CmaCh04G024870 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G024870
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr04: 17060149 .. 17064748 (+)
RNA-Seq ExpressionCmaCh04G024870
SyntenyCmaCh04G024870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAAGCCAAAACGATATACGAATGAAGTGGTAAATGCGAAAGAAAGAGAAAATAGACTGAAAGTTTGTTGTAAATGTTGGTGGCTGACTGATGATTTAGTATGTTATGATCATTTTTATAGTGTAGATGGAAGGAAGGTTAGTTTTTAATGTAGAAGAGGTACATCTGTTGCATTTCACATGATCCATGGCCATGTTTTGAAGGTTCACATGTTTTGGCAAGTAAACTCAACATCTTCAGAAACTTTAAATGAACTGGGGCACTTGATCTTCTTATATGTACGAAGGTACATTTTTTTAGTCTTATAGATCAAAATTTGAATTGCTGGATCTTGTAAAGCTATGAAGACGAGACATTTTGAAATTTAAGAGCACCATCTCGTCCTGAGATGACATGGGGGTTCATCTTTTCTCTTCATATATTGCAATGGTAGTTGGATTCATTTATAATCAATGTGCTTTCTGGCTGTGATAAATATTGCTTTTCACACAGGTTGAGGAAGGTTCATATTCATTTTCGGTTTATTAATTAGTCGGTCACTTTCTAGCAACATATGATGGGGAAATCCTGGATTTATTTACTTTTATAGATCGTTTATATAATATTTGGTAGTACTTGTGAGTAATTTAAGATGCTTGAATTTTTATGCTTATTTGCCCACAATGGAAAAAGTGTTTCTGAGGCAAGCATTTAATTGTTTTATCTAAATAAAATATGCTATGCCCCATTTATTTGTTTGTTTGTTTGTTTTTTTTTGAATTAAATGATGTTGCTGAATTTTATATTTGGTGGGTTTATTTTTTGAGTTTAACCGTGTGAGCGTTATAATTTGAACTTCTAATCTTTTGGTTTAACATGCATTATCTCAAGCAGTTGAGTTATGTTCATGTTAATTTGTAACGGCTCAAGCCCATTATTAGCAGATTGTCCTCTTTGGGTTTTCCCTTTCGGATTTTCCCTCAAGTTTTTTAAAACGTGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTCTTCTCCCCAACCGATGTGGGATCTCACATAATTATTTGGTGAGTATTTTTTAGAACAATATTCATTTTTGAATTTTATAGTTTAGGAAGTAAAACACATTGAATACATCTCTACTTTCCATTGATTCCTTTCGTATTCTTGTTTATGGATATTTTTTCTTCTTATTAAAGTCAAAAGTTCGGGTGAAGGTTATCTCAATTTTAGTTCATCAACCAAATGCACACTTGGTTCTCGAACACGTTCTATATCATCTTTGAAGGAAAGCATGGAAAATCTTTATAGTTAGGACATCTTGAGCTAGATTTGTGTCCAATCAAGGAGTATTGAAAAGATTATAGTCCCAAGTGAATGGGACATAGCCAAATTATTATTAGGGAATGTGTTGCTGGCTTTTATTTGCTAGACGACACAAGGAATTCACGTGCAGCAAGCAGGAGCTATTCAAATTTAAGAAACCCTCTGCCCTAAACGTGATGCTGAAGAAGCCCTTTGCATTGAATTAGCTTCTGCTACATTTGTCAGTTTCGGATTCATCAATACTTCCTATAAAGGTTAGAGGAGCAAGTCTTAGTTGAAGCTTTGGTTTAATTTCTTGTTTGTTTGTGGTTCTTATGTTGAGTTACTTTCAATTTTCTCCACTTGCTCTGTGTATGTGGGCGAATTTTTGGTACGGGTGAGAATTTGAACTTTAGTTACCTTTACGACCAAGGTCATGTCTTTTTATACCGCTTCTATCCATGTGTCTAGAGCTACTCGGTCAATTAGAAACACAAATTTAAGGCGATTTTTTCTATTTGCTCTATGTTTCTAAGCTTGTAGCCTTATTGATGTAACCCACTAAATAAAAGGTTTGTTCGGGATGAACATCTAATTCTCTCTAAGGTTTTTAATATTAGAAATCGAGCTTTCATTGAAATATGTAAAAGAATGTTCAAGTTATTCAATAAAAAGATTCATCAAAAGGAGTTTCGAACACTAATTACAAGAACTAACTCCAATATAAATGAATGAAATTAAGATAGATAAAAGATCGATTGATGGATGCCTATTATAACAAATTTTTACATCTCATTTTCAAATCTTCCGAAACTCTCTACAAATTTTGTTCTTCTAGTGTAAACTGGTGAAAAAACGAGCATCTCTTCCTCTATCTAGAAAATGAAGCTTATTGATAGTGTCGATCAACCTATCATACAGATGTCCATATGCGTTAAACTTTAAATTTACGAGAAGTAGGGCAAGATTTTAGATAATACATTGGAATAATTGTTCGGTGACTTAAGTAAATACTTTTGCAAACTATGACTGGTTGAAACGTTAGGTTGTTACAACTTATTTGAATTATCATTTTTTAATGTCTAAATGTTCTCAGGGTTACTATCAAACAAATATAATATTTGCATAAAAATATTCTCTCATTTCATAATCACTGTGCACAAAATGTACGAATGAATCCGTTTTTAATTTCGTTCGTAGAACCCTAGATGCTAATGAAGTATAAAATCGTGAACAAGGACATTTTATATTAAAAAGTGGGATTTAAATGTATAATTGTTCAACCGTCAGTTGAAATGACGATTCACCTTTTTCTAAGTAGTAGAGAAGAGGATCGAAATATGACACTTAAAAATTAGAGATTTGACAACATATTTTTTTTTATATTTTTCGTGAGACAGATAGAATATGATGTGGGACTTTTTATCTGTATTGCATAACAACTCATTTAGTGATGTTGGGTAATCAATGTTTATCCAATAAATTTTATGGAAGGCGACTTGAAGATGGAAATATTTCTCTTGAAGAACGAGAAATAGGTGGAACGAGACTGTAGCTATGAATTGTGAAACGTGTCGAGCGTTATCTCGTTCTTCGGATTCTGACTTTTCCAGCCGAAACTTATCTTTTCTTAATTTGGAGATTAGGAGCTATCCGAAATCATACTGATTTTTCGGCTACGTCTGGGCTTGGGGATTACGGCCAGAGTATTTGATCTTTGATCTTCCAATTTCAGCTCCTTTGATCTGTTGTTTCAGTTCCCAAAAGCTTGGCCGGATTCCGCTCCGACTCCGGCAATTTCGGATTTAGCATGGTGTTTTCGAGTTCATTAGTTATAGAGTAAGTGAGCTGAAATTTGATTTACTTATTTTCCAACATTGTGGAAAGTTGAATGTTTAGCTGAGAAATGAAGAACAAATTAACTTTCCAATTCGATTATTTTCTTTTTGCATTACAATCACTCGATTTGAACTTCCTCTGCAGATGAACTCTCCGTACCTGCTTTTGTTTGTCATTTTGATTGCTAACTATGAACCTCTTTCCTTCTATTTGAGCTTCTTTTCTCAACTTCTGCCTCTTATCATTGTAATTTACAAGCATGTCAGTGTACACTGGTTTGCCCTCTCTCGAAATTCAGCTTCTCTGAATGATAATCTCCTATTCATTGAACGTTACTGTCTGACCTTCGGATCATCAAGTTGAACTAGTGTTTGTTTTTTAATTTCCAGTTTTTTCAGCATAGCTTTACCTTTTGGGAATTTACAAATTTGCTCAATTGTTCAGTGAAATGGTAATGGTTTGATCAAAATGTTGAATCACTCAGTGTGTCGAAATGTTACTTGAGTTTCTTTAATGGAGTGAAGCAATTCATAAGGTGAAGTGAAATCATAATCCAAAGTATAAGAAATAATGGCCCAAGGGGCCACCAACCATTGCACGCAGACTGTCCAAAAAGAAAAAGTGAGCTGGTTTGTGTTCATAGCAACTGGGCCATGGAAGCCAGGCTTCATAATGAGCATTTTCAGACACATTCAGATATGAATTTAGTAAAAATATTGGATGAACAGGGTAATTTTAATTGATTAGACCATGCAAGAATCTGGTGCTAAAGCATTATAAATATGAGTCGGAAGGAGTTTGTTGAGACATGTTTACTACATATTATCATAGTTGTATGTGATGCTATGCGGTTTGCAATGCTAGAAAATATGACAGTATATACTTTCTTTTGGTACAAGGATACTACTATCTTTTAGAAATGGGCTTTGGAAATATACAGTGCATGACATATACTTATGTTTTTTCATGGAGGCAGACCTTGTAAGAACTCACATAGAAGACATGTTCAGATCCAAAGAGTTTTCATTCTATTATTTTCTTGATTATGCTGATCTTCCCCTTTCATTTTGTAAATTTTAATTTTTCATCCTTTCATCAGGGAAATCATTTTGTTCTTTGGTGTAGAATGCTAGCTATGCTTTTAGGATTTTATTGTTTTAATTTGAAAGTAAATGTCCGTGGAAATGATTGGGGTCATGACAAGATCTAATATAATAAACTGGGAAATAAAATGGTCTGGTAAAATGTATAGCATTACATTGCTTGTTATTCAACCTCAGACTGATTGAAAGCTTTCTCTGAACTCTTGGTCATCACTTACACTGGTAACACCATCGTATTTGTTTCACATTGTTTCAAGAATTCAGTGGATAAACCATACTCTTTAGTTCGTTCATACGATTTAATTTATCTTTTAGTGATTTATTTTATTCTTTTTGTTTGATTCAACAAGATAA

mRNA sequence

ATGCAAAAGCCAAAACGATATACGAATGAAGTGGTAAATGCGAAAGAAAGAGAAAATAGACTGAAAGTTTGTTGTAAATGTTGGTGGCTGACTGATGATTTAGTATGTTATGATCATTTTTATAGTGTAGATGGAAGGAAGGTTCACATGTTTTGGCAAGTAAACTCAACATCTTCAGAAACTTTAAATGAACTGGGGCACTTGATCTTCTTATATGTACGAAGTTTCGGATTCATCAATACTTCCTATAAAGTTCCCAAAAGCTTGGCCGGATTCCGCTCCGACTCCGGCAATTTCGGATTTAGCATGGTGTTTTCGAGTTCATTAGTTATAGAATAA

Coding sequence (CDS)

ATGCAAAAGCCAAAACGATATACGAATGAAGTGGTAAATGCGAAAGAAAGAGAAAATAGACTGAAAGTTTGTTGTAAATGTTGGTGGCTGACTGATGATTTAGTATGTTATGATCATTTTTATAGTGTAGATGGAAGGAAGGTTCACATGTTTTGGCAAGTAAACTCAACATCTTCAGAAACTTTAAATGAACTGGGGCACTTGATCTTCTTATATGTACGAAGTTTCGGATTCATCAATACTTCCTATAAAGTTCCCAAAAGCTTGGCCGGATTCCGCTCCGACTCCGGCAATTTCGGATTTAGCATGGTGTTTTCGAGTTCATTAGTTATAGAATAA

Protein sequence

MQKPKRYTNEVVNAKERENRLKVCCKCWWLTDDLVCYDHFYSVDGRKVHMFWQVNSTSSETLNELGHLIFLYVRSFGFINTSYKVPKSLAGFRSDSGNFGFSMVFSSSLVIE
Homology
[Close]
BLAST of CmaCh04G024870 vs. NCBI nr
Match: KAG6602226.1 (hypothetical protein SDJN03_07459, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-20
Identity = 61/69 (88.41%), Postives = 61/69 (88.41%), Query Frame = 0 

Query: 47  KVHMFWQVNSTSSETLNELGHLIFLYVRSFGFINTSYK---VPKSLAGFRSDSGNFGFSM 106
           KVHMFWQVNSTSSETLNEL HLI LYVRSF FINTSYK   V KSLAG RSDSGNFGFSM
Sbjct: 8   KVHMFWQVNSTSSETLNELWHLI-LYVRSFRFINTSYKVYVVLKSLAGLRSDSGNFGFSM 67

Query: 107 VFSSSLVIE 113
           VFSSSLVIE
Sbjct: 68  VFSSSLVIE 75

The following BLAST results are available for this feature:
BLAST of CmaCh04G024870 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G024870 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G024870 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6602226.11.2e-2088.41hypothetical protein SDJN03_07459, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh04G024870 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G024870.1CmaCh04G024870.1mRNA