CmaCh06G005660 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G005660
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Mediator of RNA polymerase II transcription subunit 7
Location	Cma_Chr06: 2727843 .. 2730203 (+)
RNA-Seq Expression	CmaCh06G005660
Synteny	CmaCh06G005660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCAGTTGATTCCAATTCTCATTCTGTCGATCGTTAGATTTTTCCAATAACAATGGCGACAGCTACGTATCCGCCACCGCCACCGTATTACAGGCTCTACAAAGATTACTCCCAGAATCCGAAATCGGCACCGGAGCCTCCTCCGCTGATCGAAGGGACCTACGTGTGCTTTGGTAGCAACTACACTGTAAGATTTACTCTCGATTCCTTCTTCATCTCTCTGAATGCATCTTGAAATGTCATTTATATGTGAAGATTCGATTTCGACTCGCATTTTTGTTGAATTCTTTTAGCTGTTGGAGTCTGGTTTAACTTTTCATTTTTAAATAGATAAGATTTTTTAAGAACGTATGCTAAGAATGGTTTTAGGGTTTTTAGTTCCGAGGTTGTTCGTCTCTGCTTCCGAAATCTTTCATAATCTCCGTTCAGTGTGGACATTTTCGAGTTAGATTCTTTATTTGATTTGATCGAACTTATAGTTTAAACAGTGTCATGATAATCACTGTGATTTTGTTCCTTTTTCCTGATTGTTTCGTTTTGATTTTAGACCGATGACGTGCTTCCAAGCTTGGAAGAGCAAGGAGTGCGCCAGCTTTACCCTAGAGGACCAAATGTTGGTAAGTAGATTTAGTTTAGTTACCAGTGTTCCCAAATTTGGGTCAGAATTTGTTCTCCATCAGTTGTTTTTCTATTTGATAAAGAATCGCTATTATCCTCTCAAGTAAGGCAAATTTTATGCTCAAGTAATTATTCGTTTGATTTCTTAGATCTGTGGTGGTCTCTGTTTTCGTTCGGGGTAAGAATAATGCATGTCTGGGTAGCCTCCAAGGGGCAGCACCGTGGCCAAGGCTCACGGTCTCTGAGTACACTTACTCAAAGTCACATGTTTGAATCTCTGGGGTAGATTTTTAAGGAAAACTCTGATGTCTTCAGAGTTTGGGCCTTGGGGCTGGCGTGGATGCCAAAGGGAAGTGGGGTTTTATAATCCATCCCCAAGACATAAAGGCTGAGGAGAATTTCTGGAAACCCAACAATTGGCCGAGGCCAAAGGCAAAGAATAGGTAAAAAAAGATTTGATGAAATTACACACACATGAAACGAGCTAACCCCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTGACACTGACATGTGTTCACTCGCACGTGCCCATGTAGATCTCTTCCTGTCGAAAGAAATGAGATTTTCGAGAAAAGAAGTCAAACCTAGTTTAAATATTTCAACTAAGCTCTGAGCACAAGTGTCATTGCTTTAAAGTTCTGTTAAAAAAAGAATATAAGTGTGATTGCTTCAAGTCTTGAGAGTCATTTGACATGTTAGCGTTACCAGTATATACAATGAAGATGTTTGGGAGATTCCTATTTCTATTGTCGTGGAAGTAACGAATTAAATTCCTGTTCGTGAAAATATTTGAAACTTAATTTAAAGACATGAAAATGTGTAGTGGTAGTGGCTGTCATGTTCTTAATATATTCCTCCTGTACGGTGTAAACAAAAAGAGTCTCTCTACCTGCCACTTGCTCGATGAACTTGATTTTTGATTGCTTGGAGCAACAATCTCCCCTGCAGCCCTCCCTCCCAAGTAAAGTCTTTTACCTGACATTATTATTGGTGGTTCTTCCTCAGATTTTAAGAAGGAATTGAGATCTCTCAATAGGGAACTTCAGCTTCACATCCTGGAGCTCGCCGATATTCTTGTTGAGAGGCCATCACAATACGCAAGGAGGGTAGAAGAAATATCCCTAATATTCAAAAACTTACACCACCTGCTTAATTCATTGCGTCCGCATCAGGTGGTTTAGTTTTACACATTTAAACTGGACATATTGTATTGTCAAAATTATCTAATTGTCAGGTCTATCTTCCCTTGTAGGCTAGAGCTACACTGATTCATATACTAGAACTTCAGATAGAGCGTCGGAGACAAGCTGTCGAGGATATAAAAAGGTATGTTGGTTCTGATCGAATATATTCATGTATGAATGTGTAATAACTTGTGCAATCAGCTACCCTTTCGTCACACGCCTTTTTTGGATTGAATGTCGTACTTTCTCGGGTAAATATTATTAAACCCAAAACTTAGGATTTCTTGTCCCTTTATCCATAATCATTGTTTTGTTCTATCTTATTCTTGGTGGTTGAGACAAGGATGTGTTCTTATAAAATTTTGAGCCCATAATTCATCGTTCAAGGCTTGTTTCTGTTCTGGCTGATAACTTCTGCATCATCTCACTGATTATTTGCTAATAGTACCACCATTGATATAATTTTCTTGTCTAGGAGGAGAGAAGAAGCTCAAAGATTACTCATGGAGTCCCTTGAAACTTTGGATGGACACTAG

mRNA sequence

GCCAGTTGATTCCAATTCTCATTCTGTCGATCGTTAGATTTTTCCAATAACAATGGCGACAGCTACGTATCCGCCACCGCCACCGTATTACAGGCTCTACAAAGATTACTCCCAGAATCCGAAATCGGCACCGGAGCCTCCTCCGCTGATCGAAGGGACCTACGTGTGCTTTGGTAGCAACTACACTACCGATGACGTGCTTCCAAGCTTGGAAGAGCAAGGAGTGCGCCAGCTTTACCCTAGAGGACCAAATGTTGATTTTAAGAAGGAATTGAGATCTCTCAATAGGGAACTTCAGCTTCACATCCTGGAGCTCGCCGATATTCTTGTTGAGAGGCCATCACAATACGCAAGGAGGGTAGAAGAAATATCCCTAATATTCAAAAACTTACACCACCTGCTTAATTCATTGCGTCCGCATCAGGCTAGAGCTACACTGATTCATATACTAGAACTTCAGATAGAGCGTCGGAGACAAGCTGTCGAGGATATAAAAAGGAGGAGAGAAGAAGCTCAAAGATTACTCATGGAGTCCCTTGAAACTTTGGATGGACACTAG

Coding sequence (CDS)

ATGGCGACAGCTACGTATCCGCCACCGCCACCGTATTACAGGCTCTACAAAGATTACTCCCAGAATCCGAAATCGGCACCGGAGCCTCCTCCGCTGATCGAAGGGACCTACGTGTGCTTTGGTAGCAACTACACTACCGATGACGTGCTTCCAAGCTTGGAAGAGCAAGGAGTGCGCCAGCTTTACCCTAGAGGACCAAATGTTGATTTTAAGAAGGAATTGAGATCTCTCAATAGGGAACTTCAGCTTCACATCCTGGAGCTCGCCGATATTCTTGTTGAGAGGCCATCACAATACGCAAGGAGGGTAGAAGAAATATCCCTAATATTCAAAAACTTACACCACCTGCTTAATTCATTGCGTCCGCATCAGGCTAGAGCTACACTGATTCATATACTAGAACTTCAGATAGAGCGTCGGAGACAAGCTGTCGAGGATATAAAAAGGAGGAGAGAAGAAGCTCAAAGATTACTCATGGAGTCCCTTGAAACTTTGGATGGACACTAG

Protein sequence

MATATYPPPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQLYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSLRPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH

Homology

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BLAST of CmaCh06G005660 vs. ExPASy Swiss-Prot
Match: Q9LYW3 (Mediator of RNA polymerase II transcription subunit 7a OS=Arabidopsis thaliana OX=3702 GN=MED7A PE=1 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 5.4e-76
Identity = 140/167 (83.83%), Postives = 155/167 (92.81%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKDYS+NP SAPEPPP IEGTYVCFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDYSENPNSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+K ELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKNELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQRLL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQRLLKDAYLTLDG 167

[Close]

BLAST of CmaCh06G005660 vs. ExPASy Swiss-Prot
Match: Q9LZD7 (Mediator of RNA polymerase II transcription subunit 7b OS=Arabidopsis thaliana OX=3702 GN=MED7B PE=1 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.7e-74
Identity = 138/167 (82.63%), Postives = 154/167 (92.22%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKD+S+N  SAPEPPP IEGTYVCFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+KKELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQ LL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDG 167

[Close]

BLAST of CmaCh06G005660 vs. ExPASy Swiss-Prot
Match: Q55DQ5 (Putative mediator of RNA polymerase II transcription subunit 7 OS=Dictyostelium discoideum OX=44689 GN=med7 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.4e-28
Identity = 66/150 (44.00%), Postives = 96/150 (64.00%), Query Frame = 0


Query: 17  KDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQLYPRGPNVDFKKELRS 76
           K    N   AP  PP +   YV FG  Y+T D+LPSL+E G +QLYP+G +++   EL+ 
Sbjct: 134 KKIELNKPLAPPLPPKVGANYVQFGQTYSTVDMLPSLDESGAKQLYPKG-DIEPISELKK 193

Query: 77  LNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSLRPHQARATLIHILELQ 136
           LNR +  + L+L + L+E P  Y  ++E+ISL+F N HHLLNS RPHQAR TL+ I+  Q
Sbjct: 194 LNRSILFNYLQLLETLIENPKNYQSKIEDISLLFINFHHLLNSYRPHQARETLLSIMNEQ 253

Query: 137 IERRRQAVEDIKRRREEAQRLLMESLETLD 167
           I+++ Q+ E IK+  +  +  LM S + L+
Sbjct: 254 IKQKNQSNESIKKALDICKESLMNSFKNLN 282

[Close]

BLAST of CmaCh06G005660 vs. ExPASy Swiss-Prot
Match: Q17MI0 (Mediator of RNA polymerase II transcription subunit 7 OS=Aedes aegypti OX=7159 GN=MED7 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.7e-26
Identity = 63/161 (39.13%), Postives = 103/161 (63.98%), Query Frame = 0


Query: 8   PPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDD-VLPSLEEQGVRQLYPRGP 67
           PP  YY+LY D +     AP+PP  I+GTY  FG  ++T+D ++  LE QG ++LYP+  
Sbjct: 15  PPAQYYKLYTDENVRNNRAPKPPAPIQGTYQMFGQQFSTEDNIIRPLEAQGFKRLYPQ-- 74

Query: 68  NVDFKKELRSLNRELQLHILELADILVERPS--QYARRVEEISLIFKNLHHLLNSLRPHQ 127
           + D +KEL+ LN  L ++ L+L D+LV  P   Q A ++E+++L+F ++HHLLN  RPHQ
Sbjct: 75  HFDRRKELKKLNHSLLVNFLDLIDLLVHNPDSPQRAEKIEDLNLLFVHIHHLLNEFRPHQ 134

Query: 128 ARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETL 166
           AR TL  ++ELQ  +R++  +  +   E+ + ++  +  +L
Sbjct: 135 ARETLRVMMELQKRQRQETTQRFQNHLEKVREMVNNAFASL 173

[Close]

BLAST of CmaCh06G005660 vs. ExPASy Swiss-Prot
Match: Q3T123 (Mediator of RNA polymerase II transcription subunit 7 OS=Bos taurus OX=9913 GN=MED7 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 9.0e-23
Identity = 61/166 (36.75%), Postives = 98/166 (59.04%), Query Frame = 0


Query: 3   TATYPPPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDD-VLPSLEEQGVRQL 62
           +A  PPP  Y + Y D +     AP+PPP I+ +Y+ FG+ +  DD ++  LE QG+ +L
Sbjct: 8   SALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPLESQGIERL 67

Query: 63  YPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYAR--RVEEISLIFKNLHHLLNS 122
           +P     D KKELR LN  + ++ L+L DIL+  P    R  ++E++ L+F ++HHL+N 
Sbjct: 68  HPM--QFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVHHLINE 127

Query: 123 LRPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETL 166
            RPHQAR TL  ++E+Q  +R +  E  ++  E    ++   L +L
Sbjct: 128 YRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASL 171

[Close]

BLAST of CmaCh06G005660 vs. ExPASy TrEMBL
Match: A0A6J1KUF9 (Mediator of RNA polymerase II transcription subunit 7 OS=Cucurbita maxima OX=3661 GN=LOC111498770 PE=3 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 6.4e-88
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of CmaCh06G005660 vs. ExPASy TrEMBL
Match: A0A6J1FG49 (Mediator of RNA polymerase II transcription subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111443847 PE=3 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 4.1e-87
Identity = 167/168 (99.40%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKDYSQNPKSAPEPPP IEGTYVCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of CmaCh06G005660 vs. ExPASy TrEMBL
Match: A0A6J1DBY3 (Mediator of RNA polymerase II transcription subunit 7 OS=Momordica charantia OX=3673 GN=LOC111019312 PE=3 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.1e-84
Identity = 162/168 (96.43%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+YRLYKDY QNPKSAPEPPP IEGTY CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYACFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQI+RRRQAVEDIKRRREEAQRL MESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRLFMESLETLDGH 168

[Close]

BLAST of CmaCh06G005660 vs. ExPASy TrEMBL
Match: A0A5A7TKB8 (Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005090 PE=3 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 2.5e-84
Identity = 161/168 (95.83%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+Y+LYKDY Q+PKSAPEPPP IEGTY+CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVD+KKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of CmaCh06G005660 vs. ExPASy TrEMBL
Match: A0A0A0LBQ7 (Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis sativus OX=3659 GN=Csa_3G791540 PE=3 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 2.5e-84
Identity = 161/168 (95.83%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+Y+LYKDY Q+PKSAPEPPP IEGTY+CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVD+KKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of CmaCh06G005660 vs. NCBI nr
Match: XP_023005907.1 (mediator of RNA polymerase II transcription subunit 7a [Cucurbita maxima])

HSP 1 Score: 333.2 bits (853), Expect = 1.3e-87
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of CmaCh06G005660 vs. NCBI nr
Match: XP_022937468.1 (mediator of RNA polymerase II transcription subunit 7a [Cucurbita moschata] >KAG6596657.1 Mediator of RNA polymerase II transcription subunit 7b, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028195.1 Mediator of RNA polymerase II transcription subunit 7b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 330.5 bits (846), Expect = 8.5e-87
Identity = 167/168 (99.40%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKDYSQNPKSAPEPPP IEGTYVCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of CmaCh06G005660 vs. NCBI nr
Match: XP_023539102.1 (mediator of RNA polymerase II transcription subunit 7a [Cucurbita pepo subsp. pepo])

HSP 1 Score: 328.2 bits (840), Expect = 4.2e-86
Identity = 166/168 (98.81%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKDYSQNPKSAPEPPP IEGTYVCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELR LNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRFLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of CmaCh06G005660 vs. NCBI nr
Match: XP_022151348.1 (mediator of RNA polymerase II transcription subunit 7a-like [Momordica charantia])

HSP 1 Score: 322.4 bits (825), Expect = 2.3e-84
Identity = 162/168 (96.43%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+YRLYKDY QNPKSAPEPPP IEGTY CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYACFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQI+RRRQAVEDIKRRREEAQRL MESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRLFMESLETLDGH 168

[Close]

BLAST of CmaCh06G005660 vs. NCBI nr
Match: XP_008443001.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis melo] >KAA0043764.1 mediator of RNA polymerase II transcription subunit 7a [Cucumis melo var. makuwa] >TYK25369.1 mediator of RNA polymerase II transcription subunit 7a [Cucumis melo var. makuwa])

HSP 1 Score: 321.2 bits (822), Expect = 5.2e-84
Identity = 161/168 (95.83%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+Y+LYKDY Q+PKSAPEPPP IEGTY+CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVD+KKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of CmaCh06G005660 vs. TAIR 10
Match: AT5G03220.1 (Mediator complex, subunit Med7 )

HSP 1 Score: 285.0 bits (728), Expect = 3.8e-77
Identity = 140/167 (83.83%), Postives = 155/167 (92.81%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKDYS+NP SAPEPPP IEGTYVCFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDYSENPNSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+K ELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKNELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQRLL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQRLLKDAYLTLDG 167

[Close]

BLAST of CmaCh06G005660 vs. TAIR 10
Match: AT5G03500.1 (Mediator complex, subunit Med7 )

HSP 1 Score: 280.0 bits (715), Expect = 1.2e-75
Identity = 138/167 (82.63%), Postives = 154/167 (92.22%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKD+S+N  SAPEPPP IEGTYVCFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+KKELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQ LL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDG 167

[Close]

BLAST of CmaCh06G005660 vs. TAIR 10
Match: AT5G03500.2 (Mediator complex, subunit Med7 )

HSP 1 Score: 280.0 bits (715), Expect = 1.2e-75
Identity = 138/167 (82.63%), Postives = 154/167 (92.22%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKD+S+N  SAPEPPP IEGTYVCFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+KKELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQ LL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDG 167

[Close]

BLAST of CmaCh06G005660 vs. TAIR 10
Match: AT5G03500.3 (Mediator complex, subunit Med7 )

HSP 1 Score: 280.0 bits (715), Expect = 1.2e-75
Identity = 138/167 (82.63%), Postives = 154/167 (92.22%), Query Frame = 0


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKD+S+N  SAPEPPP IEGTYVCFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+KKELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQ LL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDG 167

The following BLAST results are available for this feature:

BLAST of CmaCh06G005660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYW3	5.4e-76	83.83	Mediator of RNA polymerase II transcription subunit 7a OS=Arabidopsis thaliana O...	[more]
Q9LZD7	1.7e-74	82.63	Mediator of RNA polymerase II transcription subunit 7b OS=Arabidopsis thaliana O...	[more]
Q55DQ5	1.4e-28	44.00	Putative mediator of RNA polymerase II transcription subunit 7 OS=Dictyostelium ...	[more]
Q17MI0	6.7e-26	39.13	Mediator of RNA polymerase II transcription subunit 7 OS=Aedes aegypti OX=7159 G...	[more]
Q3T123	9.0e-23	36.75	Mediator of RNA polymerase II transcription subunit 7 OS=Bos taurus OX=9913 GN=M...	[more]

BLAST of CmaCh06G005660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KUF9	6.4e-88	100.00	Mediator of RNA polymerase II transcription subunit 7 OS=Cucurbita maxima OX=366...	[more]
A0A6J1FG49	4.1e-87	99.40	Mediator of RNA polymerase II transcription subunit 7 OS=Cucurbita moschata OX=3...	[more]
A0A6J1DBY3	1.1e-84	96.43	Mediator of RNA polymerase II transcription subunit 7 OS=Momordica charantia OX=...	[more]
A0A5A7TKB8	2.5e-84	95.83	Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis melo var. makuw...	[more]
A0A0A0LBQ7	2.5e-84	95.83	Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis sativus OX=3659...	[more]

BLAST of CmaCh06G005660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023005907.1	1.3e-87	100.00	mediator of RNA polymerase II transcription subunit 7a [Cucurbita maxima]	[more]
XP_022937468.1	8.5e-87	99.40	mediator of RNA polymerase II transcription subunit 7a [Cucurbita moschata] >KAG...	[more]
XP_023539102.1	4.2e-86	98.81	mediator of RNA polymerase II transcription subunit 7a [Cucurbita pepo subsp. pe...	[more]
XP_022151348.1	2.3e-84	96.43	mediator of RNA polymerase II transcription subunit 7a-like [Momordica charantia...	[more]
XP_008443001.1	5.2e-84	95.83	PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis ...	[more]

BLAST of CmaCh06G005660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03220.1	3.8e-77	83.83	Mediator complex, subunit Med7	[more]
AT5G03500.1	1.2e-75	82.63	Mediator complex, subunit Med7	[more]
AT5G03500.2	1.2e-75	82.63	Mediator complex, subunit Med7	[more]
AT5G03500.3	1.2e-75	82.63	Mediator complex, subunit Med7	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 67..87
None	No IPR available	COILS	Coil	Coil	coord: 130..164
None	No IPR available	PANTHER	PTHR21428	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7	coord: 2..168
IPR009244	Mediator complex, subunit Med7	PFAM	PF05983	Med7	coord: 4..157 e-value: 3.4E-44 score: 151.3
IPR044888	Mediator complex, subunit Med7 superfmaily	GENE3D	6.10.140.200		coord: 64..159 e-value: 6.3E-29 score: 101.8
IPR037212	Mediator complex, subunit Med7/Med21-like	SUPERFAMILY	140718	Mediator hinge subcomplex-like	coord: 66..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G005660.1	CmaCh06G005660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0070847	core mediator complex
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity