CmaCh05G006620 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G006620
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	sequence-specific DNA binding transcription factors;transcription regulators
Location	Cma_Chr05: 3392651 .. 3392965 (+)
RNA-Seq Expression	CmaCh05G006620
Synteny	CmaCh05G006620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTCTATCCACTCATTCCGACAAAGAAGACAAGCCACCTCCACAGCCAATCTCAAACCAGCAAGGAGGAGAAGGCTAAAGCTTGTTCACCTCCCAAAAAACACCTCCTCCTCCGCCATCTCCGCCGCAGCCACCGGAACAACCCCCTCCCCCGCCATGCACAAACGGCTGAGAAATCTGCAGAGGCTGGTCCCCGGGCACAACCATGATACCGACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCCAGGCTTTACAACTTAAGCTCAACATCCTCAAAGATCTCACCTCTTTCTATGGCCTTTGA

mRNA sequence

ATGAGGTCTATCCACTCATTCCGACAAAGAAGACAAGCCACCTCCACAGCCAATCTCAAACCAGCAAGGAGGAGAAGGCTAAAGCTTGTTCACCTCCCAAAAAACACCTCCTCCTCCGCCATCTCCGCCGCAGCCACCGGAACAACCCCCTCCCCCGCCATGCACAAACGGCTGAGAAATCTGCAGAGGCTGGTCCCCGGGCACAACCATGATACCGACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCCAGGCTTTACAACTTAAGCTCAACATCCTCAAAGATCTCACCTCTTTCTATGGCCTTTGA

Coding sequence (CDS)

ATGAGGTCTATCCACTCATTCCGACAAAGAAGACAAGCCACCTCCACAGCCAATCTCAAACCAGCAAGGAGGAGAAGGCTAAAGCTTGTTCACCTCCCAAAAAACACCTCCTCCTCCGCCATCTCCGCCGCAGCCACCGGAACAACCCCCTCCCCCGCCATGCACAAACGGCTGAGAAATCTGCAGAGGCTGGTCCCCGGGCACAACCATGATACCGACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCCAGGCTTTACAACTTAAGCTCAACATCCTCAAAGATCTCACCTCTTTCTATGGCCTTTGA

Protein sequence

MRSIHSFRQRRQATSTANLKPARRRRLKLVHLPKNTSSSAISAAATGTTPSPAMHKRLRNLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL

Homology

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BLAST of CmaCh05G006620 vs. TAIR 10
Match: AT2G47270.1 (sequence-specific DNA binding transcription factors;transcription regulators )

HSP 1 Score: 42.0 bits (97), Expect = 3.5e-04
Identity = 25/77 (32.47%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 22 ARRRRLKLVHLPKNTSSSAISAAATGTTPSPAMHKRLRNLQRLVPGHNHDTDLNHLFQRT 81
          ARR  +K + +    S  A         P  A+H+R++ L+ LVP       L+ LF++T
Sbjct: 22 ARRALVKKIMIRPRKSVEA------SRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQT 81

Query: 82 ADYIQALQLKLNILKDL 99
          ADYI AL++K+ +++ +
Sbjct: 82 ADYILALEMKVKVMQTM 92

The following BLAST results are available for this feature:

BLAST of CmaCh05G006620 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh05G006620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47270.1	3.5e-04	32.47	sequence-specific DNA binding transcription factors;transcription regulators	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
None	No IPR available	PANTHER	PTHR33124:SF9	TRANSCRIPTION FACTOR	coord: 12..102
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 12..102
IPR044549	Transcription factor IBH1-like, bHLH domain	CDD	cd11444	bHLH_AtIBH1_like	coord: 48..99 e-value: 5.49877E-14 score: 59.1732
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 54..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G006620.1	CmaCh05G006620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0046983	protein dimerization activity