CmaCh06G008360 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G008360
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr06: 4592621 .. 4592821 (-)
RNA-Seq Expression	CmaCh06G008360
Synteny	CmaCh06G008360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGTCTTCGCATCCAGCAACTTGGTGTGTGCAACTGTCTGTCTCTTGGTTGCAGAAAAGCTTGCCATTTCTTGGTCAGTATGATTATTCTATCCACTGCCATTGTTGGTAACAAACATGTGACTTGGCAATCTATTAGTACTCGAGAGTGGACGAAAGGACGGTCAGCAAAACAAGGGAGGCACATCCAGGGCTGA

mRNA sequence

ATGGGTAGTCTTCGCATCCAGCAACTTGGTGTGTGCAACTGTCTGTCTCTTGGTTGCAGAAAAGCTTGCCATTTCTTGGTCAGTATGATTATTCTATCCACTGCCATTGTTGGTAACAAACATGTGACTTGGCAATCTATTAGTACTCGAGAGTGGACGAAAGGACGGTCAGCAAAACAAGGGAGGCACATCCAGGGCTGA

Coding sequence (CDS)

ATGGGTAGTCTTCGCATCCAGCAACTTGGTGTGTGCAACTGTCTGTCTCTTGGTTGCAGAAAAGCTTGCCATTTCTTGGTCAGTATGATTATTCTATCCACTGCCATTGTTGGTAACAAACATGTGACTTGGCAATCTATTAGTACTCGAGAGTGGACGAAAGGACGGTCAGCAAAACAAGGGAGGCACATCCAGGGCTGA

Protein sequence

MGSLRIQQLGVCNCLSLGCRKACHFLVSMIILSTAIVGNKHVTWQSISTREWTKGRSAKQGRHIQG

Homology

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BLAST of CmaCh06G008360 vs. NCBI nr
Match: KAG6596910.1 (hypothetical protein SDJN03_10090, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.9 bits (172), Expect = 4.8e-09
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 29 MIILSTAIVGNKHVTWQSISTREWTK--GRSAKQGRHIQG 67
          MIILSTAIVGNKHV WQSISTREW+K  GRSAKQGRHIQG
Sbjct: 1  MIILSTAIVGNKHVIWQSISTREWSKDGGRSAKQGRHIQG 40

The following BLAST results are available for this feature:

BLAST of CmaCh06G008360 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G008360 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G008360 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596910.1	4.8e-09	90.00	hypothetical protein SDJN03_10090, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh06G008360 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..19 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G008360.1	CmaCh06G008360.1	mRNA