCTTCTTTTTCCATGTAAAATAATTGCAAATGGGTCCCTCCCTACAATTCTTTTTTGTTGCTTTGACTTTTTTCGAGTCGGGAAATCTATCTTTGACCGTCTTTTCGTTATTCGCATTCAAATCCTTGGTTGTCGATTTTTTAAAAATTCTGTTTATCTCAGACAATCGTTTTTAGTCAATGAAGATTCGTTGAAGCTAGAAATTTTGGATTTATATAAACCCGGGTGAACGGTAAGAGAACAACTTATTCTTCCTGGGACAGTTTGCTCTTGGCGGCTCAATTTCCTTTGAATTAATAAGGTTTTGACGAGAGAGGGTCAGGAGGTTATATTTCTAGGAGCGAACCATAGTAAGTCGAGAAAGACGGATACTACTAAAAAAGTCAAAGCTTTTTTTCCAGCTAAGAAAATTAAATAAAACTAAGCTTTTAAATTTTGTTTGGACGGAGTGACTCTATGGATGGTTGATTAAAAAATTAAAGAAAATAACAAAAAAAAATGTAATTAATATTAATGCAAAATAAAATGGAAGGAAAATTGGAAGGCATATAATAAAAGGGGCGTTCCCACTAGCACTACATGCGCAGGGTGTCTCTCTGACAGCTCTGTTTCTTCATCCTCCATTCCATTATTGCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTTCTTTCTCTCTCTAAAAAGTTGCAGAGAAAGAGAAGTAGAGGCAGAATCGAAGGCTGAGCAATGTCGTCGTCTGATGATGAAGGCGGCGAGGAGTATCTCTTCAAGATCGTCATAATCGGAGATTCGGCTGTCGGGAAATCCAATTTGTTGTCTCGTTATGCCAGAAACGAATTCAATCTCCACTCCAAGGCCACAATCGGCGTCGAATTTCAGACGCAGGTTATGGATATCGACGGCAAAGAAGTTAAGGCTCAGATTTGGGATACTGCCGGCCAAGAGCGGTTCCGCGCCGTCACCTCTGCATACTATCGCGGCGCTGTCGGTGCGCTCATCGTTTATGATATCAGCCGCCGCTCCACTTTCGACAGTGTCGGTCGATGGCTAGACGAGCTCAAGACTCATTCCGAAACGACAGTGGCAAGGATGCTAGTCGGGAACAAATGTGACTTGGATAACATCAGGGACGTGAGTATTGAGGAAGGCACGAGTCTAGCAGAGGCCGAAGGGTTGTTCTTCATGGAAACGTCAGCTCTAGACTCGACAAATGTTAAAAGGGCATTCGAGATCGTGATCCGAGAAATATACAACAATGTCAGCAGGAAGGTCCTGAACTCGGATACCTACAAAGCAGAATTATCCGTTAACCGGGTGAGCCTCGTCAACAACGGTGGATCTAAGCAATCGGAGAGCTATTTGTCTTGCTGTCCAAGGTGATGTTCATCTCTTAAGCTCCGAGAGTTGAGTGATTTCTGGTTCTGTTGGTCTGGTGATTCAAATTGGTTGTTTTTCTGTTTGTTTCCTTTATAGTTTCTCTCCAGCCTCTTCCAATTCAATCTAAAGACCATTTGCCATATATAGAAATGAAATTATTTCTTTGAATTTAATTAAGACAAGAAACTCTTTTGTATTAATTATTATTTGAAGCAAATAGTAAGAACAGATACGAACACATATTCTTGGATGAATCATTATC

Coding sequence (CDS)

ATGTCGTCGTCTGATGATGAAGGCGGCGAGGAGTATCTCTTCAAGATCGTCATAATCGGAGATTCGGCTGTCGGGAAATCCAATTTGTTGTCTCGTTATGCCAGAAACGAATTCAATCTCCACTCCAAGGCCACAATCGGCGTCGAATTTCAGACGCAGGTTATGGATATCGACGGCAAAGAAGTTAAGGCTCAGATTTGGGATACTGCCGGCCAAGAGCGGTTCCGCGCCGTCACCTCTGCATACTATCGCGGCGCTGTCGGTGCGCTCATCGTTTATGATATCAGCCGCCGCTCCACTTTCGACAGTGTCGGTCGATGGCTAGACGAGCTCAAGACTCATTCCGAAACGACAGTGGCAAGGATGCTAGTCGGGAACAAATGTGACTTGGATAACATCAGGGACGTGAGTATTGAGGAAGGCACGAGTCTAGCAGAGGCCGAAGGGTTGTTCTTCATGGAAACGTCAGCTCTAGACTCGACAAATGTTAAAAGGGCATTCGAGATCGTGATCCGAGAAATATACAACAATGTCAGCAGGAAGGTCCTGAACTCGGATACCTACAAAGCAGAATTATCCGTTAACCGGGTGAGCCTCGTCAACAACGGTGGATCTAAGCAATCGGAGAGCTATTTGTCTTGCTGTCCAAGGTGA

Protein sequence

MSSSDDEGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNLHSKATIGVEFQTQVMDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDISRRSTFDSVGRWLDELKTHSETTVARMLVGNKCDLDNIRDVSIEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGGSKQSESYLSCCPR

Homology

[Close]

BLAST of CmaCh06G016220 vs. ExPASy Swiss-Prot
Match: Q9SIP0 (Ras-related protein RABA5d OS=Arabidopsis thaliana OX=3702 GN=RABA5D PE=1 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 7.9e-96
Identity = 179/215 (83.26%), Postives = 196/215 (91.16%), Query Frame = 0


Query: 3   SSDDEGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNLHSKATIGVEFQTQVMDIDGKEV 62
           SSDDEGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFN HSKATIGVEFQTQ M+I+GKEV
Sbjct: 2   SSDDEGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNAHSKATIGVEFQTQNMEIEGKEV 61

Query: 63  KAQIWDTAGQERFRAVTSAYYRGAVGALIVYDISRRSTFDSVGRWLDELKTHSETTVARM 122
           KAQIWDTAGQERFRAVTSAYYRGAVGAL+VYDISRRSTF+SVGRWLDELKTHS+TTVARM
Sbjct: 62  KAQIWDTAGQERFRAVTSAYYRGAVGALVVYDISRRSTFESVGRWLDELKTHSDTTVARM 121

Query: 123 LVGNKCDLDNIRDVSIEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKV 182
           LVGNKCDL++IR VS+EEG +LAE EGLFFMETSALDSTNVK AFE+VIR+IY N+SRK 
Sbjct: 122 LVGNKCDLESIRAVSVEEGKALAETEGLFFMETSALDSTNVKTAFEMVIRDIYTNISRKQ 181

Query: 183 LNSDTYKAELSV-NRVSLVNNGGSKQSESY-LSCC 216
           LNSDTYK ELS+ NRVSLV +     ++ +  SCC
Sbjct: 182 LNSDTYKTELSMKNRVSLVKDDNKSSTQGFGFSCC 216

[Close]

BLAST of CmaCh06G016220 vs. ExPASy Swiss-Prot
Match: P19892 (Ras-related protein RABA5e OS=Arabidopsis thaliana OX=3702 GN=RABA5E PE=2 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 3.3e-94
Identity = 178/215 (82.79%), Postives = 197/215 (91.63%), Query Frame = 0


Query: 3   SSDDEGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNLHSKATIGVEFQTQVMDIDGKEV 62
           SSDDEG EEYLFKIV+IGDSAVGKSNLLSRYARNEF+ +SKATIGVEFQTQ M+I+GKEV
Sbjct: 2   SSDDEGREEYLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEV 61

Query: 63  KAQIWDTAGQERFRAVTSAYYRGAVGALIVYDISRRSTFDSVGRWLDELKTHSETTVARM 122
           KAQIWDTAGQERFRAVTSAYYRGAVGAL+VYDI+RR+TF+SVGRWLDELK HS+TTVARM
Sbjct: 62  KAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARM 121

Query: 123 LVGNKCDLDNIRDVSIEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKV 182
           LVGNKCDL+NIR VS+EEG +LAE EGLFF+ETSALDSTNVK AFE+VI +IYNNVSRK 
Sbjct: 122 LVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVSRKQ 181

Query: 183 LNSDTYKAELSVNRVSLV--NNGGSKQSESYLSCC 216
           LNSDTYK EL+VNRVSLV  +N  SKQS  + SCC
Sbjct: 182 LNSDTYKDELTVNRVSLVKDDNSASKQSSGF-SCC 215

[Close]

BLAST of CmaCh06G016220 vs. ExPASy Swiss-Prot
Match: P28187 (Ras-related protein RABA5c OS=Arabidopsis thaliana OX=3702 GN=RABA5C PE=1 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 1.4e-92
Identity = 173/215 (80.47%), Postives = 192/215 (89.30%), Query Frame = 0


Query: 3   SSDDEGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNLHSKATIGVEFQTQVMDIDGKEV 62
           S DDE GEEYLFKIVIIGDSAVGKSNLL+RYARNEFN +SKATIGVEFQTQ M IDGKEV
Sbjct: 2   SDDDERGEEYLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEV 61

Query: 63  KAQIWDTAGQERFRAVTSAYYRGAVGALIVYDISRRSTFDSVGRWLDELKTHSETTVARM 122
           KAQIWDTAGQERFRAVTSAYYRGAVGAL+VYDI+R STF++VGRWLDEL THS+TTVA+M
Sbjct: 62  KAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKM 121

Query: 123 LVGNKCDLDNIRDVSIEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKV 182
           L+GNKCDL++IR VS+EEG SLAE+EGLFFMETSALDSTNVK AFE+VIREIY+N+SRK 
Sbjct: 122 LIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQ 181

Query: 183 LNSDTYKAELSVNRVSLVNNGGSKQSESYLSCCPR 218
           LNSD+YK EL+VNRVSLV N    +     SCC R
Sbjct: 182 LNSDSYKEELTVNRVSLVKN--ENEGTKTFSCCSR 214

[Close]

BLAST of CmaCh06G016220 vs. ExPASy Swiss-Prot
Match: Q9SRS5 (Ras-related protein RABA5b OS=Arabidopsis thaliana OX=3702 GN=RABA5B PE=1 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.7e-88
Identity = 166/214 (77.57%), Postives = 191/214 (89.25%), Query Frame = 0


Query: 5   DDEGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNLHSKATIGVEFQTQVMDIDGKEVKA 64
           +D+ GEEYLFKIV+IGDSAVGKSNLLSR++R+EF+ +SKATIGVEFQTQ+++I+GKEVKA
Sbjct: 4   EDDRGEEYLFKIVLIGDSAVGKSNLLSRFSRDEFDTNSKATIGVEFQTQLVEIEGKEVKA 63

Query: 65  QIWDTAGQERFRAVTSAYYRGAVGALIVYDISRRSTFDSVGRWLDELKTHSETTVARMLV 124
           QIWDTAGQERFRAVTSAYYRGA GALIVYDI+R  TF+SV RWL EL TH +T VA+MLV
Sbjct: 64  QIWDTAGQERFRAVTSAYYRGAFGALIVYDITRGDTFESVKRWLQELNTHCDTAVAQMLV 123

Query: 125 GNKCDLDNIRDVSIEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLN 184
           GNKCDL++IR VS+EEG +LAE EGLFFMETSALD+TNV +AFEIVIREI+NNVSRK+LN
Sbjct: 124 GNKCDLEDIRAVSVEEGKALAEEEGLFFMETSALDATNVDKAFEIVIREIFNNVSRKLLN 183

Query: 185 SDTYKAELSVNRVSLVNN-GGSKQSESYLSCCPR 218
           SD YKAELSVNRVSLVNN  GS+ S    SCC R
Sbjct: 184 SDAYKAELSVNRVSLVNNQDGSESSWRNPSCCSR 217

[Close]

BLAST of CmaCh06G016220 vs. ExPASy Swiss-Prot
Match: Q9FGK5 (Ras-related protein RABA5a OS=Arabidopsis thaliana OX=3702 GN=RABA5A PE=1 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.0e-71
Identity = 138/200 (69.00%), Postives = 169/200 (84.50%), Query Frame = 0


Query: 4   SDDEGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNLHSKATIGVEFQTQVMDIDGKEVK 63
           S+D+  E+YLFKIV+IGDSAVGKSNLL+R+AR+EF  +SK+TIGVEFQTQ MDI+GKE+K
Sbjct: 5   SEDDKSEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEIK 64

Query: 64  AQIWDTAGQERFRAVTSAYYRGAVGALIVYDISRRSTFDSVGRWLDELKTHSETTVARML 123
           AQIWDTAGQERFRAVTSAYYRGAVGAL+VYDISRR TF S+GRWL+EL THS+  V  +L
Sbjct: 65  AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFHSIGRWLNELHTHSDMNVVTIL 124

Query: 124 VGNKCDLDNIRDVSIEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVL 183
           VGNK DL ++R+VS  EG +LAEA+GLFFMETSALDS+NV  AFE V++EIYN +SRKV+
Sbjct: 125 VGNKSDLKDLREVSTAEGKALAEAQGLFFMETSALDSSNVAAAFETVVKEIYNILSRKVM 184

Query: 184 NSDTYKAELSVNRVSLVNNG 204
           +S     EL+    + ++NG
Sbjct: 185 SSQ----ELNKQDPASLSNG 200

[Close]

BLAST of CmaCh06G016220 vs. TAIR 10
Match: AT2G31680.1 (RAB GTPase homolog A5D )

HSP 1 Score: 351.3 bits (900), Expect = 5.6e-97
Identity = 179/215 (83.26%), Postives = 196/215 (91.16%), Query Frame = 0


Query: 3   SSDDEGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNLHSKATIGVEFQTQVMDIDGKEV 62
           SSDDEGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFN HSKATIGVEFQTQ M+I+GKEV
Sbjct: 2   SSDDEGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNAHSKATIGVEFQTQNMEIEGKEV 61

Query: 63  KAQIWDTAGQERFRAVTSAYYRGAVGALIVYDISRRSTFDSVGRWLDELKTHSETTVARM 122
           KAQIWDTAGQERFRAVTSAYYRGAVGAL+VYDISRRSTF+SVGRWLDELKTHS+TTVARM
Sbjct: 62  KAQIWDTAGQERFRAVTSAYYRGAVGALVVYDISRRSTFESVGRWLDELKTHSDTTVARM 121

Query: 123 LVGNKCDLDNIRDVSIEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKV 182
           LVGNKCDL++IR VS+EEG +LAE EGLFFMETSALDSTNVK AFE+VIR+IY N+SRK 
Sbjct: 122 LVGNKCDLESIRAVSVEEGKALAETEGLFFMETSALDSTNVKTAFEMVIRDIYTNISRKQ 181

Query: 183 LNSDTYKAELSV-NRVSLVNNGGSKQSESY-LSCC 216
           LNSDTYK ELS+ NRVSLV +     ++ +  SCC
Sbjct: 182 LNSDTYKTELSMKNRVSLVKDDNKSSTQGFGFSCC 216

[Close]

BLAST of CmaCh06G016220 vs. TAIR 10
Match: AT1G05810.1 (RAB GTPase homolog A5E )

HSP 1 Score: 345.9 bits (886), Expect = 2.4e-95
Identity = 178/215 (82.79%), Postives = 197/215 (91.63%), Query Frame = 0


Query: 3   SSDDEGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNLHSKATIGVEFQTQVMDIDGKEV 62
           SSDDEG EEYLFKIV+IGDSAVGKSNLLSRYARNEF+ +SKATIGVEFQTQ M+I+GKEV
Sbjct: 45  SSDDEGREEYLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEV 104

Query: 63  KAQIWDTAGQERFRAVTSAYYRGAVGALIVYDISRRSTFDSVGRWLDELKTHSETTVARM 122
           KAQIWDTAGQERFRAVTSAYYRGAVGAL+VYDI+RR+TF+SVGRWLDELK HS+TTVARM
Sbjct: 105 KAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARM 164

Query: 123 LVGNKCDLDNIRDVSIEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKV 182
           LVGNKCDL+NIR VS+EEG +LAE EGLFF+ETSALDSTNVK AFE+VI +IYNNVSRK 
Sbjct: 165 LVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVSRKQ 224

Query: 183 LNSDTYKAELSVNRVSLV--NNGGSKQSESYLSCC 216
           LNSDTYK EL+VNRVSLV  +N  SKQS  + SCC
Sbjct: 225 LNSDTYKDELTVNRVSLVKDDNSASKQSSGF-SCC 258

[Close]

BLAST of CmaCh06G016220 vs. TAIR 10
Match: AT2G43130.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 340.5 bits (872), Expect = 9.9e-94
Identity = 173/215 (80.47%), Postives = 192/215 (89.30%), Query Frame = 0


Query: 3   SSDDEGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNLHSKATIGVEFQTQVMDIDGKEV 62
           S DDE GEEYLFKIVIIGDSAVGKSNLL+RYARNEFN +SKATIGVEFQTQ M IDGKEV
Sbjct: 2   SDDDERGEEYLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEV 61

Query: 63  KAQIWDTAGQERFRAVTSAYYRGAVGALIVYDISRRSTFDSVGRWLDELKTHSETTVARM 122
           KAQIWDTAGQERFRAVTSAYYRGAVGAL+VYDI+R STF++VGRWLDEL THS+TTVA+M
Sbjct: 62  KAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKM 121

Query: 123 LVGNKCDLDNIRDVSIEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKV 182
           L+GNKCDL++IR VS+EEG SLAE+EGLFFMETSALDSTNVK AFE+VIREIY+N+SRK 
Sbjct: 122 LIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQ 181

Query: 183 LNSDTYKAELSVNRVSLVNNGGSKQSESYLSCCPR 218
           LNSD+YK EL+VNRVSLV N    +     SCC R
Sbjct: 182 LNSDSYKEELTVNRVSLVKN--ENEGTKTFSCCSR 214

[Close]

BLAST of CmaCh06G016220 vs. TAIR 10
Match: AT3G07410.1 (RAB GTPase homolog A5B )

HSP 1 Score: 326.2 bits (835), Expect = 1.9e-89
Identity = 166/214 (77.57%), Postives = 191/214 (89.25%), Query Frame = 0


Query: 5   DDEGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNLHSKATIGVEFQTQVMDIDGKEVKA 64
           +D+ GEEYLFKIV+IGDSAVGKSNLLSR++R+EF+ +SKATIGVEFQTQ+++I+GKEVKA
Sbjct: 4   EDDRGEEYLFKIVLIGDSAVGKSNLLSRFSRDEFDTNSKATIGVEFQTQLVEIEGKEVKA 63

Query: 65  QIWDTAGQERFRAVTSAYYRGAVGALIVYDISRRSTFDSVGRWLDELKTHSETTVARMLV 124
           QIWDTAGQERFRAVTSAYYRGA GALIVYDI+R  TF+SV RWL EL TH +T VA+MLV
Sbjct: 64  QIWDTAGQERFRAVTSAYYRGAFGALIVYDITRGDTFESVKRWLQELNTHCDTAVAQMLV 123

Query: 125 GNKCDLDNIRDVSIEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVLN 184
           GNKCDL++IR VS+EEG +LAE EGLFFMETSALD+TNV +AFEIVIREI+NNVSRK+LN
Sbjct: 124 GNKCDLEDIRAVSVEEGKALAEEEGLFFMETSALDATNVDKAFEIVIREIFNNVSRKLLN 183

Query: 185 SDTYKAELSVNRVSLVNN-GGSKQSESYLSCCPR 218
           SD YKAELSVNRVSLVNN  GS+ S    SCC R
Sbjct: 184 SDAYKAELSVNRVSLVNNQDGSESSWRNPSCCSR 217

[Close]

BLAST of CmaCh06G016220 vs. TAIR 10
Match: AT5G47520.1 (RAB GTPase homolog A5A )

HSP 1 Score: 271.2 bits (692), Expect = 7.4e-73
Identity = 138/200 (69.00%), Postives = 169/200 (84.50%), Query Frame = 0


Query: 4   SDDEGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNLHSKATIGVEFQTQVMDIDGKEVK 63
           S+D+  E+YLFKIV+IGDSAVGKSNLL+R+AR+EF  +SK+TIGVEFQTQ MDI+GKE+K
Sbjct: 5   SEDDKSEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEIK 64

Query: 64  AQIWDTAGQERFRAVTSAYYRGAVGALIVYDISRRSTFDSVGRWLDELKTHSETTVARML 123
           AQIWDTAGQERFRAVTSAYYRGAVGAL+VYDISRR TF S+GRWL+EL THS+  V  +L
Sbjct: 65  AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFHSIGRWLNELHTHSDMNVVTIL 124

Query: 124 VGNKCDLDNIRDVSIEEGTSLAEAEGLFFMETSALDSTNVKRAFEIVIREIYNNVSRKVL 183
           VGNK DL ++R+VS  EG +LAEA+GLFFMETSALDS+NV  AFE V++EIYN +SRKV+
Sbjct: 125 VGNKSDLKDLREVSTAEGKALAEAQGLFFMETSALDSSNVAAAFETVVKEIYNILSRKVM 184

Query: 184 NSDTYKAELSVNRVSLVNNG 204
           +S     EL+    + ++NG
Sbjct: 185 SSQ----ELNKQDPASLSNG 200

The following BLAST results are available for this feature:

BLAST of CmaCh06G016220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SIP0	7.9e-96	83.26	Ras-related protein RABA5d OS=Arabidopsis thaliana OX=3702 GN=RABA5D PE=1 SV=1	[more]
P19892	3.3e-94	82.79	Ras-related protein RABA5e OS=Arabidopsis thaliana OX=3702 GN=RABA5E PE=2 SV=1	[more]
P28187	1.4e-92	80.47	Ras-related protein RABA5c OS=Arabidopsis thaliana OX=3702 GN=RABA5C PE=1 SV=1	[more]
Q9SRS5	2.7e-88	77.57	Ras-related protein RABA5b OS=Arabidopsis thaliana OX=3702 GN=RABA5B PE=1 SV=1	[more]
Q9FGK5	1.0e-71	69.00	Ras-related protein RABA5a OS=Arabidopsis thaliana OX=3702 GN=RABA5A PE=1 SV=1	[more]

BLAST of CmaCh06G016220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31680.1	5.6e-97	83.26	RAB GTPase homolog A5D	[more]
AT1G05810.1	2.4e-95	82.79	RAB GTPase homolog A5E	[more]
AT2G43130.1	9.9e-94	80.47	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT3G07410.1	1.9e-89	77.57	RAB GTPase homolog A5B	[more]
AT5G47520.1	7.4e-73	69.00	RAB GTPase homolog A5A	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 14..35 score: 50.36 coord: 117..130 score: 50.82 coord: 55..77 score: 53.91 coord: 152..174 score: 41.95 coord: 37..53 score: 33.77
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 14..177 e-value: 8.6E-103 score: 357.5
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 19..217 e-value: 8.5E-5 score: 19.2
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 11..177 e-value: 2.3E-25 score: 100.3
None	No IPR available	PANTHER	PTHR47979	DRAB11-RELATED	coord: 1..216
None	No IPR available	PANTHER	PTHR47979:SF30	RAS-RELATED PROTEIN RABA5C	coord: 1..216
None	No IPR available	PROSITE	PS51419	RAB	coord: 9..215 score: 33.627029
None	No IPR available	PROSITE	PS51420	RHO	coord: 7..183 score: 10.224237
None	No IPR available	CDD	cd01868	Rab11_like	coord: 11..175 e-value: 4.20513E-107 score: 303.327
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 16..177 e-value: 5.4E-13 score: 46.4
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 15..175 e-value: 2.5E-59 score: 199.5
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 2..200 score: 15.381776
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 12..170 e-value: 3.6E-36 score: 122.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 6..207 e-value: 1.2E-66 score: 225.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 11..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G016220.1	CmaCh06G016220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0012505	endomembrane system
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding