CmaCh05G005630 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G005630
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	transcription factor bHLH93-like
Location	Cma_Chr05: 2765253 .. 2767379 (+)
RNA-Seq Expression	CmaCh05G005630
Synteny	CmaCh05G005630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAGAGAGGTTGAGAGAGAGAGAACGATGGAGCTCGACGAGCACATTTTCTTGGAGGAGTTGATGGCTCTACGAAGAGATTCAAATTGGGACGCCATTCCAAATGAAATTAGCGATTTCTGTTGGAATGCTTGGGCATTTGATTACTGTTTCGATCAAAGCAGTATGAATTTCCACCCAAATTCTTCGTCGGAACCTCTCTCTGCGCAGAATCTGGACGAGTTTTACCATCCTTTGGGAAATGAGTTCTCAGTGCCAGGAATGGCCGATTCCGCCTATGCCGCCATGGAAGTAGAAGCGGCGCCTCTGCCATTTCAAGCAGAGCGTCCGAATGCGGAGCGAGAAGGAGAAGGAGAAGGAGAAGAAGAGGAGGAACTAGGTTTTCTTGCGGATGAGATTCAGAATATGGAGGTGGTTCAAGTTCAATCGGCTTGCAAAATGGAGCCGAATCAATCTCCAGACCTCCCTGTTTTCAACATCGGAACATGCTCCTCCATCGAACGAAAGAACAGATCGAAGAAATTGCAAGGCCAACCGTCAAAGAATCTGATGGCGGAGAGACGGAGAAGGAAGCGCTTGAACGATCGCCTCTCCATGCTCAGATCCATCGTGCCTAAGATCAGCAAGGTAAAAAATTAAACGAGTTTTAATTACAGAAATGCTCGAAAATGAATCTCCGAGGCTGCTTGAAACCGAAATCATTATCTGGTTGATTTTTGAACAGATGGACCGAACTGCGATTCTGGCAGATGCGATTGAGTACATGAAAGAATTGCTGGAGAAGATCGGGAATCTGCAGAGAGAAGTGGACGGATCAAATCCAAGGACGAATTCATTGAACAACACAAAACCGAGCGAATTGGTAGCGAGAAATTCACCAAAAGTAATCCAACTTTTTCTGGCTTTTCCGTCTTTTGATACAAGCACTCGATTATTGTTGTTACCGAAACTGATTAGTTCCAAATCGTGGGCGTACAGTTTGAGGTGGAAAGCAGAATGGGGAAGACGAGGATCGAGATTTGCTGTGCGGCGAAACCAGGATTGATATTATCGACGGTGAATACGATTGAAGCGTTGGGGCTTGAGATTCAACAGTGCGTTATTAGCAGCTTCAATGATTTCGCATTGCAAGCCACTTGTTCTTCTCAGGTAATGCCTCCTTCTTCTTCCACTTTGTTTATTATAATTATTTATTTCCATTTCATTAATATTTTAAATTCTCAATTAAATCTTGGAAAAAAAAAAATTATTGAGCTCGAGTTTTTTATTTGATTTTTTAAAATAGAAAGTAATGTTTATTAACTAGAAATAGTAAGATGAGAAAGTAGGGTTAATAAAGTAAAATACATTTAGTCTTTAATTTTGATTATTTTATTTTTAGAGTCTTATTTCCATTTAGTTTCTAAGTTCTTTATTTTCCATTAAATACTCACTTTCAAAGTTAATGTTAATGTCTATTAACGAACATTTAAGTTAAATTATTTTAATTTTCATAATTTGTGAAATTAATTTAAAATTTTATTGAAAAGATTAAAAGTGAGCATTAGTGGCAACATGATGGTAAAACTGAAAAATATTGAGACCTAAAGATCAAATAAAAATAAAAATAAAAATAAAAACTCAAAATTCAAAGTACAATGTTTTTAAAACCTAAATAGAAATTCAAATTCAAATTTTAATATTCAAATAAAAATTCTAATTTAGATAAAATTGGGTGAAAGTCAAATTTTGTAGTAAACAGCCATTAGAATTTTTGTGCCCATGGATAAATGCGGTAATTATTATTTTATAGATTGATTACTCTACTAATTGTTTAAGTAAAAAAATGATTTTTTTAAAAAGAAAATAAAAATACAAACTCATTTATAAAGTATCCTTGTTTTTAAAAGAAAAGGTCTTTGTTTACTATTGTTATTATTATTTGAATAATAATCTACGCAATGTTTTGTATTTATTGAAAAAAATATATATTTTTATTATTATTATTTTTTTTTCTAAAATAGAATTAATTTGTGTAAAAAAAAAATTGATTTGAAAATAGGAAATGAAGCAGAGAATAGAACTGAAGCCTGGAGAAGTGAAGGAAGCTTTATTTAGGAATGCAGGTTATGGGGGAAGCTGCTTGTAG

mRNA sequence

TAAGAGAGGTTGAGAGAGAGAGAACGATGGAGCTCGACGAGCACATTTTCTTGGAGGAGTTGATGGCTCTACGAAGAGATTCAAATTGGGACGCCATTCCAAATGAAATTAGCGATTTCTGTTGGAATGCTTGGGCATTTGATTACTGTTTCGATCAAAGCAGTATGAATTTCCACCCAAATTCTTCGTCGGAACCTCTCTCTGCGCAGAATCTGGACGAGTTTTACCATCCTTTGGGAAATGAGTTCTCAGTGCCAGGAATGGCCGATTCCGCCTATGCCGCCATGGAAGTAGAAGCGGCGCCTCTGCCATTTCAAGCAGAGCGTCCGAATGCGGAGCGAGAAGGAGAAGGAGAAGGAGAAGAAGAGGAGGAACTAGGTTTTCTTGCGGATGAGATTCAGAATATGGAGGTGGTTCAAGTTCAATCGGCTTGCAAAATGGAGCCGAATCAATCTCCAGACCTCCCTGTTTTCAACATCGGAACATGCTCCTCCATCGAACGAAAGAACAGATCGAAGAAATTGCAAGGCCAACCGTCAAAGAATCTGATGGCGGAGAGACGGAGAAGGAAGCGCTTGAACGATCGCCTCTCCATGCTCAGATCCATCGTGCCTAAGATCAGCAAGATGGACCGAACTGCGATTCTGGCAGATGCGATTGAGTACATGAAAGAATTGCTGGAGAAGATCGGGAATCTGCAGAGAGAAGTGGACGGATCAAATCCAAGGACGAATTCATTGAACAACACAAAACCGAGCGAATTGGTAGCGAGAAATTCACCAAAATTTGAGGTGGAAAGCAGAATGGGGAAGACGAGGATCGAGATTTGCTGTGCGGCGAAACCAGGATTGATATTATCGACGGTGAATACGATTGAAGCGTTGGGGCTTGAGATTCAACAGTGCGTTATTAGCAGCTTCAATGATTTCGCATTGCAAGCCACTTGTTCTTCTCAGGAAATGAAGCAGAGAATAGAACTGAAGCCTGGAGAAGTGAAGGAAGCTTTATTTAGGAATGCAGGTTATGGGGGAAGCTGCTTGTAG

Coding sequence (CDS)

ATGGAGCTCGACGAGCACATTTTCTTGGAGGAGTTGATGGCTCTACGAAGAGATTCAAATTGGGACGCCATTCCAAATGAAATTAGCGATTTCTGTTGGAATGCTTGGGCATTTGATTACTGTTTCGATCAAAGCAGTATGAATTTCCACCCAAATTCTTCGTCGGAACCTCTCTCTGCGCAGAATCTGGACGAGTTTTACCATCCTTTGGGAAATGAGTTCTCAGTGCCAGGAATGGCCGATTCCGCCTATGCCGCCATGGAAGTAGAAGCGGCGCCTCTGCCATTTCAAGCAGAGCGTCCGAATGCGGAGCGAGAAGGAGAAGGAGAAGGAGAAGAAGAGGAGGAACTAGGTTTTCTTGCGGATGAGATTCAGAATATGGAGGTGGTTCAAGTTCAATCGGCTTGCAAAATGGAGCCGAATCAATCTCCAGACCTCCCTGTTTTCAACATCGGAACATGCTCCTCCATCGAACGAAAGAACAGATCGAAGAAATTGCAAGGCCAACCGTCAAAGAATCTGATGGCGGAGAGACGGAGAAGGAAGCGCTTGAACGATCGCCTCTCCATGCTCAGATCCATCGTGCCTAAGATCAGCAAGATGGACCGAACTGCGATTCTGGCAGATGCGATTGAGTACATGAAAGAATTGCTGGAGAAGATCGGGAATCTGCAGAGAGAAGTGGACGGATCAAATCCAAGGACGAATTCATTGAACAACACAAAACCGAGCGAATTGGTAGCGAGAAATTCACCAAAATTTGAGGTGGAAAGCAGAATGGGGAAGACGAGGATCGAGATTTGCTGTGCGGCGAAACCAGGATTGATATTATCGACGGTGAATACGATTGAAGCGTTGGGGCTTGAGATTCAACAGTGCGTTATTAGCAGCTTCAATGATTTCGCATTGCAAGCCACTTGTTCTTCTCAGGAAATGAAGCAGAGAATAGAACTGAAGCCTGGAGAAGTGAAGGAAGCTTTATTTAGGAATGCAGGTTATGGGGGAAGCTGCTTGTAG

Protein sequence

MELDEHIFLEELMALRRDSNWDAIPNEISDFCWNAWAFDYCFDQSSMNFHPNSSSEPLSAQNLDEFYHPLGNEFSVPGMADSAYAAMEVEAAPLPFQAERPNAEREGEGEGEEEEELGFLADEIQNMEVVQVQSACKMEPNQSPDLPVFNIGTCSSIERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELLEKIGNLQREVDGSNPRTNSLNNTKPSELVARNSPKFEVESRMGKTRIEICCAAKPGLILSTVNTIEALGLEIQQCVISSFNDFALQATCSSQEMKQRIELKPGEVKEALFRNAGYGGSCL

Homology

[Close]

BLAST of CmaCh05G005630 vs. ExPASy Swiss-Prot
Match: Q9LSL1 (Transcription factor bHLH93 OS=Arabidopsis thaliana OX=3702 GN=BHLH93 PE=1 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 4.1e-59
Identity = 128/209 (61.24%), Postives = 159/209 (76.08%), Query Frame = 0


Query: 138 MEPNQSPDLPVFNIGTCSSIERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPK 197
           ME +QS     F++G C     K +SKKL+GQPSKNLMAERRRRKRLNDRLSMLRSIVPK
Sbjct: 147 MESDQSKS---FSVGYCGGETNKKKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPK 206

Query: 198 ISKMDRTAILADAIEYMKELLEKIGNLQ---REVDGSNPRTNS-----LNNTKPSELVAR 257
           ISKMDRT+IL DAI+YMKELL+KI  LQ   +E+  SN   +S     L +   +E + R
Sbjct: 207 ISKMDRTSILGDAIDYMKELLDKINKLQDEEQELGNSNNSHHSKLFGDLKDLNANEPLVR 266

Query: 258 NSPKFEVESRMGKTRIEICCAAKPGLILSTVNTIEALGLEIQQCVISSFNDFALQATCSS 317
           NSPKFE++ R   TR++ICC+ KPGL+LSTVNT+E LGLEI+QCVIS F+DF+LQA+C S
Sbjct: 267 NSPKFEIDRRDEDTRVDICCSPKPGLLLSTVNTLETLGLEIEQCVISCFSDFSLQASC-S 326

Query: 318 QEMKQRIELKPGEVKEALFRNAGYGGSCL 339
           +  +QR  +   ++K+ALFRNAGYGGSCL
Sbjct: 327 EGAEQRDFITSEDIKQALFRNAGYGGSCL 351

[Close]

BLAST of CmaCh05G005630 vs. ExPASy Swiss-Prot
Match: Q10S44 (Transcription factor BHLH3 OS=Oryza sativa subsp. japonica OX=39947 GN=BHLH3 PE=1 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 8.6e-49
Identity = 146/374 (39.04%), Postives = 197/374 (52.67%), Query Frame = 0


Query: 1   MELDEHIFLEELMALRRDSN--WDAIPNE------------ISDFCWNAWAFDYCFDQSS 60
           MELDE  FL+ELM+LRRD +  W A P              +SD  +      Y  D  S
Sbjct: 1   MELDEESFLDELMSLRRDGSAPWQAPPYPGGGGGGGGGGMMMSDLLF------YGGDGGS 60

Query: 61  MNFHPNSSSEP---LSAQNLDEFYHPLGNEFSVPGMADSAYAAMEVEAAPLPFQAERPNA 120
                   + P   L++       HP   EF+   +++         A  +P        
Sbjct: 61  AEARGGMDASPFQELASMAAPPPQHP-HEEFNFDCLSEVCNPYRSCGAQLVP-------- 120

Query: 121 EREGEGEGEEEEELGFLADEIQNMEVVQVQSACKMEPNQSPDLPVFNIGTCSSIERK--- 180
               E   + + +L  L D +   E      A  +        P F  G  +    +   
Sbjct: 121 ---SEAASQTQTQLTPLRDAMVAEEETSGDKAL-LHGGGGSSSPTFMFGGGAGESSEMMA 180

Query: 181 ---------NRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAI 240
                    +   KL G PSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRT+IL D I
Sbjct: 181 GIRGVGGGVHPRSKLHGTPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTI 240

Query: 241 EYMKELLEKIGNLQREVDGSNPRTNSLNNTKPS------ELVARNSPKFEVESR-MGKTR 300
           +Y+KEL E+I  L+ E+  +    + LN  K S      E++ RNS KF+VE+R  G TR
Sbjct: 241 DYVKELTERIKTLEEEIGVTPEELDLLNTMKDSSSGNNNEMLVRNSTKFDVENRGSGNTR 300

Query: 301 IEICCAAKPGLILSTVNTIEALGLEIQQCVISSFNDFALQATCSSQEMKQRIELKPGEVK 339
           IEICC A PG++LSTV+ +E LGLEI+QCV+S F+DF +QA+C  ++ K+++ +   E+K
Sbjct: 301 IEICCPANPGVLLSTVSALEVLGLEIEQCVVSCFSDFGMQASCLQEDGKRQV-VSTDEIK 354

[Close]

BLAST of CmaCh05G005630 vs. ExPASy Swiss-Prot
Match: Q9LXA9 (Transcription factor bHLH61 OS=Arabidopsis thaliana OX=3702 GN=BHLH61 PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 8.6e-49
Identity = 143/325 (44.00%), Postives = 181/325 (55.69%), Query Frame = 0


Query: 28  ISDFCWNAWAFDY-CFD---QSSMNF-HPNSSSEPLSAQNLDEFYHPLGNEFSVPGMADS 87
           I  F  N W FDY CF+   Q   N  HP+SSS              L N  S P     
Sbjct: 26  IDQFVPNDWNFDYLCFNNLLQEDDNIDHPSSSS--------------LMNLISQP----- 85

Query: 88  AYAAMEVEAAPLPFQAERPNAEREGEGEGEEEEELGFLADEIQN-------MEVVQVQSA 147
                     PL  Q  +P++            +  FL D I +       +     ++ 
Sbjct: 86  ---------PPLLHQPPQPSSPLYDSPPLSSAFDYPFLEDIIHSSYSPPPLILPASQENT 145

Query: 148 CKMEPNQSPDLPVFNIGTCSSIERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIV 207
               P         +IG      +K  +KKL+GQPSKNLMAERRRRKRLNDRLS+LRSIV
Sbjct: 146 NNYSPLMEESKSFISIG---ETNKKRSNKKLEGQPSKNLMAERRRRKRLNDRLSLLRSIV 205

Query: 208 PKISKMDRTAILADAIEYMKELLEKIGNLQREVD--GSNPRTNSLNNTKPSELVARNSPK 267
           PKI+KMDRT+IL DAI+YMKELL+KI  LQ +    GSN   ++L     +E + RNS K
Sbjct: 206 PKITKMDRTSILGDAIDYMKELLDKINKLQEDEQELGSNSHLSTLIT---NESMVRNSLK 265

Query: 268 FEVESRMGKTRIEICCAAKPGLILSTVNTIEALGLEIQQCVISSFNDFALQATCSSQEMK 327
           FEV+ R   T I+ICC  KPGL++STV+T+E LGLEI+QCVIS F+DF+LQA+C  +  +
Sbjct: 266 FEVDQREVNTHIDICCPTKPGLVVSTVSTLETLGLEIEQCVISCFSDFSLQASC-FEVGE 315

Query: 328 QRIELKPGEVKEALFRNAGYGGSCL 339
           QR  +     K+AL RNAGYGG CL
Sbjct: 326 QRYMVTSEATKQALIRNAGYGGRCL 315

[Close]

BLAST of CmaCh05G005630 vs. ExPASy Swiss-Prot
Match: Q336V8 (Basic helix-loop-helix protein 004 OS=Oryza sativa subsp. japonica OX=39947 GN=BHLH004 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 6.4e-44
Identity = 105/204 (51.47%), Postives = 137/204 (67.16%), Query Frame = 0


Query: 152 GTCSSIERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAI 211
           G  +S+  ++      G PSKNLMAERRRRKRLNDRLSMLRS+VP+ISKMDRT+IL D I
Sbjct: 176 GAAASVRPRSCRPPQPGAPSKNLMAERRRRKRLNDRLSMLRSVVPRISKMDRTSILGDTI 235

Query: 212 EYMKELLEKIGNLQREV---DGSNPRTNSLNNTKPSEL-------------VARNSPKFE 271
            Y+KEL+++I NLQ E    D S+  T +L+  K + L             + RNS +FE
Sbjct: 236 GYVKELMDRIKNLQVEAATGDSSSSSTENLSMLKLNTLKPPPSSSSGEETPLIRNSTRFE 295

Query: 272 VESR-MGKTRIEICCAAKPGLILSTVNTIEALGLEIQQCVISSFNDFALQATCSSQEMKQ 331
           VE R  G TRIE+ CAA P L+ ST+  +EALG+EI+QCVIS F+DFA+QA+C   + K+
Sbjct: 296 VERRENGSTRIEMACAAIPELLPSTLAALEALGVEIEQCVISCFDDFAMQASCLQDDKKR 355

Query: 332 RIELKPGEVKEALFRNAGYGGSCL 339
            +     E+K+ LFR+AGYG  CL
Sbjct: 356 EMTRDTEEIKQTLFRSAGYGDGCL 379

[Close]

BLAST of CmaCh05G005630 vs. ExPASy Swiss-Prot
Match: Q9LPW3 (Transcription factor SCREAM2 OS=Arabidopsis thaliana OX=3702 GN=SCRM2 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.7e-33
Identity = 87/194 (44.85%), Postives = 123/194 (63.40%), Query Frame = 0


Query: 161 NRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELLEK 220
           N   K +G P+KNLMAERRRRK+LNDRL MLRS+VPKISKMDR +IL DAI+Y+KELL++
Sbjct: 256 NNKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQR 315

Query: 221 IGNLQREVDGSNPRTNSLNNTKPS----------ELVARNS--------PKFEVESRMGK 280
           I +L  E++ + P ++SL+   P+          EL   +S        P+ EV  R GK
Sbjct: 316 INDLHTELESTPPSSSSLHPLTPTPQTLSYRVKEELCPSSSLPSPKGQQPRVEVRLREGK 375

Query: 281 -TRIEICCAAKPGLILSTVNTIEALGLEIQQCVISSFNDFALQATCSSQEMKQRIELKPG 336
              I + C  +PGL+LST+  ++ LGL++QQ VIS FN FAL     +++ ++  ++ P 
Sbjct: 376 AVNIHMFCGRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALD-VFRAEQCQEDHDVLPE 435

[Close]

BLAST of CmaCh05G005630 vs. TAIR 10
Match: AT5G65640.1 (beta HLH protein 93 )

HSP 1 Score: 229.9 bits (585), Expect = 2.9e-60
Identity = 128/209 (61.24%), Postives = 159/209 (76.08%), Query Frame = 0


Query: 138 MEPNQSPDLPVFNIGTCSSIERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPK 197
           ME +QS     F++G C     K +SKKL+GQPSKNLMAERRRRKRLNDRLSMLRSIVPK
Sbjct: 147 MESDQSKS---FSVGYCGGETNKKKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPK 206

Query: 198 ISKMDRTAILADAIEYMKELLEKIGNLQ---REVDGSNPRTNS-----LNNTKPSELVAR 257
           ISKMDRT+IL DAI+YMKELL+KI  LQ   +E+  SN   +S     L +   +E + R
Sbjct: 207 ISKMDRTSILGDAIDYMKELLDKINKLQDEEQELGNSNNSHHSKLFGDLKDLNANEPLVR 266

Query: 258 NSPKFEVESRMGKTRIEICCAAKPGLILSTVNTIEALGLEIQQCVISSFNDFALQATCSS 317
           NSPKFE++ R   TR++ICC+ KPGL+LSTVNT+E LGLEI+QCVIS F+DF+LQA+C S
Sbjct: 267 NSPKFEIDRRDEDTRVDICCSPKPGLLLSTVNTLETLGLEIEQCVISCFSDFSLQASC-S 326

Query: 318 QEMKQRIELKPGEVKEALFRNAGYGGSCL 339
           +  +QR  +   ++K+ALFRNAGYGGSCL
Sbjct: 327 EGAEQRDFITSEDIKQALFRNAGYGGSCL 351

[Close]

BLAST of CmaCh05G005630 vs. TAIR 10
Match: AT5G10570.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 195.7 bits (496), Expect = 6.1e-50
Identity = 143/325 (44.00%), Postives = 181/325 (55.69%), Query Frame = 0


Query: 28  ISDFCWNAWAFDY-CFD---QSSMNF-HPNSSSEPLSAQNLDEFYHPLGNEFSVPGMADS 87
           I  F  N W FDY CF+   Q   N  HP+SSS              L N  S P     
Sbjct: 26  IDQFVPNDWNFDYLCFNNLLQEDDNIDHPSSSS--------------LMNLISQP----- 85

Query: 88  AYAAMEVEAAPLPFQAERPNAEREGEGEGEEEEELGFLADEIQN-------MEVVQVQSA 147
                     PL  Q  +P++            +  FL D I +       +     ++ 
Sbjct: 86  ---------PPLLHQPPQPSSPLYDSPPLSSAFDYPFLEDIIHSSYSPPPLILPASQENT 145

Query: 148 CKMEPNQSPDLPVFNIGTCSSIERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIV 207
               P         +IG      +K  +KKL+GQPSKNLMAERRRRKRLNDRLS+LRSIV
Sbjct: 146 NNYSPLMEESKSFISIG---ETNKKRSNKKLEGQPSKNLMAERRRRKRLNDRLSLLRSIV 205

Query: 208 PKISKMDRTAILADAIEYMKELLEKIGNLQREVD--GSNPRTNSLNNTKPSELVARNSPK 267
           PKI+KMDRT+IL DAI+YMKELL+KI  LQ +    GSN   ++L     +E + RNS K
Sbjct: 206 PKITKMDRTSILGDAIDYMKELLDKINKLQEDEQELGSNSHLSTLIT---NESMVRNSLK 265

Query: 268 FEVESRMGKTRIEICCAAKPGLILSTVNTIEALGLEIQQCVISSFNDFALQATCSSQEMK 327
           FEV+ R   T I+ICC  KPGL++STV+T+E LGLEI+QCVIS F+DF+LQA+C  +  +
Sbjct: 266 FEVDQREVNTHIDICCPTKPGLVVSTVSTLETLGLEIEQCVISCFSDFSLQASC-FEVGE 315

Query: 328 QRIELKPGEVKEALFRNAGYGGSCL 339
           QR  +     K+AL RNAGYGG CL
Sbjct: 326 QRYMVTSEATKQALIRNAGYGGRCL 315

[Close]

BLAST of CmaCh05G005630 vs. TAIR 10
Match: AT1G12860.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 144.8 bits (364), Expect = 1.2e-34
Identity = 87/194 (44.85%), Postives = 123/194 (63.40%), Query Frame = 0


Query: 161 NRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELLEK 220
           N   K +G P+KNLMAERRRRK+LNDRL MLRS+VPKISKMDR +IL DAI+Y+KELL++
Sbjct: 256 NNKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQR 315

Query: 221 IGNLQREVDGSNPRTNSLNNTKPS----------ELVARNS--------PKFEVESRMGK 280
           I +L  E++ + P ++SL+   P+          EL   +S        P+ EV  R GK
Sbjct: 316 INDLHTELESTPPSSSSLHPLTPTPQTLSYRVKEELCPSSSLPSPKGQQPRVEVRLREGK 375

Query: 281 -TRIEICCAAKPGLILSTVNTIEALGLEIQQCVISSFNDFALQATCSSQEMKQRIELKPG 336
              I + C  +PGL+LST+  ++ LGL++QQ VIS FN FAL     +++ ++  ++ P 
Sbjct: 376 AVNIHMFCGRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALD-VFRAEQCQEDHDVLPE 435

[Close]

BLAST of CmaCh05G005630 vs. TAIR 10
Match: AT3G26744.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 139.8 bits (351), Expect = 4.0e-33
Identity = 88/194 (45.36%), Postives = 122/194 (62.89%), Query Frame = 0


Query: 165 KLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELLEKIGNL 224
           K +G P+KNLMAERRRRK+LNDRL MLRS+VPKISKMDR +IL DAI+Y+KELL++I +L
Sbjct: 300 KKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDL 359

Query: 225 QREVD----GSNPRTNS----LNNTK------------PSELVARNSPKFEVESRMGKTR 284
             E++    GS P T+S    L  T             PS L +    +  VE R+ + R
Sbjct: 360 HNELESTPPGSLPPTSSSFHPLTPTPQTLSCRVKEELCPSSLPSPKGQQARVEVRLREGR 419

Query: 285 ---IEICCAAKPGLILSTVNTIEALGLEIQQCVISSFNDFALQATCSSQEMKQRIELKPG 336
              I + C  +PGL+L+T+  ++ LGL++QQ VIS FN FAL     +++ ++  E+ P 
Sbjct: 420 AVNIHMFCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFALD-VFRAEQCQEGQEILPD 479

[Close]

BLAST of CmaCh05G005630 vs. TAIR 10
Match: AT3G26744.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 139.8 bits (351), Expect = 4.0e-33
Identity = 88/194 (45.36%), Postives = 122/194 (62.89%), Query Frame = 0


Query: 165 KLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELLEKIGNL 224
           K +G P+KNLMAERRRRK+LNDRL MLRS+VPKISKMDR +IL DAI+Y+KELL++I +L
Sbjct: 300 KKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDL 359

Query: 225 QREVD----GSNPRTNS----LNNTK------------PSELVARNSPKFEVESRMGKTR 284
             E++    GS P T+S    L  T             PS L +    +  VE R+ + R
Sbjct: 360 HNELESTPPGSLPPTSSSFHPLTPTPQTLSCRVKEELCPSSLPSPKGQQARVEVRLREGR 419

Query: 285 ---IEICCAAKPGLILSTVNTIEALGLEIQQCVISSFNDFALQATCSSQEMKQRIELKPG 336
              I + C  +PGL+L+T+  ++ LGL++QQ VIS FN FAL     +++ ++  E+ P 
Sbjct: 420 AVNIHMFCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFALD-VFRAEQCQEGQEILPD 479

The following BLAST results are available for this feature:

BLAST of CmaCh05G005630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSL1	4.1e-59	61.24	Transcription factor bHLH93 OS=Arabidopsis thaliana OX=3702 GN=BHLH93 PE=1 SV=1	[more]
Q10S44	8.6e-49	39.04	Transcription factor BHLH3 OS=Oryza sativa subsp. japonica OX=39947 GN=BHLH3 PE=...	[more]
Q9LXA9	8.6e-49	44.00	Transcription factor bHLH61 OS=Arabidopsis thaliana OX=3702 GN=BHLH61 PE=2 SV=1	[more]
Q336V8	6.4e-44	51.47	Basic helix-loop-helix protein 004 OS=Oryza sativa subsp. japonica OX=39947 GN=B...	[more]
Q9LPW3	1.7e-33	44.85	Transcription factor SCREAM2 OS=Arabidopsis thaliana OX=3702 GN=SCRM2 PE=1 SV=1	[more]

BLAST of CmaCh05G005630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65640.1	2.9e-60	61.24	beta HLH protein 93	[more]
AT5G10570.1	6.1e-50	44.00	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G12860.1	1.2e-34	44.85	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G26744.1	4.0e-33	45.36	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G26744.2	4.0e-33	45.36	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 207..227
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..182
None	No IPR available	PANTHER	PTHR31945:SF116	SUBFAMILY NOT NAMED	coord: 2..338
None	No IPR available	PANTHER	PTHR31945	TRANSCRIPTION FACTOR SCREAM2-RELATED	coord: 2..338
None	No IPR available	CDD	cd04873	ACT_UUR-ACR-like	coord: 263..304 e-value: 0.00120172 score: 35.2165
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 174..223 e-value: 1.3E-11 score: 54.6
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 174..217 e-value: 6.1E-10 score: 38.9
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 168..217 score: 15.154443
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 156..232 e-value: 8.3E-14 score: 53.2
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 172..235

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G005630.1	CmaCh05G005630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034220	ion transmembrane transport
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0015276	ligand-gated ion channel activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0038023	signaling receptor activity