CmaCh05G006640 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G006640
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RING-H2 finger protein ATL13-like
Location	Cma_Chr05: 3412502 .. 3414283 (+)
RNA-Seq Expression	CmaCh05G006640
Synteny	CmaCh05G006640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCTCTCTCTGAACCCATTTCTGCACTTCCTCCGCCGCCGCCACCGCCGGAGACCACATCGGACGGGGGTTTTCGTATAGACAAAGAAGTGAGTCCCACAATTCTCTTAGCCATAATCATCCTCGCCATAGTCTTCTTCTTCTCTAGCCTCCTCCATCTCCTTCTCCGATTATTTCTCAGGCCTCAAAACAGAACAGACCCGGAAGATATTGCCGTCGGCGACGGCGATACCTCCGCCTTCCAAGGCCAATTACGGCAGCTTTTCGATCTTCACGACGCTGGAGTGGACCAATCCTTCATCGACACCCTCCCTGTTTTTGTCTACAAAGCCATAATCGGTTTGAAATTAGACCCATTTGATTGCTCTGTTTGTCTCTGTGAATTTCAGCCAAACGATAAGCTCCGATTGTTGACCAAATGCAGCCATGCCTTTCATATGGACTGCATCGACACTTGGCTGTTGACACATTCCACTTGCCCTCTCTGCCGTGCAAGCTTGATTTCAGATTTCGCCGCCATTAATGGCGGATTCACGTCCCCACTTGTTGAGGTTCTTGAATCTGCAAGTAACAGCTCGAGAGAAATTGGGGACGTTCACACCGGTTCCTTTCTGGGTTTTCTTGGAAATTCCAATTTTGCTGAACTGAAACCAGAGGAACCTCCGGCAGAGGCGGCGGAGAAGGTGGTTCCGATTAAGTTGGGAAAATTCAAAAGCTTGGAGAGATATGGAGAAGGGAGTAGCAACAATGGCAATGTGGATTCAAGAAGATGTTTTTCAATGGGTTCATTTGGGTATGTAATGGACGAGAATTCGTCTCTGCAAGTTCCGATCAGGAAACGCGCGGCGAGGAAACAAGCGATAAAGAAGAAAAATCTGCCATTAACGCCGGGCACTCGAGCGGCGATGTCAGAATGCGATGGCGAATCGAGACGAGAGTTCAATTTCATGGAAACGAATCGGAGAGTCGAGAGTTTCCGCCATGGGAGCTCGAAGGAGAGCTTTGAAGCGAAGGTCGTCGGCGCCGGTGTCGGATTGCCGGTGACTGATTTAGCAAGAAGAGCATTTTCGTTTCATTTTCCGGCAAATTGGAACCGACCCAGATCGGAAAATTGGATGGGAACGATGGATGAAGAGAATCAAAGAAGAAATAGCTCGGAATTTATTGAGAATCAACCGTCGTTTGTGAGAAGAACATTACAGTGGCTGATGGGGAAGAACAACAATAGGATTGTTCATTCATGTTCTACACCCAACGATTATGATTCAAACTCATGATTTTCCATTTCTGTTGGTTGAATTTAGTTTTCTCCATTTTCTTGAGGAGTTTTGAGTGGAGAAATTAAATGTGTTCAGAATTGTTCATGGACGATGAATTTTTTAGTACCGAAAAGAACAAAAACATGACCATTTTTGGGCAATTTAGAAGCAAAATTCCATATATGTTGGGGAAGGGAGAGAATTTGGGGATATTTTGATAATTATTTCATAAATAAATTTTGGATTTTAAATTGTTTATGGAAATTGAAAGTTTGGTAACCTATATGAATGGAGAATCATAATTTTACCATAAAAGCAGCTACCTTATATTGATTGGATTATATTATTTTGAATAAATGAGATATAAGCTTTAAATTCTTAAGTTTGTTCCACTCAACTCAACATTTCAATACATTTCCATCTTTTTTAAGAGTTAGGTTGAGCTATGAGCACTGAAGAATTTTCATATTTGATTTTAAAGATTATCTAATTTTGTTGTTTATTTAAATTTAGAATTGA

mRNA sequence

ATGGCCGCTCTCTCTGAACCCATTTCTGCACTTCCTCCGCCGCCGCCACCGCCGGAGACCACATCGGACGGGGGTTTTCGTATAGACAAAGAAGTGAGTCCCACAATTCTCTTAGCCATAATCATCCTCGCCATAGTCTTCTTCTTCTCTAGCCTCCTCCATCTCCTTCTCCGATTATTTCTCAGGCCTCAAAACAGAACAGACCCGGAAGATATTGCCGTCGGCGACGGCGATACCTCCGCCTTCCAAGGCCAATTACGGCAGCTTTTCGATCTTCACGACGCTGGAGTGGACCAATCCTTCATCGACACCCTCCCTGTTTTTGTCTACAAAGCCATAATCGGTTTGAAATTAGACCCATTTGATTGCTCTGTTTGTCTCTGTGAATTTCAGCCAAACGATAAGCTCCGATTGTTGACCAAATGCAGCCATGCCTTTCATATGGACTGCATCGACACTTGGCTGTTGACACATTCCACTTGCCCTCTCTGCCGTGCAAGCTTGATTTCAGATTTCGCCGCCATTAATGGCGGATTCACGTCCCCACTTGTTGAGGTTCTTGAATCTGCAAGTAACAGCTCGAGAGAAATTGGGGACGTTCACACCGGTTCCTTTCTGGGTTTTCTTGGAAATTCCAATTTTGCTGAACTGAAACCAGAGGAACCTCCGGCAGAGGCGGCGGAGAAGGTGGTTCCGATTAAGTTGGGAAAATTCAAAAGCTTGGAGAGATATGGAGAAGGGAGTAGCAACAATGGCAATGTGGATTCAAGAAGATGTTTTTCAATGGGTTCATTTGGGTATGTAATGGACGAGAATTCGTCTCTGCAAGTTCCGATCAGGAAACGCGCGGCGAGGAAACAAGCGATAAAGAAGAAAAATCTGCCATTAACGCCGGGCACTCGAGCGGCGATGTCAGAATGCGATGGCGAATCGAGACGAGAGTTCAATTTCATGGAAACGAATCGGAGAGTCGAGAGTTTCCGCCATGGGAGCTCGAAGGAGAGCTTTGAAGCGAAGGTCGTCGGCGCCGGTGTCGGATTGCCGGTGACTGATTTAGCAAGAAGAGCATTTTCGTTTCATTTTCCGGCAAATTGGAACCGACCCAGATCGGAAAATTGGATGGGAACGATGGATGAAGAGAATCAAAGAAGAAATAGCTCGGAATTTATTGAGAATCAACCGTCGTTTGTGAGAAGAACATTACAGTGGCTGATGGGGAAGAACAACAATAGGATTAATTGA

Coding sequence (CDS)

ATGGCCGCTCTCTCTGAACCCATTTCTGCACTTCCTCCGCCGCCGCCACCGCCGGAGACCACATCGGACGGGGGTTTTCGTATAGACAAAGAAGTGAGTCCCACAATTCTCTTAGCCATAATCATCCTCGCCATAGTCTTCTTCTTCTCTAGCCTCCTCCATCTCCTTCTCCGATTATTTCTCAGGCCTCAAAACAGAACAGACCCGGAAGATATTGCCGTCGGCGACGGCGATACCTCCGCCTTCCAAGGCCAATTACGGCAGCTTTTCGATCTTCACGACGCTGGAGTGGACCAATCCTTCATCGACACCCTCCCTGTTTTTGTCTACAAAGCCATAATCGGTTTGAAATTAGACCCATTTGATTGCTCTGTTTGTCTCTGTGAATTTCAGCCAAACGATAAGCTCCGATTGTTGACCAAATGCAGCCATGCCTTTCATATGGACTGCATCGACACTTGGCTGTTGACACATTCCACTTGCCCTCTCTGCCGTGCAAGCTTGATTTCAGATTTCGCCGCCATTAATGGCGGATTCACGTCCCCACTTGTTGAGGTTCTTGAATCTGCAAGTAACAGCTCGAGAGAAATTGGGGACGTTCACACCGGTTCCTTTCTGGGTTTTCTTGGAAATTCCAATTTTGCTGAACTGAAACCAGAGGAACCTCCGGCAGAGGCGGCGGAGAAGGTGGTTCCGATTAAGTTGGGAAAATTCAAAAGCTTGGAGAGATATGGAGAAGGGAGTAGCAACAATGGCAATGTGGATTCAAGAAGATGTTTTTCAATGGGTTCATTTGGGTATGTAATGGACGAGAATTCGTCTCTGCAAGTTCCGATCAGGAAACGCGCGGCGAGGAAACAAGCGATAAAGAAGAAAAATCTGCCATTAACGCCGGGCACTCGAGCGGCGATGTCAGAATGCGATGGCGAATCGAGACGAGAGTTCAATTTCATGGAAACGAATCGGAGAGTCGAGAGTTTCCGCCATGGGAGCTCGAAGGAGAGCTTTGAAGCGAAGGTCGTCGGCGCCGGTGTCGGATTGCCGGTGACTGATTTAGCAAGAAGAGCATTTTCGTTTCATTTTCCGGCAAATTGGAACCGACCCAGATCGGAAAATTGGATGGGAACGATGGATGAAGAGAATCAAAGAAGAAATAGCTCGGAATTTATTGAGAATCAACCGTCGTTTGTGAGAAGAACATTACAGTGGCTGATGGGGAAGAACAACAATAGGATTAATTGA

Protein sequence

MAALSEPISALPPPPPPPETTSDGGFRIDKEVSPTILLAIIILAIVFFFSSLLHLLLRLFLRPQNRTDPEDIAVGDGDTSAFQGQLRQLFDLHDAGVDQSFIDTLPVFVYKAIIGLKLDPFDCSVCLCEFQPNDKLRLLTKCSHAFHMDCIDTWLLTHSTCPLCRASLISDFAAINGGFTSPLVEVLESASNSSREIGDVHTGSFLGFLGNSNFAELKPEEPPAEAAEKVVPIKLGKFKSLERYGEGSSNNGNVDSRRCFSMGSFGYVMDENSSLQVPIRKRAARKQAIKKKNLPLTPGTRAAMSECDGESRREFNFMETNRRVESFRHGSSKESFEAKVVGAGVGLPVTDLARRAFSFHFPANWNRPRSENWMGTMDEENQRRNSSEFIENQPSFVRRTLQWLMGKNNNRIN

Homology

[Close]

BLAST of CmaCh05G006640 vs. ExPASy Swiss-Prot
Match: Q940Q4 (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2)

HSP 1 Score: 306.6 bits (784), Expect = 4.2e-82
Identity = 204/451 (45.23%), Postives = 275/451 (60.98%), Query Frame = 0


Query: 13  PPPPPPETTSDGGFRIDKEVSPTILLAIIILAIVFFFSSLLHLLLRLFLRPQNRTDPEDI 72
           P  PP    S   F ++ ++SP+ILL IIIL+I+FF S LLHLL+R  L P +R D ED 
Sbjct: 28  PQEPPLSLRSSANFDLNSKISPSILLIIIILSIIFFISGLLHLLVRFLLTPSSR-DREDY 87

Query: 73  AVGDGDTSAFQGQLRQLFDLHDAGVDQSFIDTLPVFVYKAIIGLKLDPFDCSVCLCEFQP 132
                + +A QGQL+QLF LHD+GVDQSFIDTLPVF YK+IIGLK  PFDC+VCLCEF+ 
Sbjct: 88  F---DNVTALQGQLQQLFHLHDSGVDQSFIDTLPVFHYKSIIGLKNYPFDCAVCLCEFET 147

Query: 133 NDKLRLLTKCSHAFHMDCIDTWLLTHSTCPLCRASLISDFAAINGGFTSPLVEVLESAS- 192
            DKLRLL KCSHAFHMDCIDTWLL+HSTCPLCR+SL+SD ++     +S L+ VLESAS 
Sbjct: 148 EDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRSSLLSDLSSHQDPRSSFLL-VLESASD 207

Query: 193 NSSREIG-------------DVHTGS-FLGFLGNSNFAELKPEEPPAE---------AAE 252
           +SSREIG             D+   S  LG +GN++    + +    +         +  
Sbjct: 208 HSSREIGGDRDSAACVAANDDIDVSSAHLGLVGNNDLGSTRIDSGHGDQYLDGELGGSVG 267

Query: 253 KVVP--IKLGKFKSLERYGEGSSNNGNV------DSRRCFSMGSFGYVMDENSSLQVPIR 312
           KVVP  +KLGKF++++  GEG+S+N N+      D RRCFSMGS+ Y+MDE ++L+V + 
Sbjct: 268 KVVPFSVKLGKFRNID-IGEGTSSNNNIGNSSSLDERRCFSMGSYEYIMDEETTLKVHV- 327

Query: 313 KRAARKQAIKKKNLPLTPGTRAAMSEC--DGESRREFNFMETNRRVE--SFRHGSSKESF 372
             + +KQ+ K + L   PG R AMSEC  D   R +F+   + R VE  + ++   +ESF
Sbjct: 328 --STKKQSSKNRGL---PGHRTAMSECGFDPTGRLKFSGSGSMRIVEEAAEKNVVERESF 387

Query: 373 -------------EAKVVGAGVGLPVTDLARRAFSFHFPANWNRPRSENWMGTMDEENQR 414
                         +KV G      V+  + RAFSF      N P +    G  +E+NQ+
Sbjct: 388 SVSKIWLRGKKEKHSKVQGKEDSSLVSSSSGRAFSFRLSNQRNHPDAMIESG-CEEDNQK 447

[Close]

BLAST of CmaCh05G006640 vs. ExPASy Swiss-Prot
Match: Q9ZV53 (Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana OX=3702 GN=ATL49 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 2.9e-70
Identity = 172/429 (40.09%), Postives = 244/429 (56.88%), Query Frame = 0


Query: 1   MAALSEPISALPPPPPPPETTSDGGFRIDKEVSPTILLAIIILAIVFFFSSLLHLLLRLF 60
           M +    IS+ PPPP  P  ++     ++ +++P ILL IIIL+I+FF S LLH+L++  
Sbjct: 8   MKSTQNLISSSPPPPLIPLKSNTSLSNLNSKITPNILLIIIILSIIFFISGLLHILVKFL 67

Query: 61  LRPQNRTDPEDIAVGDGDTSAFQGQLRQLFDLHDAGVDQSFIDTLPVFVYKAIIGLKLDP 120
           L P +R   ED      + +A QGQL+QLF+LHD+GVDQS IDTLPVF YK+I+GLK+ P
Sbjct: 68  LTP-SRESREDYF---DNVTALQGQLQQLFNLHDSGVDQSLIDTLPVFHYKSIVGLKISP 127

Query: 121 FDCSVCLCEFQPNDKLRLLTKCSHAFHMDCIDTWLLTHSTCPLCRASLISDFAAINGGFT 180
           FDC VCLCEF+  DKLRLL KCSHAFH++CIDTWLL+HSTCPLCR++L+S F++ +   +
Sbjct: 128 FDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLLSGFSS-HHNLS 187

Query: 181 SPLVEVLESASNSSREIGDVHTGSFLGFLGNSNFAELK---------PEEPPAEAAEKVV 240
           S  + VLES  +S   +  + + S LG+  N++    +         P+       EKVV
Sbjct: 188 SSYLLVLESEQSSRDMVPVLESNSQLGYDVNNDSESTRIRSGRKSCDPDGDMDGLDEKVV 247

Query: 241 P--IKLGKFKSLERYGEG--------SSNNGNVDSRRCFSMGSFGYVMDENSSLQVPIRK 300
           P  +KLGKF++++  GEG        S N+ NVD RRC SMGS+ Y+MD+ ++L+V +  
Sbjct: 248 PLEVKLGKFRNIDHVGEGSDQKKNSISGNSKNVDGRRCLSMGSYEYIMDQEATLKVHVST 307

Query: 301 RAARKQAIKKKNLPLTPGTRAAMSECDGESRREFNFMETNRRVESFRHGSSKESFE-AKV 360
           +       K       P  R  MSEC         F  T + +E  +    +ESF  +K+
Sbjct: 308 K-------KLSGKDRVPSHRTVMSEC--------GFDPTVKGIE--KSVVERESFSLSKI 367

Query: 361 VGAGVGLPVTDLARRAFSFHFPANWNRPRSENWMGTMDEENQRRNSSEFIENQPSFVRRT 410
              G        + R     F ++ +  R  N     +E  +  NS       PSF RRT
Sbjct: 368 WLRGKKEKQKGTSARDSDCSFVSS-SSLRFPNHRIPPEESLKSENSESLETKTPSFARRT 413

[Close]

BLAST of CmaCh05G006640 vs. ExPASy Swiss-Prot
Match: Q8GW38 (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.1e-48
Identity = 112/268 (41.79%), Postives = 161/268 (60.07%), Query Frame = 0


Query: 20  TTSDGGFRIDKEVSPTILLAIIILAIVFFFSSLLHLLLRLFLRPQN---RTDPEDIAVGD 79
           ++S GG   +  +SP IL  I++L+++FF  S+LHLL+R +L+ +     + P +     
Sbjct: 40  SSSSGG---NNRISPIILFIIVLLSVIFFICSILHLLVRYYLKKKRSNLSSSPNESNQNP 99

Query: 80  --GDTSAFQGQLRQLFDLHDAGVDQSFIDTLPVFVYKAIIGLKLDPFDCSVCLCEFQPND 139
              D+  +Q QL+QLF LHD+G+DQ+ ID LPVF+YK I G K +PFDC+VCLCEF  +D
Sbjct: 100 EFSDSDTYQRQLQQLFHLHDSGLDQALIDALPVFLYKEIKGTK-EPFDCAVCLCEFSEDD 159

Query: 140 KLRLLTKCSHAFHMDCIDTWLLTHSTCPLCRASLISDFAAINGGFTSPLVEVLESASNSS 199
           KLRLL  CSHAFH+DCIDTWLL++STCPLCR +L S    +   F  P            
Sbjct: 160 KLRLLPNCSHAFHIDCIDTWLLSNSTCPLCRGTLFS----LGHQFEYP------------ 219

Query: 200 REIGDVHTGSFLGFLGNSNFAELKPEEPPA--EAAEKVVPIKLGKFKSLERY-------- 259
               D + G F G  G      + P + PA  E  ++V  ++LGKF+S            
Sbjct: 220 ----DFNFGFFAGDDGGGG-VRVSPVQKPAENEIGKRVFSVRLGKFRSSNIVNNGEVVVG 279

Query: 260 GEGSSNNGNVDSRRCFSMGSFGYVMDEN 273
           G G +++ ++D+RRCFSMGS+ Y++ E+
Sbjct: 280 GGGETSSSSLDNRRCFSMGSYQYIVAES 282

[Close]

BLAST of CmaCh05G006640 vs. ExPASy Swiss-Prot
Match: Q9FL07 (RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.8e-48
Identity = 120/291 (41.24%), Postives = 165/291 (56.70%), Query Frame = 0


Query: 12  PPPPPPPETTSDGGFRIDKEVSPTILLAIIILAIVFFFSSLLHLLLRLFLRPQNRTDPE- 71
           PP PPPP +           +SP +L  I+ILA++FF S LLHLL+R  ++  + T    
Sbjct: 29  PPSPPPPSS--------GNRISPAVLFVIVILAVLFFISGLLHLLVRFLIKHPSATASSR 88

Query: 72  -----DIAVGDGDTSAFQGQLRQLFDLHDAGVDQSFIDTLPVFVYKAII---------GL 131
                +I+  D    A Q QL+QLF L+D+G+DQ+FID LPVF YK I+         G 
Sbjct: 89  SNRFPEISTSD----ALQRQLQQLFHLNDSGLDQAFIDALPVFHYKEIVGSAGGGGGNGA 148

Query: 132 KLDPFDCSVCLCEFQPNDKLRLLTKCSHAFHMDCIDTWLLTHSTCPLCRASLISDFAAIN 191
             +PFDC+VCLCEF   DKLRLL  CSHAFH++CIDTWL ++STCPLCR +L S      
Sbjct: 149 AQEPFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLCRGTLFSP----- 208

Query: 192 GGFTSPLVEVLESASNSSREIGDVHTGSFLGFLGNSNFAELKPEEPPAEAAEKVVPIKLG 251
            GF         S  N   +  D+      G   N +   ++ +E   E  + V+P++LG
Sbjct: 209 -GF---------SMENPMFDFDDIREDE-EGVTENGSQKTMEIQEIVVE--KGVLPVRLG 268

Query: 252 KFKSLERYGE---------GSSNNGNVDSRRCFSMGSFGYVMDENSSLQVP 279
           KFK L+  G          G +++ N+D+RRCFSMGS+ Y++  NS L+VP
Sbjct: 269 KFKRLDNVGNGQGQDVVAGGETSSSNLDARRCFSMGSYQYILG-NSELKVP 288

[Close]

BLAST of CmaCh05G006640 vs. ExPASy Swiss-Prot
Match: Q9FHG8 (Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana OX=3702 GN=ATL50 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.7e-38
Identity = 84/177 (47.46%), Postives = 120/177 (67.80%), Query Frame = 0


Query: 20  TTSDGGFRIDKEVSPTILLAIIILAIVFFFSSLLHLLLRLFLRPQNRTDPEDIAVGDGDT 79
           +++D  F +   +SP +LL I +L+I+FF ++L+HLL++   RPQ R D     + +  T
Sbjct: 20  SSTDKDFDLICMISPIVLLYITLLSIIFFVAALIHLLVKFLHRPQTRLDDAYDGITESST 79

Query: 80  SAFQGQLRQLFDLHDAGVDQSFIDTLPVFVYKAIIGLKLDPFDCSVCLCEFQPNDKLRLL 139
            A QG+ +  F+LHDA +DQSFID LP+  YK +IGL+ D  DC+VCL EF   D+LRLL
Sbjct: 80  -ALQGRYQTRFNLHDAEIDQSFIDALPLLHYKTMIGLRHDLSDCAVCLREFTAEDELRLL 139

Query: 140 TKCSHAFHMDCIDTWLLTHSTCPLCRASLISDFAAINGGFTSPLVEVLESASNSSRE 197
            KCSHAFH++CIDTWLLT+STCPLCR +L+          +S +V V ES  ++S++
Sbjct: 140 PKCSHAFHVECIDTWLLTNSTCPLCRDNLLL-LGLTGTASSSTIVLVHESDGDNSQD 194

[Close]

BLAST of CmaCh05G006640 vs. TAIR 10
Match: AT4G30400.1 (RING/U-box superfamily protein )

HSP 1 Score: 306.6 bits (784), Expect = 3.0e-83
Identity = 204/451 (45.23%), Postives = 275/451 (60.98%), Query Frame = 0


Query: 13  PPPPPPETTSDGGFRIDKEVSPTILLAIIILAIVFFFSSLLHLLLRLFLRPQNRTDPEDI 72
           P  PP    S   F ++ ++SP+ILL IIIL+I+FF S LLHLL+R  L P +R D ED 
Sbjct: 28  PQEPPLSLRSSANFDLNSKISPSILLIIIILSIIFFISGLLHLLVRFLLTPSSR-DREDY 87

Query: 73  AVGDGDTSAFQGQLRQLFDLHDAGVDQSFIDTLPVFVYKAIIGLKLDPFDCSVCLCEFQP 132
                + +A QGQL+QLF LHD+GVDQSFIDTLPVF YK+IIGLK  PFDC+VCLCEF+ 
Sbjct: 88  F---DNVTALQGQLQQLFHLHDSGVDQSFIDTLPVFHYKSIIGLKNYPFDCAVCLCEFET 147

Query: 133 NDKLRLLTKCSHAFHMDCIDTWLLTHSTCPLCRASLISDFAAINGGFTSPLVEVLESAS- 192
            DKLRLL KCSHAFHMDCIDTWLL+HSTCPLCR+SL+SD ++     +S L+ VLESAS 
Sbjct: 148 EDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRSSLLSDLSSHQDPRSSFLL-VLESASD 207

Query: 193 NSSREIG-------------DVHTGS-FLGFLGNSNFAELKPEEPPAE---------AAE 252
           +SSREIG             D+   S  LG +GN++    + +    +         +  
Sbjct: 208 HSSREIGGDRDSAACVAANDDIDVSSAHLGLVGNNDLGSTRIDSGHGDQYLDGELGGSVG 267

Query: 253 KVVP--IKLGKFKSLERYGEGSSNNGNV------DSRRCFSMGSFGYVMDENSSLQVPIR 312
           KVVP  +KLGKF++++  GEG+S+N N+      D RRCFSMGS+ Y+MDE ++L+V + 
Sbjct: 268 KVVPFSVKLGKFRNID-IGEGTSSNNNIGNSSSLDERRCFSMGSYEYIMDEETTLKVHV- 327

Query: 313 KRAARKQAIKKKNLPLTPGTRAAMSEC--DGESRREFNFMETNRRVE--SFRHGSSKESF 372
             + +KQ+ K + L   PG R AMSEC  D   R +F+   + R VE  + ++   +ESF
Sbjct: 328 --STKKQSSKNRGL---PGHRTAMSECGFDPTGRLKFSGSGSMRIVEEAAEKNVVERESF 387

Query: 373 -------------EAKVVGAGVGLPVTDLARRAFSFHFPANWNRPRSENWMGTMDEENQR 414
                         +KV G      V+  + RAFSF      N P +    G  +E+NQ+
Sbjct: 388 SVSKIWLRGKKEKHSKVQGKEDSSLVSSSSGRAFSFRLSNQRNHPDAMIESG-CEEDNQK 447

[Close]

BLAST of CmaCh05G006640 vs. TAIR 10
Match: AT2G18650.1 (RING/U-box superfamily protein )

HSP 1 Score: 267.3 bits (682), Expect = 2.0e-71
Identity = 172/429 (40.09%), Postives = 244/429 (56.88%), Query Frame = 0


Query: 1   MAALSEPISALPPPPPPPETTSDGGFRIDKEVSPTILLAIIILAIVFFFSSLLHLLLRLF 60
           M +    IS+ PPPP  P  ++     ++ +++P ILL IIIL+I+FF S LLH+L++  
Sbjct: 8   MKSTQNLISSSPPPPLIPLKSNTSLSNLNSKITPNILLIIIILSIIFFISGLLHILVKFL 67

Query: 61  LRPQNRTDPEDIAVGDGDTSAFQGQLRQLFDLHDAGVDQSFIDTLPVFVYKAIIGLKLDP 120
           L P +R   ED      + +A QGQL+QLF+LHD+GVDQS IDTLPVF YK+I+GLK+ P
Sbjct: 68  LTP-SRESREDYF---DNVTALQGQLQQLFNLHDSGVDQSLIDTLPVFHYKSIVGLKISP 127

Query: 121 FDCSVCLCEFQPNDKLRLLTKCSHAFHMDCIDTWLLTHSTCPLCRASLISDFAAINGGFT 180
           FDC VCLCEF+  DKLRLL KCSHAFH++CIDTWLL+HSTCPLCR++L+S F++ +   +
Sbjct: 128 FDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLLSGFSS-HHNLS 187

Query: 181 SPLVEVLESASNSSREIGDVHTGSFLGFLGNSNFAELK---------PEEPPAEAAEKVV 240
           S  + VLES  +S   +  + + S LG+  N++    +         P+       EKVV
Sbjct: 188 SSYLLVLESEQSSRDMVPVLESNSQLGYDVNNDSESTRIRSGRKSCDPDGDMDGLDEKVV 247

Query: 241 P--IKLGKFKSLERYGEG--------SSNNGNVDSRRCFSMGSFGYVMDENSSLQVPIRK 300
           P  +KLGKF++++  GEG        S N+ NVD RRC SMGS+ Y+MD+ ++L+V +  
Sbjct: 248 PLEVKLGKFRNIDHVGEGSDQKKNSISGNSKNVDGRRCLSMGSYEYIMDQEATLKVHVST 307

Query: 301 RAARKQAIKKKNLPLTPGTRAAMSECDGESRREFNFMETNRRVESFRHGSSKESFE-AKV 360
           +       K       P  R  MSEC         F  T + +E  +    +ESF  +K+
Sbjct: 308 K-------KLSGKDRVPSHRTVMSEC--------GFDPTVKGIE--KSVVERESFSLSKI 367

Query: 361 VGAGVGLPVTDLARRAFSFHFPANWNRPRSENWMGTMDEENQRRNSSEFIENQPSFVRRT 410
              G        + R     F ++ +  R  N     +E  +  NS       PSF RRT
Sbjct: 368 WLRGKKEKQKGTSARDSDCSFVSS-SSLRFPNHRIPPEESLKSENSESLETKTPSFARRT 413

[Close]

BLAST of CmaCh05G006640 vs. TAIR 10
Match: AT1G23980.1 (RING/U-box superfamily protein )

HSP 1 Score: 195.7 bits (496), Expect = 7.5e-50
Identity = 112/268 (41.79%), Postives = 161/268 (60.07%), Query Frame = 0


Query: 20  TTSDGGFRIDKEVSPTILLAIIILAIVFFFSSLLHLLLRLFLRPQN---RTDPEDIAVGD 79
           ++S GG   +  +SP IL  I++L+++FF  S+LHLL+R +L+ +     + P +     
Sbjct: 40  SSSSGG---NNRISPIILFIIVLLSVIFFICSILHLLVRYYLKKKRSNLSSSPNESNQNP 99

Query: 80  --GDTSAFQGQLRQLFDLHDAGVDQSFIDTLPVFVYKAIIGLKLDPFDCSVCLCEFQPND 139
              D+  +Q QL+QLF LHD+G+DQ+ ID LPVF+YK I G K +PFDC+VCLCEF  +D
Sbjct: 100 EFSDSDTYQRQLQQLFHLHDSGLDQALIDALPVFLYKEIKGTK-EPFDCAVCLCEFSEDD 159

Query: 140 KLRLLTKCSHAFHMDCIDTWLLTHSTCPLCRASLISDFAAINGGFTSPLVEVLESASNSS 199
           KLRLL  CSHAFH+DCIDTWLL++STCPLCR +L S    +   F  P            
Sbjct: 160 KLRLLPNCSHAFHIDCIDTWLLSNSTCPLCRGTLFS----LGHQFEYP------------ 219

Query: 200 REIGDVHTGSFLGFLGNSNFAELKPEEPPA--EAAEKVVPIKLGKFKSLERY-------- 259
               D + G F G  G      + P + PA  E  ++V  ++LGKF+S            
Sbjct: 220 ----DFNFGFFAGDDGGGG-VRVSPVQKPAENEIGKRVFSVRLGKFRSSNIVNNGEVVVG 279

Query: 260 GEGSSNNGNVDSRRCFSMGSFGYVMDEN 273
           G G +++ ++D+RRCFSMGS+ Y++ E+
Sbjct: 280 GGGETSSSSLDNRRCFSMGSYQYIVAES 282

[Close]

BLAST of CmaCh05G006640 vs. TAIR 10
Match: AT5G40250.1 (RING/U-box superfamily protein )

HSP 1 Score: 194.9 bits (494), Expect = 1.3e-49
Identity = 120/291 (41.24%), Postives = 165/291 (56.70%), Query Frame = 0


Query: 12  PPPPPPPETTSDGGFRIDKEVSPTILLAIIILAIVFFFSSLLHLLLRLFLRPQNRTDPE- 71
           PP PPPP +           +SP +L  I+ILA++FF S LLHLL+R  ++  + T    
Sbjct: 29  PPSPPPPSS--------GNRISPAVLFVIVILAVLFFISGLLHLLVRFLIKHPSATASSR 88

Query: 72  -----DIAVGDGDTSAFQGQLRQLFDLHDAGVDQSFIDTLPVFVYKAII---------GL 131
                +I+  D    A Q QL+QLF L+D+G+DQ+FID LPVF YK I+         G 
Sbjct: 89  SNRFPEISTSD----ALQRQLQQLFHLNDSGLDQAFIDALPVFHYKEIVGSAGGGGGNGA 148

Query: 132 KLDPFDCSVCLCEFQPNDKLRLLTKCSHAFHMDCIDTWLLTHSTCPLCRASLISDFAAIN 191
             +PFDC+VCLCEF   DKLRLL  CSHAFH++CIDTWL ++STCPLCR +L S      
Sbjct: 149 AQEPFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLCRGTLFSP----- 208

Query: 192 GGFTSPLVEVLESASNSSREIGDVHTGSFLGFLGNSNFAELKPEEPPAEAAEKVVPIKLG 251
            GF         S  N   +  D+      G   N +   ++ +E   E  + V+P++LG
Sbjct: 209 -GF---------SMENPMFDFDDIREDE-EGVTENGSQKTMEIQEIVVE--KGVLPVRLG 268

Query: 252 KFKSLERYGE---------GSSNNGNVDSRRCFSMGSFGYVMDENSSLQVP 279
           KFK L+  G          G +++ N+D+RRCFSMGS+ Y++  NS L+VP
Sbjct: 269 KFKRLDNVGNGQGQDVVAGGETSSSNLDARRCFSMGSYQYILG-NSELKVP 288

[Close]

BLAST of CmaCh05G006640 vs. TAIR 10
Match: AT5G57750.1 (RING/U-box superfamily protein )

HSP 1 Score: 161.8 bits (408), Expect = 1.2e-39
Identity = 84/177 (47.46%), Postives = 120/177 (67.80%), Query Frame = 0


Query: 20  TTSDGGFRIDKEVSPTILLAIIILAIVFFFSSLLHLLLRLFLRPQNRTDPEDIAVGDGDT 79
           +++D  F +   +SP +LL I +L+I+FF ++L+HLL++   RPQ R D     + +  T
Sbjct: 20  SSTDKDFDLICMISPIVLLYITLLSIIFFVAALIHLLVKFLHRPQTRLDDAYDGITESST 79

Query: 80  SAFQGQLRQLFDLHDAGVDQSFIDTLPVFVYKAIIGLKLDPFDCSVCLCEFQPNDKLRLL 139
            A QG+ +  F+LHDA +DQSFID LP+  YK +IGL+ D  DC+VCL EF   D+LRLL
Sbjct: 80  -ALQGRYQTRFNLHDAEIDQSFIDALPLLHYKTMIGLRHDLSDCAVCLREFTAEDELRLL 139

Query: 140 TKCSHAFHMDCIDTWLLTHSTCPLCRASLISDFAAINGGFTSPLVEVLESASNSSRE 197
            KCSHAFH++CIDTWLLT+STCPLCR +L+          +S +V V ES  ++S++
Sbjct: 140 PKCSHAFHVECIDTWLLTNSTCPLCRDNLLL-LGLTGTASSSTIVLVHESDGDNSQD 194

The following BLAST results are available for this feature:

BLAST of CmaCh05G006640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940Q4	4.2e-82	45.23	RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2	[more]
Q9ZV53	2.9e-70	40.09	Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana OX=3702 GN=ATL49 P...	[more]
Q8GW38	1.1e-48	41.79	RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1	[more]
Q9FL07	1.8e-48	41.24	RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1	[more]
Q9FHG8	1.7e-38	47.46	Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana OX=3702 GN=ATL50 P...	[more]

BLAST of CmaCh05G006640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30400.1	3.0e-83	45.23	RING/U-box superfamily protein	[more]
AT2G18650.1	2.0e-71	40.09	RING/U-box superfamily protein	[more]
AT1G23980.1	7.5e-50	41.79	RING/U-box superfamily protein	[more]
AT5G40250.1	1.3e-49	41.24	RING/U-box superfamily protein	[more]
AT5G57750.1	1.2e-39	47.46	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 123..164 e-value: 4.6E-5 score: 32.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 122..165 e-value: 1.8E-12 score: 47.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 123..165 score: 12.489278
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 87..170 e-value: 1.7E-20 score: 74.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR45768:SF53	ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED	coord: 10..337
None	No IPR available	PANTHER	PTHR45768	E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE	coord: 10..337
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 122..165 e-value: 4.20403E-20 score: 80.8089
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 107..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G006640.1	CmaCh05G006640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0031625	ubiquitin protein ligase binding