CmaCh05G003710 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh05G003710
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionSerine-rich protein-like protein
LocationCma_Chr05: 1646352 .. 1646897 (+)
RNA-Seq ExpressionCmaCh05G003710
SyntenyCmaCh05G003710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGGAAACAAGCGGACCTGTTCTCCGGCCACTTCCCGCCGCCGGCCGATTCGCCGCATCAAAGAGCTTCGGCTTCTCTTCCACATCCTCATCCTTTTTCCACAACCACGAGCGAAACGCTTCACCTACTCGAGTCAACATTTCTTCCAGTCCCCTGTCTCGCTCTGTTCGATTTTCAATTGATCACCGGTCCGGCTCTCCAAGTCGGTCCATCACACTCTCCAACCGGAACTCGCCGGTTTCTCTACCGAAAAAGACGTGCACTTGTTCGCCGACGACTCACCCTGGTTCCTTCCGGTGCAGTCTGCATAGAAATTCAGGCAATGGCGGACACCATCAGACGTATTCATCGAGCGGGTTAAACATGCGGAGGTCTGCGATGAAGAACTCGCTCGTAAGAATCGGCGGCGTTGAGGGAGACTGGGTGAAGCGAGCGTTGACTGCTCTGATACGACCTTCTTCACACCAGCTGAGACGGCGAGCCAATTTCCGGCCACGCCCCAGCCGGCTTTCGGTCGTGTCCAAGGCCGATGATCTGTAA

mRNA sequence

ATGAAGAAGGAAACAAGCGGACCTGTTCTCCGGCCACTTCCCGCCGCCGGCCGATTCGCCGCATCAAAGAGCTTCGGCTTCTCTTCCACATCCTCATCCTTTTTCCACAACCACGAGCGAAACGCTTCACCTACTCGAGTCAACATTTCTTCCAGTCCCCTGTCTCGCTCTGTTCGATTTTCAATTGATCACCGGTCCGGCTCTCCAAGTCGGTCCATCACACTCTCCAACCGGAACTCGCCGGTTTCTCTACCGAAAAAGACGTGCACTTGTTCGCCGACGACTCACCCTGGTTCCTTCCGGTGCAGTCTGCATAGAAATTCAGGCAATGGCGGACACCATCAGACGTATTCATCGAGCGGGTTAAACATGCGGAGGTCTGCGATGAAGAACTCGCTCGTAAGAATCGGCGGCGTTGAGGGAGACTGGGTGAAGCGAGCGTTGACTGCTCTGATACGACCTTCTTCACACCAGCTGAGACGGCGAGCCAATTTCCGGCCACGCCCCAGCCGGCTTTCGGTCGTGTCCAAGGCCGATGATCTGTAA

Coding sequence (CDS)

ATGAAGAAGGAAACAAGCGGACCTGTTCTCCGGCCACTTCCCGCCGCCGGCCGATTCGCCGCATCAAAGAGCTTCGGCTTCTCTTCCACATCCTCATCCTTTTTCCACAACCACGAGCGAAACGCTTCACCTACTCGAGTCAACATTTCTTCCAGTCCCCTGTCTCGCTCTGTTCGATTTTCAATTGATCACCGGTCCGGCTCTCCAAGTCGGTCCATCACACTCTCCAACCGGAACTCGCCGGTTTCTCTACCGAAAAAGACGTGCACTTGTTCGCCGACGACTCACCCTGGTTCCTTCCGGTGCAGTCTGCATAGAAATTCAGGCAATGGCGGACACCATCAGACGTATTCATCGAGCGGGTTAAACATGCGGAGGTCTGCGATGAAGAACTCGCTCGTAAGAATCGGCGGCGTTGAGGGAGACTGGGTGAAGCGAGCGTTGACTGCTCTGATACGACCTTCTTCACACCAGCTGAGACGGCGAGCCAATTTCCGGCCACGCCCCAGCCGGCTTTCGGTCGTGTCCAAGGCCGATGATCTGTAA

Protein sequence

MKKETSGPVLRPLPAAGRFAASKSFGFSSTSSSFFHNHERNASPTRVNISSSPLSRSVRFSIDHRSGSPSRSITLSNRNSPVSLPKKTCTCSPTTHPGSFRCSLHRNSGNGGHHQTYSSSGLNMRRSAMKNSLVRIGGVEGDWVKRALTALIRPSSHQLRRRANFRPRPSRLSVVSKADDL
Homology
BLAST of CmaCh05G003710 vs. TAIR 10
Match: AT5G11090.1 (serine-rich protein-related )

HSP 1 Score: 182.6 bits (462), Expect = 2.9e-46
Identity = 110/210 (52.38%), Postives = 145/210 (69.05%), Query Frame = 0

Query: 2   KKETSGPVLRPLPAAGR----------------FAASKSFGFSSTSSSFF---------H 61
           + +++GPVLR    +GR                FA+S S  FSS SS+FF         H
Sbjct: 7   RTKSNGPVLRSQSPSGRFCGGYSRAVPSSSSSAFASSTSSSFSSPSSAFFSNHRHHESNH 66

Query: 62  NHERNASPTRVNI-SSSPLSRSVRFSIDHRSGSP-SRSITLSNRNSPVSLPK--KTCTCS 121
           +H R+ASPTRVN+ ++ P+S+S R+S+D RS SP ++SI++S    P    K  + C CS
Sbjct: 67  SHHRSASPTRVNLYTAQPMSQSFRYSLDSRSISPTNKSISVSKNQPPSHNHKISRRCMCS 126

Query: 122 PTTHPGSFRCSLHRNSGN--GGHHQTYSSSGLNMRRSAMKNSLVRIGGVEGDWVKRALTA 181
           PTTHPGSFRCSLH+N  N  G    +Y+++GLNMRRSAM NSLVRIGGVEG+WV+RALT 
Sbjct: 127 PTTHPGSFRCSLHKNVANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVEGEWVRRALTT 186

BLAST of CmaCh05G003710 vs. TAIR 10
Match: AT5G25280.1 (serine-rich protein-related )

HSP 1 Score: 179.9 bits (455), Expect = 1.9e-45
Identity = 104/183 (56.83%), Postives = 138/183 (75.41%), Query Frame = 0

Query: 14  PAAGRFAASKSFGFSSTSSSFF-------HNHERNASPTRVNI-SSSPLSRSVRFSIDHR 73
           P++  FA+S S  FSS S++FF       H+  R+ASPTRVN+ +S+P+++S R+SID+R
Sbjct: 39  PSSSGFASSTSSSFSSPSTAFFSSHNQNNHHQHRSASPTRVNLFTSAPMTQSFRYSIDNR 98

Query: 74  SGSPSRSITLSNRNSP-----VSLPKKTCTCSPTTHPGSFRCSLHRNSGN--GGHHQTYS 133
           S SP+RSI +S+ N P     +   ++ C CSPTTHPGSFRCSLH+N  N  G    +Y+
Sbjct: 99  SISPNRSIAVSS-NKPSNHHKIPDSRRRCMCSPTTHPGSFRCSLHKNVANPHGQGTASYT 158

Query: 134 SSGLNMRRSAMKNSLVRIGGVEGDWVKRALTALIRPSSHQLRRRANFRPRPSRLSVVSKA 182
           ++GLNMRRSAM NSLVRIGGVEG+WV+RALT LIRPSSHQL+RR+ + PR SRL+ +SKA
Sbjct: 159 TNGLNMRRSAMTNSLVRIGGVEGEWVRRALTTLIRPSSHQLKRRSAYEPRRSRLASMSKA 218

BLAST of CmaCh05G003710 vs. TAIR 10
Match: AT5G25280.2 (serine-rich protein-related )

HSP 1 Score: 179.9 bits (455), Expect = 1.9e-45
Identity = 104/183 (56.83%), Postives = 138/183 (75.41%), Query Frame = 0

Query: 14  PAAGRFAASKSFGFSSTSSSFF-------HNHERNASPTRVNI-SSSPLSRSVRFSIDHR 73
           P++  FA+S S  FSS S++FF       H+  R+ASPTRVN+ +S+P+++S R+SID+R
Sbjct: 39  PSSSGFASSTSSSFSSPSTAFFSSHNQNNHHQHRSASPTRVNLFTSAPMTQSFRYSIDNR 98

Query: 74  SGSPSRSITLSNRNSP-----VSLPKKTCTCSPTTHPGSFRCSLHRNSGN--GGHHQTYS 133
           S SP+RSI +S+ N P     +   ++ C CSPTTHPGSFRCSLH+N  N  G    +Y+
Sbjct: 99  SISPNRSIAVSS-NKPSNHHKIPDSRRRCMCSPTTHPGSFRCSLHKNVANPHGQGTASYT 158

Query: 134 SSGLNMRRSAMKNSLVRIGGVEGDWVKRALTALIRPSSHQLRRRANFRPRPSRLSVVSKA 182
           ++GLNMRRSAM NSLVRIGGVEG+WV+RALT LIRPSSHQL+RR+ + PR SRL+ +SKA
Sbjct: 159 TNGLNMRRSAMTNSLVRIGGVEGEWVRRALTTLIRPSSHQLKRRSAYEPRRSRLASMSKA 218

BLAST of CmaCh05G003710 vs. TAIR 10
Match: AT5G20370.1 (serine-rich protein-related )

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-14
Identity = 65/183 (35.52%), Postives = 86/183 (46.99%), Query Frame = 0

Query: 5   TSGPVLRPLPAAGRFAASKSFGFSSTSSSFFHNHERNASPTRVNISSSPLSRSVRFSIDH 64
           +S  VLRPL ++ R              +  H+H R  SP+  N     L+  ++F    
Sbjct: 7   SSRSVLRPLSSSQRL------------HNNHHHHHRQRSPSPCN---KNLNLRLKFYSPG 66

Query: 65  RSGSPSRSITLSNRNSPVSLPKKTCTCSPTTHPGSFRCSLHR---------------NSG 124
               PS     SN  +     K+ C CSPTTHPGSFRCS HR                  
Sbjct: 67  SIPKPSVVTVSSNHQT-----KRKCLCSPTTHPGSFRCSFHRRLEHEKSKTLASSTVKRN 126

Query: 125 NGGHHQTYSSSGLNMRRSAMKNSLVRIGGVEGDWVKRALTA-LIRPSSHQLRRRANFRPR 172
           N G +    + GLN+R+ A+ NSL +IG VE +  +R+L A L +PSS    RR  FRPR
Sbjct: 127 NRGDNTIRVNVGLNLRKLALMNSLAKIGSVEAERFRRSLAANLAKPSSLHSHRRPEFRPR 169

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT5G11090.12.9e-4652.38serine-rich protein-related [more]
AT5G25280.11.9e-4556.83serine-rich protein-related [more]
AT5G25280.21.9e-4556.83serine-rich protein-related [more]
AT5G20370.11.0e-1435.52serine-rich protein-related [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..87
NoneNo IPR availablePANTHERPTHR33132OSJNBB0118P14.9 PROTEINcoord: 16..179
NoneNo IPR availablePANTHERPTHR33132:SF80BNACNNG20100D PROTEINcoord: 16..179

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G003710.1CmaCh05G003710.1mRNA