CmaCh06G001900 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G001900
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr06: 971049 .. 972517 (+)
RNA-Seq Expression	CmaCh06G001900
Synteny	CmaCh06G001900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTGCTTATTCCTTTTCCCCTTAGCCACTACCGAGCGGGAACTGAAACGCGTGCGCCGTGCGGTGCGCAGCCACCGGCCCTGCCGGGTGTCAGCCACTGGCGGAATCAGCCTCCCGACGCGATTGTTCAATAGTTGGCCTCTCTCTTTCAGCGCGGTTGGTGTCCTCCCATCTCCGCCGCTGGATCCATCAACCCAATCAGCCTACGTCACAACCAATCAAATCAACGGCCCTCAAGGCCTCCGACTCCCACTGGAAATCTGGACCATTTTGGGGTTCCGTTATATGGCAGGCACAAGCGTAGTAAAGTGCAAAAGAGGAGGGTACTTCGGTCATTTCATCCTCTGAAACCGTAGTGCATGCGAAATATGCGATTGGATTAAAAATGGTATGGCGCATTATACGGAACTGTCTTTTTGGCGCAGTATTGTCATTTAGATAATCCGCTTTAACCTAACCCACTCGCCCTTGTCGAGCGTGTGTCCTATTCGCTGCTGAGCTAATTTCCGTCATTTCACTCTAATCACGCTGACCTATCAATGATCACTCAAATGCTTCCTTTAGTAATTTTAATTTTAATAAACTCGCTTAATTTCAAATAATAAATAAATAAATATCTAATTTTAATTCATTTTAATACTTATAATTTTTAAAAAATTTAAATTCAAGCGAGTAGATTTTTAATAAACTTTAAAATCAATTTAGATCCGTCTGTCCCAGAGTTAAAGTTATCTAAGAAAGATATTGATACAGATGAATGTAATTGATAGATTTTGCATTATTTTACTTTAGAACTGGAGAATAATATTATTATTTTTGTATATAAATAAAAAATTATTATTATTTAATTTATTTTAATAAAATTAAGTATTAACGAACGGGTAATTAATTTATTTATTTATTTATTTTGTTAAAAGTGTATTAAAATTAAAATGAAAAATAATAATTAAATAGAAGAAAGGGTAAGTGGGGATGGCTGTGTCTTGAAGCATCATCGTGCATCAGTGCATGCATTTTGTGCTTCCCAACTTCTCCTCTTCATCCTCTCTCTCAATCTCTACTTTATTCCTCGGTTGCTTTGGGAGCACTCGTCTTCTCCGTTCAACTTTCCGATTCCGATCAGAGATCCAGCTCTAAGGTACCTGAAATCTTACTCTCTTCATGATTATCTCTTCTTTCCTCAATCTTCAAAGCTTCAGTCCTGCTCTATTTCCTCTGAATGTTTATATCCCATGCGCACCTATGTTTTTTTTATGGTAGTCGTGACTTTAGCAAATTTAGTTGCTGTTTGAGAGAGAGAACTAGCTATTATCTTAGCTCTGTTTCTCCTATGATTGTTAGTATGGTGCCCTGTTTGGTCGACTAATTTTGACTATGGATTGCTTGGCTGCTGGAGTTTATCTAATTTAATTAGGGCTCTCGTTTCCGCGTCATGAATTTTGGTCTTGTGAAATTTTTAGAATTGA

mRNA sequence

ATGTTTTGCTTATTCCTTTTCCCCTTAGCCACTACCGAGCGGGAACTGAAACGCGTGCGCCGTGCGGTGCGCAGCCACCGGCCCTGCCGGGTGTCAGCCACTGGCGGAATCAGCCTCCCGACGCGATTGTTCAATAGTTGGCCTCTCTCTTTCAGCGCGGTTGGTGTCCTCCCATCTCCGCCGCTGGATCCATCAACCCAATCAGCCTACGTCACAACCAATCAAATCAACGGCCCTCAAGGCCTCCGACTCCCACTGGAAATCTGGACCATTTTGGGGTTCCGTTATATGGCAGGCACAAGCGTAGTAAAGTGCAAAAGAGGAGGTGCATGCATTTTGTGCTTCCCAACTTCTCCTCTTCATCCTCTCTCTCAATCTCTACTTTATTCCTCGGTTGCTTTGGGAGCACTCGTCTTCTCCGTTCAACTTTCCGATTCCGATCAGAGATCCAGCTCTAAGAATTGA

Coding sequence (CDS)

ATGTTTTGCTTATTCCTTTTCCCCTTAGCCACTACCGAGCGGGAACTGAAACGCGTGCGCCGTGCGGTGCGCAGCCACCGGCCCTGCCGGGTGTCAGCCACTGGCGGAATCAGCCTCCCGACGCGATTGTTCAATAGTTGGCCTCTCTCTTTCAGCGCGGTTGGTGTCCTCCCATCTCCGCCGCTGGATCCATCAACCCAATCAGCCTACGTCACAACCAATCAAATCAACGGCCCTCAAGGCCTCCGACTCCCACTGGAAATCTGGACCATTTTGGGGTTCCGTTATATGGCAGGCACAAGCGTAGTAAAGTGCAAAAGAGGAGGTGCATGCATTTTGTGCTTCCCAACTTCTCCTCTTCATCCTCTCTCTCAATCTCTACTTTATTCCTCGGTTGCTTTGGGAGCACTCGTCTTCTCCGTTCAACTTTCCGATTCCGATCAGAGATCCAGCTCTAAGAATTGA

Protein sequence

MFCLFLFPLATTERELKRVRRAVRSHRPCRVSATGGISLPTRLFNSWPLSFSAVGVLPSPPLDPSTQSAYVTTNQINGPQGLRLPLEIWTILGFRYMAGTSVVKCKRGGACILCFPTSPLHPLSQSLLYSSVALGALVFSVQLSDSDQRSSSKN

Homology

[Close]

BLAST of CmaCh06G001900 vs. NCBI nr
Match: KAG6596306.1 (hypothetical protein SDJN03_09486, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.8 bits (268), Expect = 8.2e-20
Identity = 81/161 (50.31%), Postives = 93/161 (57.76%), Query Frame = 0


Query: 1   MFCLFLFPLATTERELKRVRR-AVRSHRPCRVSATG------GISLPTRLFNSWPLSFSA 60
           MFCLFLFPLATTERELK VRR      +P   SA+G      G+SL  RL +S    +  
Sbjct: 1   MFCLFLFPLATTERELKGVRRTGPAGCQPPAESASGRDCSLVGLSLSARLVSSHLRRWIH 60

Query: 61  VGVLPSPPLDPSTQSAYVTTNQINGPQGLRLPLEIWTILGFRYMAGTSVVKCKRGGACIL 120
               P+ P     +S  +  +  +   G       W           SV+   +  ACIL
Sbjct: 61  ---QPNQPTSHPIKSTALMASDSHWKSG-----PFW----------GSVMWQAQAYACIL 120

Query: 121 CFPTSPLHPLSQSLLYSSVALGALVFSVQLSDSDQRSSSKN 155
           CFPTS LHPLSQSLLYSSVALGALVFSVQLSDSDQRSSSKN
Sbjct: 121 CFPTS-LHPLSQSLLYSSVALGALVFSVQLSDSDQRSSSKN 142

The following BLAST results are available for this feature:

BLAST of CmaCh06G001900 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G001900 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G001900 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596306.1	8.2e-20	50.31	hypothetical protein SDJN03_09486, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh06G001900 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G001900.1	CmaCh06G001900.1	mRNA