CmaCh04G022570 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G022570
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionGRIP and coiled-coil domain-containing protein
LocationCma_Chr04: 15771601 .. 15775285 (-)
RNA-Seq ExpressionCmaCh04G022570
SyntenyCmaCh04G022570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTGAATAAAATATCATATGAAATCGAGGAGTCTCTTAACGCGTTCAGCTCTCCGAATTCGAAAGGGAGAAATTTGACCAAATTAATATCTGGATAGAGAATACATTTTCCTCTTTGATCATTGAAGAGAAACCACAGTTCGTCAAAAGCAGCGATCGTAATCGGTGGCTATGGCTCGAGCAGGTGGTCGGAGCAGGAATGGGGATGGGAATGGGAATGGGAATGAATCGATGGTTGTAGGGTTTCTGAAAACGGCGTTCAGATTCTTGAAGATGGCGGAGTTTGAGATACTTTTCGTTCTCTTCTTCATTGTAGCTTTTATTATCTTCAAAGATCTCGTAAGTTTCTCCGTTATTCGTCTGTTCTTATTTTTGCTCTGTCTTGAGGCTTGTTGTCTCAATTTGATTGGATCCGATGATATAGATCGAAATGATAATTGTAGAGAGCCATCTTTGCTGTTGATTCGTTGTTTTGGGATCTTGTTATCAGAAGTTTCGTGTATGTTAGTTTACTTTGACCCTCGAATTAGATTTAATCTGAGCAGCTGTTAATCTTCTTTCCCTTTTTTTTTCAATGTATCTAGGTGCTGGTTTAGTCTAAACTTGTGAAAACATTAGAACTTTTCGCTAATTTCAGAATGACAAACTCAGGTTTTAGGGGAAAAAAAACTGCTGTTTTTTGGTTTTCAAAATTTGGCTAGTAGGTAAGAGAAATATTTTTGAAAGTAGATTAGAAAACAAGGAAGAAATCTATAGATTAGAAGACAAGGAAGATATTTATGTATGTATGATGTTTATAAATAGTAAACAAATCAAAAAAGTTATCATATAGTCCCTTAGATATTCCACTAAACACACAAGGAGTTAAAGAACTTGAAAAATTTCCTATATGTAATTGTCCCCAATAGAAAAATCTGCGAGATCCGGGTCACAATTTTGTATAGGCTATGGTTGAATTGGCTACTAATGTTGGCTTGTGAGCTTTGGTACTCGAACCATTGAATATTTAGGATTGCCTCTTGGCAGCAACCTTTAGATTTGTAAGTTCCAAAATTTTGAAATGGAAGAAGTGGCTGTTTTTGCAACCTCACTTTGGCCAAGTTGATGGATACAAATATTCCTACCTATTTTTCTTTTCTTTTCTTTTCCTTTCCTGGTTTTTTAGAATTCTTCCCATTGTGACTAAGAACTTGGAGAGGTCTATTAGAAATTTTGCACAGTAAGTAACAGATTGTAATTATGATAGCCACGACTGCATTAGATGGAACATGGCTGTTTCTGTTGGTCGAGAACGGTCTCATGTCAGGCTCATTAGAAAGCAATAGTGAGCTGGCCTATATTAAGAAATAGAATCATTCGAAGTGTCAAGAGATCCTTGGGGTTGGGAAATAGGTTGTTGTTGCAACAGTCATGGTAAAAGACTAGTTTTATATTGCTAGACATGGCTTTCTTATTGGAGGCTGACTTTCAAGTGGATAGTAGTTCTTTGGTCAAATTCTGAGCAGATTTCTATAAGGGAAACTGTACATCAAGTCTATGCTTCTCTAGGCGTAGGCTATATTTCATTGTGGAGAACGAACTGTTAAATGTTGGTGGTTCTTAGGTTTGTAAGATCGAAGGGTGGAATTGCAAGAGATGAAGGGAGAAGGCAAGATATGAAGTAGAGGAATGATATATTGAAGAGATAAATGATTTATATGTTCGTGTCCGCAATAGGACGAAAAATATAAGTCTAGACACACAAAGTATTCACAATACATAAGGAAAAGCTTTGTACAAAAGGAAATAAAATACGTTTAATGAATAAGAGAGTGAACCCTGCTGTACTTCTATGATCTCCTTTGGATAGAGTTTTGTCATAGTTTGATGTCTTGTTCATCTGTCTCTTCTTTTTGGCATTAATGAAACCATTTTCTCTTGCCAAAAAGAACATTTGGAGAATCTAGACGTCTGCAGTAAAAGTTATTTTGGTGAAGCACTATATTTATGTACCACACTTAGAAATAATATATTCCGGCCTTTTGCTTGTCATTTTGTCACATATGTGCCATTATTTAGGAGTTCCATAGCTATATTGTTCGCTTGGGAGCACTTTCCTTCCCTAGCTCATTGCATATAATAGGGCAGCTTCTTGAAATGTGAACATATTGATGACTGAAAGCAGTTCTTAGGATTCAGAATGAGGTCATATTGTAGAATGGATTCTGGTTCATAAATTCAGGAAAAGGGAAATTGATTCTCTCCTTCTTAGTTCCAATAAGCTTGTATAAATTTGGTTGCTTCTTTTCCGTTCTGAGGTGTAATGAGTTTGAGATAGCGAGATGCATGGCATTTGTACGATTATGGAAAAAACCTTCATATCTTGGATTTTCTTGAATAAATTGTTGTAGATAGTTCTTGTAACAACTCAAACCCATTGTTAGTAGATATTGTCCACTTTGGTCCGTTATGTAGTGCCGTTAGCCTCACGGTTTTAAAACGCGTCTACTAGGAGAGGTTTCCACACTTTTATAAAGAATGTTTTGTTCCCCTCTCCAACCGATATGGGATCTCACAATCCACCCTCCTTCGAGACCTAGCGTCCTTGCTGGCACACCATCCGATGTCCGGCTCTAATACCATTTGTAACAACTCAATCCCACCGACAGTAAATATTGTCTGCTTTACCCCATTATGTATCGCCGTCAATCTCACGGTTTTAAAACGTGTCGGCTAGGGAGAGGTTTCCGGCTAGGGAGAGGTTTCCACACCCTTATAAATAATATTTTGTTCCCCTCTCCAACCAATGTGGGATCTCACAATTCTTGATGTTGTTTGGTACGTAGGCATCAAAATTGAAGACTAATTTCATTATTTATGTGTCTTGTGGGCTGACTCTCCCTTTTCAACAGCAGTCAGATAGATTCATAGTGCGCTTGGTGCAGTAGTTAGTTAGTTGAGTGTCGGAATGCTCATGTTGAGTTTGGCCCTTTAAGTAAAACTTTCATATTTGATCTTTAATTCTCATACTCACGTCGTTTCATTCCTAACTTTCTAGTTTTCTATTTTAAAAGCTTTTTTTTTTCTTTTTTAACCTTTGGAAGAAATGAGCAAACACCCTATAATACTCTCTAGTCTAGATTTTATTTTAGCTCATAAATTTTTTATAAAAAAAATATTTCTAGTCCTTGAAACTAATCTTTATAATAAATTATTTAGCTAAAACCTGACATCAACACATCCTTTGTTGTTTATTTGCCTTATCACTAGATCACGAACATTCTTATCTCGTTAATTATTCAGAGTATGATTACTGTTCGGTATCTATTTTTCTTAGTGTCTCCCTCTATTCATGTGCAAAAGTCAAGAGATTCTAATAATGTGGCAAACAATTTGCAGACATCAAGACCAGAATACAATCAGATCCTTGTAAAGAAGCCTGAGGGGTTTGATATGTGGCCATTCCCGTAAATTCTTTACCAATGCAACTGGCTTATACTGACAGCTTTATAGGTTTGTATCTTTTTATATTGATGTGCAGGATTGATGTTGAAATGTTTATTGACATGTACACGTTGTTATTGATGTTTTCGTAACTCAGAAAGTTTTTGAAGTATATACTGGTTTAAGAATACTGTGGAAGTGTCGAGAAAATGCAAGAAATGTGGAAGATATAAGTGATGCTAAAAGTGGTAAATGGTATCGAG

mRNA sequence

TCTGAATAAAATATCATATGAAATCGAGGAGTCTCTTAACGCGTTCAGCTCTCCGAATTCGAAAGGGAGAAATTTGACCAAATTAATATCTGGATAGAGAATACATTTTCCTCTTTGATCATTGAAGAGAAACCACAGTTCGTCAAAAGCAGCGATCGTAATCGGTGGCTATGGCTCGAGCAGGTGGTCGGAGCAGGAATGGGGATGGGAATGGGAATGGGAATGAATCGATGGTTGTAGGGTTTCTGAAAACGGCGTTCAGATTCTTGAAGATGGCGGAGTTTGAGATACTTTTCGTTCTCTTCTTCATTGTAGCTTTTATTATCTTCAAAGATCTCACATCAAGACCAGAATACAATCAGATCCTTGTAAAGAAGCCTGAGGGGTTTGATATGTGGCCATTCCCGTAAATTCTTTACCAATGCAACTGGCTTATACTGACAGCTTTATAGGTTTGTATCTTTTTATATTGATGTGCAGGATTGATGTTGAAATGTTTATTGACATGTACACGTTGTTATTGATGTTTTCGTAACTCAGAAAGTTTTTGAAGTATATACTGGTTTAAGAATACTGTGGAAGTGTCGAGAAAATGCAAGAAATGTGGAAGATATAAGTGATGCTAAAAGTGGTAAATGGTATCGAG

Coding sequence (CDS)

ATGGCTCGAGCAGGTGGTCGGAGCAGGAATGGGGATGGGAATGGGAATGGGAATGAATCGATGGTTGTAGGGTTTCTGAAAACGGCGTTCAGATTCTTGAAGATGGCGGAGTTTGAGATACTTTTCGTTCTCTTCTTCATTGTAGCTTTTATTATCTTCAAAGATCTCACATCAAGACCAGAATACAATCAGATCCTTGTAAAGAAGCCTGAGGGGTTTGATATGTGGCCATTCCCGTAA

Protein sequence

MARAGGRSRNGDGNGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRPEYNQILVKKPEGFDMWPFP
Homology
[Close]
BLAST of CmaCh04G022570 vs. ExPASy TrEMBL
Match: A0A6J1CIZ9 (uncharacterized protein LOC111011789 OS=Momordica charantia OX=3673 GN=LOC111011789 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.8e-25
Identity = 63/78 (80.77%), Postives = 67/78 (85.90%), Query Frame = 0 

Query: 1  MARAGGRSRNGDGNGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRP 60
          MAR GGRSR      NGN+S VVGFLK   RFLKMAEFEILF+LFF+VAFI+FKDLTSRP
Sbjct: 1  MARTGGRSR------NGNDSAVVGFLKAVLRFLKMAEFEILFILFFVVAFILFKDLTSRP 60

Query: 61 EYNQILVKKPEGFDMWPF 79
          EYNQILVKKPEGFDMWPF
Sbjct: 61 EYNQILVKKPEGFDMWPF 72

[Close]
BLAST of CmaCh04G022570 vs. ExPASy TrEMBL
Match: A0A6J1K0Z3 (uncharacterized protein LOC111489659 OS=Cucurbita maxima OX=3661 GN=LOC111489659 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.0e-24
Identity = 64/78 (82.05%), Postives = 66/78 (84.62%), Query Frame = 0 

Query: 1  MARAGGRSRNGDGNGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRP 60
          MA AGGRSR      +GNE    GFLKT FRFLKMAEFEILFVLFFIVAFI+FKDLTSRP
Sbjct: 1  MALAGGRSR------SGNEPSGGGFLKTVFRFLKMAEFEILFVLFFIVAFIVFKDLTSRP 60

Query: 61 EYNQILVKKPEGFDMWPF 79
          EYNQILVKKPEGFDMWPF
Sbjct: 61 EYNQILVKKPEGFDMWPF 72

[Close]
BLAST of CmaCh04G022570 vs. ExPASy TrEMBL
Match: A0A1S3CK24 (uncharacterized protein LOC103501353 OS=Cucumis melo OX=3656 GN=LOC103501353 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.8e-24
Identity = 63/78 (80.77%), Postives = 65/78 (83.33%), Query Frame = 0 

Query: 1  MARAGGRSRNGDGNGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRP 60
          MARA GRSRNG  +  G      GFLK  FRFLKMAEFEILFVLFFIVAFI+FKDLTSRP
Sbjct: 1  MARASGRSRNGSDSSGG------GFLKATFRFLKMAEFEILFVLFFIVAFIVFKDLTSRP 60

Query: 61 EYNQILVKKPEGFDMWPF 79
          EYNQILVKKPEGFDMWPF
Sbjct: 61 EYNQILVKKPEGFDMWPF 72

[Close]
BLAST of CmaCh04G022570 vs. ExPASy TrEMBL
Match: A0A6J1FE48 (uncharacterized protein LOC111444698 OS=Cucurbita moschata OX=3662 GN=LOC111444698 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.4e-23
Identity = 62/78 (79.49%), Postives = 64/78 (82.05%), Query Frame = 0 

Query: 1  MARAGGRSRNGDGNGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRP 60
          MARAGGRSR      +GNE    GFLK  FR LKM EFEILFVLFFIVAFI+FKDLTSRP
Sbjct: 1  MARAGGRSR------SGNEPSGGGFLKAVFRLLKMVEFEILFVLFFIVAFIVFKDLTSRP 60

Query: 61 EYNQILVKKPEGFDMWPF 79
          EYNQILVKKPEGFDMWPF
Sbjct: 61 EYNQILVKKPEGFDMWPF 72

[Close]
BLAST of CmaCh04G022570 vs. ExPASy TrEMBL
Match: A0A0A0KPT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G315390 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 7.5e-23
Identity = 62/78 (79.49%), Postives = 64/78 (82.05%), Query Frame = 0 

Query: 1  MARAGGRSRNGDGNGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRP 60
          MARA GR RNG  +  G      GFLK  FRFLKMAEFEILFVLFFIVAFI+FKDLTSRP
Sbjct: 1  MARATGRIRNGTDSSGG------GFLKATFRFLKMAEFEILFVLFFIVAFIVFKDLTSRP 60

Query: 61 EYNQILVKKPEGFDMWPF 79
          EYNQILVKKPEGFDMWPF
Sbjct: 61 EYNQILVKKPEGFDMWPF 72

[Close]
BLAST of CmaCh04G022570 vs. NCBI nr
Match: KAG7032696.1 (hypothetical protein SDJN02_06746 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.3 bits (373), Expect = 2.8e-32
Identity = 77/79 (97.47%), Postives = 77/79 (97.47%), Query Frame = 0 

Query: 1  MARAGGRSRNGDGNGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRP 60
          MARAGGRSRN  GNGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRP
Sbjct: 1  MARAGGRSRN--GNGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRP 60

Query: 61 EYNQILVKKPEGFDMWPFP 80
          EYNQILVKKPEGFDMWPFP
Sbjct: 61 EYNQILVKKPEGFDMWPFP 77

[Close]
BLAST of CmaCh04G022570 vs. NCBI nr
Match: KAG6601997.1 (hypothetical protein SDJN03_07230, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 143.7 bits (361), Expect = 6.9e-31
Identity = 75/79 (94.94%), Postives = 75/79 (94.94%), Query Frame = 0 

Query: 1  MARAGGRSRNGDGNGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRP 60
          MARAGGRSR    NGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRP
Sbjct: 1  MARAGGRSR----NGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRP 60

Query: 61 EYNQILVKKPEGFDMWPFP 80
          EYNQILVKKPEGFDMWPFP
Sbjct: 61 EYNQILVKKPEGFDMWPFP 75

[Close]
BLAST of CmaCh04G022570 vs. NCBI nr
Match: XP_022141376.1 (uncharacterized protein LOC111011789 [Momordica charantia])

HSP 1 Score: 124.0 bits (310), Expect = 5.7e-25
Identity = 63/78 (80.77%), Postives = 67/78 (85.90%), Query Frame = 0 

Query: 1  MARAGGRSRNGDGNGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRP 60
          MAR GGRSR      NGN+S VVGFLK   RFLKMAEFEILF+LFF+VAFI+FKDLTSRP
Sbjct: 1  MARTGGRSR------NGNDSAVVGFLKAVLRFLKMAEFEILFILFFVVAFILFKDLTSRP 60

Query: 61 EYNQILVKKPEGFDMWPF 79
          EYNQILVKKPEGFDMWPF
Sbjct: 61 EYNQILVKKPEGFDMWPF 72

[Close]
BLAST of CmaCh04G022570 vs. NCBI nr
Match: XP_022993749.1 (uncharacterized protein LOC111489659 [Cucurbita maxima])

HSP 1 Score: 120.2 bits (300), Expect = 8.2e-24
Identity = 64/78 (82.05%), Postives = 66/78 (84.62%), Query Frame = 0 

Query: 1  MARAGGRSRNGDGNGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRP 60
          MA AGGRSR      +GNE    GFLKT FRFLKMAEFEILFVLFFIVAFI+FKDLTSRP
Sbjct: 1  MALAGGRSR------SGNEPSGGGFLKTVFRFLKMAEFEILFVLFFIVAFIVFKDLTSRP 60

Query: 61 EYNQILVKKPEGFDMWPF 79
          EYNQILVKKPEGFDMWPF
Sbjct: 61 EYNQILVKKPEGFDMWPF 72

[Close]
BLAST of CmaCh04G022570 vs. NCBI nr
Match: XP_008463128.1 (PREDICTED: uncharacterized protein LOC103501353 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 1.4e-23
Identity = 63/78 (80.77%), Postives = 65/78 (83.33%), Query Frame = 0 

Query: 1  MARAGGRSRNGDGNGNGNESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRP 60
          MARA GRSRNG  +  G      GFLK  FRFLKMAEFEILFVLFFIVAFI+FKDLTSRP
Sbjct: 1  MARASGRSRNGSDSSGG------GFLKATFRFLKMAEFEILFVLFFIVAFIVFKDLTSRP 60

Query: 61 EYNQILVKKPEGFDMWPF 79
          EYNQILVKKPEGFDMWPF
Sbjct: 61 EYNQILVKKPEGFDMWPF 72

[Close]
BLAST of CmaCh04G022570 vs. TAIR 10
Match: AT3G14430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 83.2 bits (204), Expect = 1.0e-16
Identity = 36/61 (59.02%), Postives = 51/61 (83.61%), Query Frame = 0 

Query: 18 NESMVVGFLKTAFRFLKMAEFEILFVLFFIVAFIIFKDLTSRPEYNQILVKKPEGFDMWP 77
          ++S++  F+ + F F ++AEFEILFVLF ++ ++IFKDLTSRPEYN+ILV+KP G D+WP
Sbjct: 16 DDSLLTRFVDSVFYFFRLAEFEILFVLFMLITYVIFKDLTSRPEYNRILVEKPGGSDIWP 75

Query: 78 F 79
          F
Sbjct: 76 F 76

The following BLAST results are available for this feature:
BLAST of CmaCh04G022570 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G022570 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CIZ92.8e-2580.77uncharacterized protein LOC111011789 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A6J1K0Z34.0e-2482.05uncharacterized protein LOC111489659 OS=Cucurbita maxima OX=3661 GN=LOC111489659... [more]
A0A1S3CK246.8e-2480.77uncharacterized protein LOC103501353 OS=Cucumis melo OX=3656 GN=LOC103501353 PE=... [more]
A0A6J1FE483.4e-2379.49uncharacterized protein LOC111444698 OS=Cucurbita moschata OX=3662 GN=LOC1114446... [more]
A0A0A0KPT87.5e-2379.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G315390 PE=4 SV=1[more]
BLAST of CmaCh04G022570 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7032696.12.8e-3297.47hypothetical protein SDJN02_06746 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6601997.16.9e-3194.94hypothetical protein SDJN03_07230, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022141376.15.7e-2580.77uncharacterized protein LOC111011789 [Momordica charantia][more]
XP_022993749.18.2e-2482.05uncharacterized protein LOC111489659 [Cucurbita maxima][more]
XP_008463128.11.4e-2380.77PREDICTED: uncharacterized protein LOC103501353 [Cucumis melo][more]
BLAST of CmaCh04G022570 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G14430.11.0e-1659.02unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR37223OS08G0528601 PROTEINcoord: 8..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G022570.1CmaCh04G022570.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006979 response to oxidative stress
cellular_component GO:0016021 integral component of membrane