CmaCh04G018970 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G018970
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	survival of motor neuron-related-splicing factor 30
Location	Cma_Chr04: 9915964 .. 9921431 (-)
RNA-Seq Expression	CmaCh04G018970
Synteny	CmaCh04G018970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGTTATCGCCTTGACGGAAGAGCTTCTTTCAACAGCAAAGCAAAATGAGATTTCTGGATCAAATGTAGAAACTGGTGATGACAGTGCATCAATTAGTTTCCAGCAGACAAAAGGAAATAAGATGGTAAGTTCACATTTGTTCTTGTTTTGAGCATTACATCTCTGCTGGAAGCAACATTATATAATTAATGGTTATGGCTTTAGATTTAATGTGCACTGCTTGGATCTCTGTATTGTTTATTGTATATGTTGGTATTGTTTCTTTGCCTTATTTGGAAGCATCCCTCTAAATGGTTACTGACATGTAGTTTTATTGTTATGTGCTTCAATGATTCTTTGTGGTGCATATTTTTGGCCTAGGATTCTCTGTGTGCTTCTGCTTGGAAGCGATTTATTTATGGTTTCAATCATTGTTAACAATTAGAGGCTCTTTTGTATTTGAACTTGTTTGTGGGATTTATAAGGAAACTTGTTTGTTTCGCTTAATTTATAGGTTATGTGATTTTTGGAGAAATTAATTATTAGGTTTTAAATAACCCAAGGATAGACATATGATGCAATACAAATAGAAAGCATTGAAACTGATTAGGAAAGGAAAATATTAACTATTAATCAAAAAAAAAAGACTAATATCTAATTTGAAAAATAGTAGCCTATATAAATGATACAGATCTATACTTCTCCTCAAGTTGGGTGGAATACTGAATACAAGCCAAGCCTGAAAATAATTTCATCAAAATAAGAAAACTTGTCCATGGTAATGATTTGGTTGCGGTGTCAACAATTTGATGGTAAGATGGAGCATATTTTAGTTTTGCTATACTATTATTTACCTTTTTAGACTTGGAAGTAGTGATCTATCTATAGGTATTGACCTTCTAAGGGGTTCTCTTGTTCACACTTTCATTTTCTTTGTTTCCCTTCTATTCAGGGAGCCTCCGTCTTTTTCCTTTCTTTGGAAGATTAAAATTCCTGAGAAAGTGATTTTTTTTCTTGTAAAATCTAGCATGAGAGAGAGATAAACCATCCATGGTTATAGCCGACATTCCTCCTTTGTGTTCGCGGCCACAATATTTTTTTTTCCTAATGTCATATGGAGAATCTAGATCATCTCTTGTGGGGTTGTCAATTTGCTCACTCTCCTTGGATTAGATGCTATAGTTAGTTTGGGATTGTTACTCTTTGATTAGGAGATTCTAATGAACTCTCCCTTTCATGATTAGGGAAGAGTTTTATGGTAGACATGTTTCACAATTTTGTGGGAGAGTGGCTTAGGAGGAGAAACAGCAGGATCTCTAGAAGGGTTGAGAGGTATCGAGGGGAGAGGTGGGAGGCTGTGAGGTTTAATACCTCTTTATGGGCTTCCATGAATTTGTTATTTTTTTGTTATTATCAATTAGGTCTTACTCTTTCAGATTATAATCTGTTTTTGTAGGTTGTGGTGGATTCCTTTTGAGGCTTGGTATTTTTGTATGTCCTTGTACATTCTTTCATTTTTCTCAATGAAAGCACGATCTCTTATTAAGGAGATCTCGTAGTCGCTCAATATTTTGATTTCCTAACCCACCATTGGCAATAATTAGATATGTATAAGACTTATGCATGAAAATGTGTTGAAATCTTATCTTTGTATCAGAAGATAATTGAACAAAGGAGACCTTGAAGTTTTTTCCTCGTCTTAACAAGGAGCCAAACGATGTTAGAGGAATAATAATGGGTGCAGAACCCCTTCCTTCTATCCAGGAAATTGTTGCTGCCACACAAAGTGAGGAGTGCAGAAAATGACTGATTTCTGGCAAGCAACAGTTTCGTTGCTGCCATACATTTAATTCAAATATTACTAATAATTTTTTTTCTACTTCCTTTTCTTCTAGCAAGCAACTTCATCTATTGATCTCCCTTCTTTTCTCTCCCATGTTTTCCCCTCCCTCATCATCATCTTCTTCTCTTTTCTTCCCAAGGGAGAGGAGGAAACTCTTCTTCTTGGCCACCATTTTTTCCCCTCCAAAAACACTATCTTCATCTTTTTCTTATCTTCTTCCTCGTCATGTTACAAGAAGAAAACACCTCATTTGGTTCCACTATTTTTCATTTTTGGCTTTCACCATTTTCACTCCACCATACTCACCTTCAAATAGCCTCCACTTGACAATCTCTTTCCCTCAAGCAGCAACCAAAATTATGTTGTTCTATTCTTCTCGGTTTGCCACACATAAGCTATGGAAGGAAGTCAACACTATTATTTTTAAGACATACTGCAAAAAACAATTTGAATGGTTTGATATGGAAGCAGTACCACTCAAGAGACGCCATAAATTGCTTGGCAGTTGAATCAACCTTCCTTTGAATTGTATTTCAATATTGTATTCCATCCATGTACATAATGTTTACATGGAATTTTGGTGTTCTAATATTTTTTGTTTTTTGTATGCAGGAAGCTGAAAGCATGTCTGACTATCACGAAAAATTTCCTATTGGAACAAAAGTTCAAGCTGTTTGGAGCGAGGATGGGGAGTGGTGAGTAAAAAAAAGAAAAAGGGAGAAAATTTACAAACTCAAACAAATTCTGTTTCTCTAGGTAGTACACTGTGTCATTGAATTCCAAAACAGAAGAAAGTTTATTTGCCAACTTATTCCCTTTTGAGTTGGAAAAGAGACATTGTTGAAGAAAAGGGATATGTGCTTGAAAGGTTACAAATTACTTGAACACGTACTAGAGAATATTGAAAGTACTCTTTATTCACTGTTTCAAATTGACTGCCCCAGGAAATGCCAAAATAATAAGGGTCGGTCTTCATTTGCGGGCATGGAGGATAATTTTTTCTTGAAAATTTAGACTCTATCCAATTTAATGAACTACATTTCCATAAATTTTCTTTTTTTTTTTTTTTACAAAATGGTTAGTAATGAAAACCAGGCTCTTGTGCTATTTTTCATCATGTCGTTCAGTGAAGAGGGTTGGTCCCTAGTCAGGTTTAAAGCGTCTCTTTGGGCTTCAATTGCTAAAGAGTTTCATAATCCTTCACTAGGTCATATTTTTTATTTAAGAGCCCTTTTCTGTATAGCTTGTTGTTGAGGCTCCCATTTTCAGGCTATCATTTTGTTCGCCCGTTTTCTTTCATGTTTCTCAGTGTAGGTATTTTTTCTTGTTAAAAAAAATTCTGTTCAGCCATTTTGATTTGAGCCTTCGAAGTAACATTTCACTTGGTCTCTGGTCAAAAGGAGTGATAAGTCTATGAGAATAATTAGTCCGTTGAAGCTGATTTTACTTTCTAGATCTCTAGGCATATTCTAATTTTGTTGCTGGACGCATCTAAACTTCTCACAACCTCATTGTTCTTTGCCTCCTTTTCCGTTGACTGTTGTTTTTAATCGAAACAAAAAATTTTCCCTTGACTGTGTTCAATTGTATAAATATTCAGGTACGATGCTACAATTGAAGCCCATACTGTAAATGGTTTCTATGTTAGTTATGATGGTTGGGGAAACAAAGAAGAGGTAAGGTTTCTACTTCTGCAGTTTGCATGACTTTTGATTATTTCTAAAGAGTATTATAGTACTTCTTCAGAAAGATCTGTGTCTGATTTTCTCTAAATTAACTAGAACTGTGAAGAATTGGATCATGGTGAGTAAATACGGGAAATTTCCCTTTGGGTGGGTCTAATTTGTGGGACTAAAAACATTTGTAAGAATTCCTGGAAGGCCATCTTCGTTTTAGTTCCTTTGTTTGTTGGATTAGTTGGTATAAATGCCAAGGTTTCCATTTTGGTTTACAACAGGCTGTCCAGAAAACTGGAAGGTATCTTGAACTCATTCTCTCTAAGCCCATTTGTTATGTATATATTGGCTTTGATTACCACCAAGCCCCTAAAGAATTGTTTCCTTCTAAATGTAAAAATGCACGTTATTGAGAGATAATGGGAAGAGACTACTGCTAGTACAAGGAGAGTAAGCATGAGGGAGAACTCAATGAAGTTTAGGAGTTCGAATCATAGACCCTGTTAAATGGAATTGTTCACCTTTTACCTAAGTAGACAGTAAAAACATCTGCACCCATTGTCAACACTTACGATATCTACTAATTGTAGGTGGACCCTGCTAATGTAAGAACAATCCAACTGGAAGTTAATGCTTTGCTTGAAGCAGAAAGAATGGCTGAAGCTACAAAACAGGCTATCAAGCGCAAGATTGCTCAAGCTGCTTCTGTTGACTTCCAATCACGAAATTTACCATCAAGGCTTCGAATTGAACCTGATGATCCTGAGGATGTAGTAAGTGGTTGATAATCTTAATATTTCATGACAACTAATTTATTAATCTAGTAATTAAGACAAATTTAGTAGTGCATTTGTTTGTACCTGTGGTGCTTGAAGTTCATTTTTATTTTTATTATCAGAGTACAACCCCCCGCCCAAAACTTGCTCTGATGTAGTAATTTTTCTTGTATAGAAAGCCACCAAACGCAAGAAAATACATGCTTTCAAGTCAAAGATGCGCATAGAACAGCTTGAAGTTACCCAGAATAAACGGCAGAATGCTTGGCAGCAGTTTCAGTCAGCAAAAGGCAAGTCTAAGAAGGTAAGTTTTGTGAATTTTAGAATTTTGTGGAACATTCATGCGTTTTAGACCGAGGCCCAACAGGTATGAGGTAAAACCCCAAGGCCAAAGGAATAAGTATTTCAATTAGCATTAATCAAAACAGAATCATAATTGTAAGAAGGTTTCAAGAGGGGATGCCAGGTTGTATTTGTATCTGAGTATCTTCCCAACCCTTAAAATAACTTCCCTTGTTATCACATTTTCCCCTTTTAGCACCTTTGTGGCTGTCCAATGATAATTTATACATGCACATTCTCAGATTGGCTTCTTCTCTGGGCGCAAGAAGGAGAGCATTTTCAAGTCTCCTGATGATCCAAATGGCAAGGTTGGTGTGACTGGAAGTGGCAAGGGTTTGACTGAGTTTCAGAAGAGGGAAAAACACTTGCATCTCAAGGGTGCATCGGTGGAGATGGATGATTAAGGGCAGGTCAGATTTTGTAGGTTGCTGCTTTCTTTGTATGTATCTTCATTTAGTATCCATTTGGGGCCATCTTTCTGGTTAGATTCATATAAATGGTTATACCTGTACTAAAAGCTTAGGTTGGGGGATGATTCCCTCTGGGTAACATAGTTTTCTTATAAGAATGGTTACGAAGCCTAGCCATGACAGGATCTCTTTTCTTTGACGTTTTATTTTACGTTCTGTTTCCTTATTATGTGAAAAACCCAGCAATTGTGTTCAAATTTCCTCTCCCTCTAATCACCCTTCATTAGCAATGAAAAGAGTGAGTTCTATCCTAAGATGTTTATGGGAGCTTAATTTATAACATAGCATTTGCTTATGTGGAGGGAAGAATTTCAATATTCAATAATTTTAGTTCCATTCATTTGAAATGCATTTGCTAAGCAAAGATCAAGGCCTTC

mRNA sequence

ATGCAGGTTATCGCCTTGACGGAAGAGCTTCTTTCAACAGCAAAGCAAAATGAGATTTCTGGATCAAATGTAGAAACTGGTGATGACAGTGCATCAATTAGTTTCCAGCAGACAAAAGGAAATAAGATGGAAGCTGAAAGCATGTCTGACTATCACGAAAAATTTCCTATTGGAACAAAAGTTCAAGCTGTTTGGAGCGAGGATGGGGAGTGGTACGATGCTACAATTGAAGCCCATACTGTAAATGGTTTCTATGTTAGTTATGATGGTTGGGGAAACAAAGAAGAGGTGGACCCTGCTAATGTAAGAACAATCCAACTGGAAGTTAATGCTTTGCTTGAAGCAGAAAGAATGGCTGAAGCTACAAAACAGGCTATCAAGCGCAAGATTGCTCAAGCTGCTTCTGTTGACTTCCAATCACGAAATTTACCATCAAGGCTTCGAATTGAACCTGATGATCCTGAGGATGTAAAAGCCACCAAACGCAAGAAAATACATGCTTTCAAGTCAAAGATGCGCATAGAACAGCTTGAAGTTACCCAGAATAAACGGCAGAATGCTTGGCAGCAGTTTCAGTCAGCAAAAGGCAAGTCTAAGAAGATTGGCTTCTTCTCTGGGCGCAAGAAGGAGAGCATTTTCAAGTCTCCTGATGATCCAAATGGCAAGGTTGGTGTGACTGGAAGTGGCAAGGGTTTGACTGAGTTTCAGAAGAGGGAAAAACACTTGCATCTCAAGGGTGCATCGGTGGAGATGGATGATTAAGGGCAGGTCAGATTTTGTAGGTTGCTGCTTTCTTTGTATGTATCTTCATTTAGTATCCATTTGGGGCCATCTTTCTGGTTAGATTCATATAAATGGTTATACCTGTACTAAAAGCTTAGGTTGGGGGATGATTCCCTCTGGGTAACATAGTTTTCTTATAAGAATGGTTACGAAGCCTAGCCATGACAGGATCTCTTTTCTTTGACGTTTTATTTTACGTTCTGTTTCCTTATTATGTGAAAAACCCAGCAATTGTGTTCAAATTTCCTCTCCCTCTAATCACCCTTCATTAGCAATGAAAAGAGTGAGTTCTATCCTAAGATGTTTATGGGAGCTTAATTTATAACATAGCATTTGCTTATGTGGAGGGAAGAATTTCAATATTCAATAATTTTAGTTCCATTCATTTGAAATGCATTTGCTAAGCAAAGATCAAGGCCTTC

Coding sequence (CDS)

ATGCAGGTTATCGCCTTGACGGAAGAGCTTCTTTCAACAGCAAAGCAAAATGAGATTTCTGGATCAAATGTAGAAACTGGTGATGACAGTGCATCAATTAGTTTCCAGCAGACAAAAGGAAATAAGATGGAAGCTGAAAGCATGTCTGACTATCACGAAAAATTTCCTATTGGAACAAAAGTTCAAGCTGTTTGGAGCGAGGATGGGGAGTGGTACGATGCTACAATTGAAGCCCATACTGTAAATGGTTTCTATGTTAGTTATGATGGTTGGGGAAACAAAGAAGAGGTGGACCCTGCTAATGTAAGAACAATCCAACTGGAAGTTAATGCTTTGCTTGAAGCAGAAAGAATGGCTGAAGCTACAAAACAGGCTATCAAGCGCAAGATTGCTCAAGCTGCTTCTGTTGACTTCCAATCACGAAATTTACCATCAAGGCTTCGAATTGAACCTGATGATCCTGAGGATGTAAAAGCCACCAAACGCAAGAAAATACATGCTTTCAAGTCAAAGATGCGCATAGAACAGCTTGAAGTTACCCAGAATAAACGGCAGAATGCTTGGCAGCAGTTTCAGTCAGCAAAAGGCAAGTCTAAGAAGATTGGCTTCTTCTCTGGGCGCAAGAAGGAGAGCATTTTCAAGTCTCCTGATGATCCAAATGGCAAGGTTGGTGTGACTGGAAGTGGCAAGGGTTTGACTGAGTTTCAGAAGAGGGAAAAACACTTGCATCTCAAGGGTGCATCGGTGGAGATGGATGATTAA

Protein sequence

MQVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAEATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREKHLHLKGASVEMDD

Homology

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BLAST of CmaCh04G018970 vs. ExPASy Swiss-Prot
Match: Q6DEY1 (Survival of motor neuron-related-splicing factor 30 OS=Xenopus tropicalis OX=8364 GN=smndc1 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.5e-10
Identity = 73/247 (29.55%), Postives = 110/247 (44.53%), Query Frame = 0


Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV 61
           +VI LT++LLS+           ET DD+               +  +   + + +G K 
Sbjct: 41  EVIELTKDLLSSQPS--------ETADDACD-------------DMSASGSQSWKVGEKC 100

Query: 62  QAVWSEDGEWYDATI-EAHTVNG-FYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMA 121
            AVWS+DG+WY+A I E    NG   +++ G+GN E     N+R ++       E  +  
Sbjct: 101 MAVWSDDGQWYEAEIEEIDEENGTAAITFAGYGNAEVTSLLNLRPVE-------EGRKAK 160

Query: 122 EATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKR-KKIHAFKSKMRIEQLE 181
           E                   S NLP   +      E + A +  KK  A K   RI++LE
Sbjct: 161 E------------------DSGNLPMSKK------EMIAAQREYKKKKALKKAQRIKELE 220

Query: 182 VTQNKRQNAWQQFQS-AKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSG---KGLTE 241
             +  ++  WQQF + A  K+KK     G+ K SIF SP+   GKVGV   G   K +T+
Sbjct: 221 QEREDQKVKWQQFNNKAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADKPMTQ 230

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BLAST of CmaCh04G018970 vs. ExPASy Swiss-Prot
Match: O75940 (Survival of motor neuron-related-splicing factor 30 OS=Homo sapiens OX=9606 GN=SMNDC1 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.5e-08
Identity = 69/246 (28.05%), Postives = 109/246 (44.31%), Query Frame = 0


Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV 61
           +VI LT++LLST     ++ S+          SF  T+               + +G K 
Sbjct: 41  EVIELTKDLLSTQPSETLASSD----------SFASTQPT-----------HSWKVGDKC 100

Query: 62  QAVWSEDGEWYDATI-EAHTVNG-FYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMA 121
            AVWSEDG+ Y+A I E    NG   +++ G+GN E     N++ ++    A  ++    
Sbjct: 101 MAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVEEGRKAKEDSGNKP 160

Query: 122 EATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEV 181
            + K+ I ++                            +  K+KK  A K   RI++LE 
Sbjct: 161 MSKKEMIAQQ----------------------------REYKKKK--ALKKAQRIKELEQ 220

Query: 182 TQNKRQNAWQQFQS-AKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSG---KGLTEF 241
            +  ++  WQQF + A  K+KK     G+ K SIF SP+   GKVGV   G   K +T++
Sbjct: 221 EREDQKVKWQQFNNRAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADKPMTQY 230

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BLAST of CmaCh04G018970 vs. ExPASy Swiss-Prot
Match: Q5R591 (Survival of motor neuron-related-splicing factor 30 OS=Pongo abelii OX=9601 GN=SMNDC1 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.2e-08
Identity = 68/246 (27.64%), Postives = 109/246 (44.31%), Query Frame = 0


Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV 61
           +VI LT++LLST     ++ S+          SF  T+               + +G K 
Sbjct: 41  EVIELTKDLLSTQPSETLASSD----------SFASTQPT-----------HSWKVGDKC 100

Query: 62  QAVWSEDGEWYDATI-EAHTVNG-FYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMA 121
            A+WSEDG+ Y+A I E    NG   +++ G+GN E     N++ ++    A  ++    
Sbjct: 101 MAIWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVEEGRKAKEDSGNKP 160

Query: 122 EATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEV 181
            + K+ I ++                            +  K+KK  A K   RI++LE 
Sbjct: 161 MSKKEMIAQQ----------------------------REYKKKK--ALKKAQRIKELEQ 220

Query: 182 TQNKRQNAWQQFQS-AKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSG---KGLTEF 241
            +  ++  WQQF + A  K+KK     G+ K SIF SP+   GKVGV   G   K +T++
Sbjct: 221 EREDQKVKWQQFNNRAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADKPMTQY 230

[Close]

BLAST of CmaCh04G018970 vs. ExPASy Swiss-Prot
Match: Q3T045 (Survival of motor neuron-related-splicing factor 30 OS=Bos taurus OX=9913 GN=SMNDC1 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.2e-08
Identity = 67/246 (27.24%), Postives = 109/246 (44.31%), Query Frame = 0


Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV 61
           +VI LT++LLST     ++ S+          +F  T+               + +G K 
Sbjct: 41  EVIELTKDLLSTQPSETLASSD----------NFASTQPT-----------HSWKVGDKC 100

Query: 62  QAVWSEDGEWYDATI-EAHTVNG-FYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMA 121
            A+WSEDG+ Y+A I E    NG   +++ G+GN E     N++ ++    A  ++    
Sbjct: 101 MAIWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVEEGRKAKEDSGNKP 160

Query: 122 EATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEV 181
            + K+ I ++                            +  K+KK  A K   RI++LE 
Sbjct: 161 MSKKEMIAQQ----------------------------REYKKKK--ALKKAQRIKELEQ 220

Query: 182 TQNKRQNAWQQFQS-AKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSG---KGLTEF 241
            +  ++  WQQF + A  K+KK     G+ K SIF SP+   GKVGV   G   K +T++
Sbjct: 221 EREDQKVKWQQFNNRAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADKPMTQY 230

[Close]

BLAST of CmaCh04G018970 vs. ExPASy Swiss-Prot
Match: Q8BGT7 (Survival of motor neuron-related-splicing factor 30 OS=Mus musculus OX=10090 GN=Smndc1 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.7e-07
Identity = 68/246 (27.64%), Postives = 108/246 (43.90%), Query Frame = 0


Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV 61
           +VI LT++LLST     ++ S+          SF  T+               + +G K 
Sbjct: 41  EVIELTKDLLSTQPSETLASSD----------SFASTQPT-----------HSWKVGDKC 100

Query: 62  QAVWSEDGEWYDATI-EAHTVNG-FYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMA 121
            AVWSEDG+ Y+A I E    NG   +++  +GN E     N++ ++    A  ++    
Sbjct: 101 MAVWSEDGQCYEAEIEEIDEENGTAAITFAVYGNAEVTPLLNLKPVEEGRKAKEDSGNKP 160

Query: 122 EATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEV 181
            + K+ I ++                            +  K+KK  A K   RI++LE 
Sbjct: 161 MSKKEMIAQQ----------------------------REYKKKK--ALKKAQRIKELEQ 220

Query: 182 TQNKRQNAWQQFQS-AKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSG---KGLTEF 241
            +  ++  WQQF + A  K+KK     G+ K SIF SP+   GKVGV   G   K +T++
Sbjct: 221 EREDQKVKWQQFNNRAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADKPMTQY 230

[Close]

BLAST of CmaCh04G018970 vs. ExPASy TrEMBL
Match: A0A6J1K7R2 (survival of motor neuron-related-splicing factor 30 OS=Cucurbita maxima OX=3661 GN=LOC111493029 PE=4 SV=1)

HSP 1 Score: 487.6 bits (1254), Expect = 3.0e-134
Identity = 251/252 (99.60%), Postives = 252/252 (100.00%), Query Frame = 0


Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV 61
           +VIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV
Sbjct: 48  EVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV 107

Query: 62  QAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAEA 121
           QAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAEA
Sbjct: 108 QAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAEA 167

Query: 122 TKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ 181
           TKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ
Sbjct: 168 TKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ 227

Query: 182 NKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH 241
           NKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH
Sbjct: 228 NKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH 287

Query: 242 LHLKGASVEMDD 254
           LHLKGASVEMDD
Sbjct: 288 LHLKGASVEMDD 299

[Close]

BLAST of CmaCh04G018970 vs. ExPASy TrEMBL
Match: A0A6J1EY48 (survival of motor neuron-related-splicing factor 30 OS=Cucurbita moschata OX=3662 GN=LOC111439780 PE=4 SV=1)

HSP 1 Score: 487.6 bits (1254), Expect = 3.0e-134
Identity = 251/252 (99.60%), Postives = 252/252 (100.00%), Query Frame = 0


Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV 61
           +VIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV
Sbjct: 48  EVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV 107

Query: 62  QAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAEA 121
           QAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAEA
Sbjct: 108 QAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAEA 167

Query: 122 TKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ 181
           TKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ
Sbjct: 168 TKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ 227

Query: 182 NKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH 241
           NKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH
Sbjct: 228 NKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH 287

Query: 242 LHLKGASVEMDD 254
           LHLKGASVEMDD
Sbjct: 288 LHLKGASVEMDD 299

[Close]

BLAST of CmaCh04G018970 vs. ExPASy TrEMBL
Match: A0A1S3CD96 (survival of motor neuron-related-splicing factor 30 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499374 PE=4 SV=1)

HSP 1 Score: 473.8 bits (1218), Expect = 4.5e-130
Identity = 243/253 (96.05%), Postives = 249/253 (98.42%), Query Frame = 0


Query: 1   MQVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTK 60
           MQVIALTEELLSTAKQNE+SGSNVETGDDSASI FQQ K N+MEA SMSDYHEKFPIGTK
Sbjct: 22  MQVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQPKENEMEAGSMSDYHEKFPIGTK 81

Query: 61  VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAE 120
           VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAE
Sbjct: 82  VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAE 141

Query: 121 ATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT 180
           ATKQAIKRKIAQAASVDFQSRNLPS+LRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT
Sbjct: 142 ATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT 201

Query: 181 QNKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 240
           QNKRQNAWQQFQSAKGKSKKIGFFSGRK+ESIFKSPDDPNGKVGVTGSGKGLTEFQKREK
Sbjct: 202 QNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 261

Query: 241 HLHLKGASVEMDD 254
           HLHLKGA+VEMD+
Sbjct: 262 HLHLKGATVEMDE 274

[Close]

BLAST of CmaCh04G018970 vs. ExPASy TrEMBL
Match: A0A1S3CE07 (survival of motor neuron-related-splicing factor 30 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499374 PE=4 SV=1)

HSP 1 Score: 471.1 bits (1211), Expect = 2.9e-129
Identity = 241/252 (95.63%), Postives = 248/252 (98.41%), Query Frame = 0


Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV 61
           +VIALTEELLSTAKQNE+SGSNVETGDDSASI FQQ K N+MEA SMSDYHEKFPIGTKV
Sbjct: 18  EVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQPKENEMEAGSMSDYHEKFPIGTKV 77

Query: 62  QAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAEA 121
           QAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAEA
Sbjct: 78  QAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAEA 137

Query: 122 TKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ 181
           TKQAIKRKIAQAASVDFQSRNLPS+LRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ
Sbjct: 138 TKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ 197

Query: 182 NKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH 241
           NKRQNAWQQFQSAKGKSKKIGFFSGRK+ESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH
Sbjct: 198 NKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH 257

Query: 242 LHLKGASVEMDD 254
           LHLKGA+VEMD+
Sbjct: 258 LHLKGATVEMDE 269

[Close]

BLAST of CmaCh04G018970 vs. ExPASy TrEMBL
Match: A0A6J1DPE2 (survival of motor neuron-related-splicing factor 30 OS=Momordica charantia OX=3673 GN=LOC111022290 PE=4 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 5.7e-125
Identity = 234/252 (92.86%), Postives = 245/252 (97.22%), Query Frame = 0


Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV 61
           +VI+LTEELL+TAKQNEISGSNVETGD+SASISF Q+K  KMEAES+SD+HEKFPIG+KV
Sbjct: 48  EVISLTEELLATAKQNEISGSNVETGDNSASISFLQSKETKMEAESLSDHHEKFPIGSKV 107

Query: 62  QAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAEA 121
           QAVWSEDGEWYDATIEAHTVNGFYVSYD WGNKEEVDPANVR IQ EVNALLEAERMAEA
Sbjct: 108 QAVWSEDGEWYDATIEAHTVNGFYVSYDSWGNKEEVDPANVREIQQEVNALLEAERMAEA 167

Query: 122 TKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ 181
           TKQAIKRKIAQAASVDFQSRNLP +LRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ
Sbjct: 168 TKQAIKRKIAQAASVDFQSRNLPPKLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ 227

Query: 182 NKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH 241
           NKRQNAWQQFQSAKGKSKKIGFFSGRK+ESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH
Sbjct: 228 NKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH 287

Query: 242 LHLKGASVEMDD 254
           LHLKGA+VEMDD
Sbjct: 288 LHLKGATVEMDD 299

[Close]

BLAST of CmaCh04G018970 vs. NCBI nr
Match: KAG7032438.1 (Survival of motor neuron-related-splicing factor 30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 488.4 bits (1256), Expect = 3.7e-134
Identity = 252/253 (99.60%), Postives = 252/253 (99.60%), Query Frame = 0


Query: 1   MQVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTK 60
           MQVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESM DYHEKFPIGTK
Sbjct: 71  MQVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMCDYHEKFPIGTK 130

Query: 61  VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAE 120
           VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAE
Sbjct: 131 VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAE 190

Query: 121 ATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT 180
           ATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT
Sbjct: 191 ATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT 250

Query: 181 QNKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 240
           QNKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREK
Sbjct: 251 QNKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 310

Query: 241 HLHLKGASVEMDD 254
           HLHLKGASVEMDD
Sbjct: 311 HLHLKGASVEMDD 323

[Close]

BLAST of CmaCh04G018970 vs. NCBI nr
Match: XP_022933076.1 (survival of motor neuron-related-splicing factor 30 [Cucurbita moschata] >XP_022998367.1 survival of motor neuron-related-splicing factor 30 [Cucurbita maxima] >XP_023530530.1 survival of motor neuron-related-splicing factor 30 [Cucurbita pepo subsp. pepo] >KAG6601669.1 Survival of motor neuron-related-splicing factor 30, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 487.6 bits (1254), Expect = 6.3e-134
Identity = 251/252 (99.60%), Postives = 252/252 (100.00%), Query Frame = 0


Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV 61
           +VIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV
Sbjct: 48  EVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV 107

Query: 62  QAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAEA 121
           QAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAEA
Sbjct: 108 QAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAEA 167

Query: 122 TKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ 181
           TKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ
Sbjct: 168 TKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ 227

Query: 182 NKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH 241
           NKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH
Sbjct: 228 NKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH 287

Query: 242 LHLKGASVEMDD 254
           LHLKGASVEMDD
Sbjct: 288 LHLKGASVEMDD 299

[Close]

BLAST of CmaCh04G018970 vs. NCBI nr
Match: XP_008460591.1 (PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X1 [Cucumis melo])

HSP 1 Score: 473.8 bits (1218), Expect = 9.4e-130
Identity = 243/253 (96.05%), Postives = 249/253 (98.42%), Query Frame = 0


Query: 1   MQVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTK 60
           MQVIALTEELLSTAKQNE+SGSNVETGDDSASI FQQ K N+MEA SMSDYHEKFPIGTK
Sbjct: 22  MQVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQPKENEMEAGSMSDYHEKFPIGTK 81

Query: 61  VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAE 120
           VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAE
Sbjct: 82  VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAE 141

Query: 121 ATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT 180
           ATKQAIKRKIAQAASVDFQSRNLPS+LRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT
Sbjct: 142 ATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT 201

Query: 181 QNKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 240
           QNKRQNAWQQFQSAKGKSKKIGFFSGRK+ESIFKSPDDPNGKVGVTGSGKGLTEFQKREK
Sbjct: 202 QNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 261

Query: 241 HLHLKGASVEMDD 254
           HLHLKGA+VEMD+
Sbjct: 262 HLHLKGATVEMDE 274

[Close]

BLAST of CmaCh04G018970 vs. NCBI nr
Match: XP_008460593.1 (PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X2 [Cucumis melo])

HSP 1 Score: 471.1 bits (1211), Expect = 6.1e-129
Identity = 241/252 (95.63%), Postives = 248/252 (98.41%), Query Frame = 0


Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTKV 61
           +VIALTEELLSTAKQNE+SGSNVETGDDSASI FQQ K N+MEA SMSDYHEKFPIGTKV
Sbjct: 18  EVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQPKENEMEAGSMSDYHEKFPIGTKV 77

Query: 62  QAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAEA 121
           QAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAEA
Sbjct: 78  QAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAEA 137

Query: 122 TKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ 181
           TKQAIKRKIAQAASVDFQSRNLPS+LRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ
Sbjct: 138 TKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQ 197

Query: 182 NKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH 241
           NKRQNAWQQFQSAKGKSKKIGFFSGRK+ESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH
Sbjct: 198 NKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREKH 257

Query: 242 LHLKGASVEMDD 254
           LHLKGA+VEMD+
Sbjct: 258 LHLKGATVEMDE 269

[Close]

BLAST of CmaCh04G018970 vs. NCBI nr
Match: XP_004142809.1 (survival of motor neuron-related-splicing factor 30 isoform X2 [Cucumis sativus])

HSP 1 Score: 469.9 bits (1208), Expect = 1.4e-128
Identity = 240/253 (94.86%), Postives = 249/253 (98.42%), Query Frame = 0


Query: 1   MQVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFPIGTK 60
           MQVIALTEELLSTAKQNE+SGSNVETGDDSASI FQQ+K N+MEA SMSDYHEKFPIGTK
Sbjct: 1   MQVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMEAGSMSDYHEKFPIGTK 60

Query: 61  VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAE 120
           VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVN LLEAER+AE
Sbjct: 61  VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNPLLEAERVAE 120

Query: 121 ATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT 180
           ATKQAIKRKIAQAASVDFQSRNLPS+LRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT
Sbjct: 121 ATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT 180

Query: 181 QNKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 240
           QNKRQNAWQQFQ+AKGKSKKIGFFSGRK+ESIFKSPDDPNGKVGVTGSGKGLTEFQKREK
Sbjct: 181 QNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 240

Query: 241 HLHLKGASVEMDD 254
           HLHLKGA+VEMD+
Sbjct: 241 HLHLKGATVEMDE 253

[Close]

BLAST of CmaCh04G018970 vs. TAIR 10
Match: AT2G02570.1 (nucleic acid binding;RNA binding )

HSP 1 Score: 320.1 bits (819), Expect = 1.6e-87
Identity = 169/260 (65.00%), Postives = 206/260 (79.23%), Query Frame = 0


Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGN--------KMEAESMSDYHE 61
           +VIALTEE+L+TAKQNEIS S+       A +S + T G+        K    +   +  
Sbjct: 49  EVIALTEEVLATAKQNEISLSD-------AGVSAEATPGSPDLEGAWEKTGLRNDPIHEG 108

Query: 62  KFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALL 121
           KFP+GTKVQAV+S+DGEWYDATIEAHT NG++V+YD WGNKEEVDP NVR I  E NA++
Sbjct: 109 KFPVGTKVQAVFSDDGEWYDATIEAHTANGYFVAYDEWGNKEEVDPDNVRPI--EQNAIV 168

Query: 122 EAERMAEATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMR 181
           EAER+A+ATK A+KRKI +AAS D+Q++ LP++L+I+P+DPEDVK  KRKKIHAFKSK R
Sbjct: 169 EAERLAQATKNALKRKIEKAASSDYQTKTLPAKLKIDPNDPEDVKIAKRKKIHAFKSKAR 228

Query: 182 IEQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLT 241
            EQLEV QNK+QN WQQFQ+ K K+KK+GFF+GRKKESIFKSP+DP GKVGVTGSGKGLT
Sbjct: 229 FEQLEVVQNKKQNDWQQFQTTKAKTKKVGFFTGRKKESIFKSPEDPFGKVGVTGSGKGLT 288

Query: 242 EFQKREKHLHLKGASVEMDD 254
           +FQKREKHLHLK  + E  D
Sbjct: 289 DFQKREKHLHLKSGNAEGTD 299

[Close]

BLAST of CmaCh04G018970 vs. TAIR 10
Match: AT2G02570.2 (nucleic acid binding;RNA binding )

HSP 1 Score: 320.1 bits (819), Expect = 1.6e-87
Identity = 169/260 (65.00%), Postives = 206/260 (79.23%), Query Frame = 0


Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGN--------KMEAESMSDYHE 61
           +VIALTEE+L+TAKQNEIS S+       A +S + T G+        K    +   +  
Sbjct: 49  EVIALTEEVLATAKQNEISLSD-------AGVSAEATPGSPDLEGAWEKTGLRNDPIHEG 108

Query: 62  KFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALL 121
           KFP+GTKVQAV+S+DGEWYDATIEAHT NG++V+YD WGNKEEVDP NVR I  E NA++
Sbjct: 109 KFPVGTKVQAVFSDDGEWYDATIEAHTANGYFVAYDEWGNKEEVDPDNVRPI--EQNAIV 168

Query: 122 EAERMAEATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMR 181
           EAER+A+ATK A+KRKI +AAS D+Q++ LP++L+I+P+DPEDVK  KRKKIHAFKSK R
Sbjct: 169 EAERLAQATKNALKRKIEKAASSDYQTKTLPAKLKIDPNDPEDVKIAKRKKIHAFKSKAR 228

Query: 182 IEQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLT 241
            EQLEV QNK+QN WQQFQ+ K K+KK+GFF+GRKKESIFKSP+DP GKVGVTGSGKGLT
Sbjct: 229 FEQLEVVQNKKQNDWQQFQTTKAKTKKVGFFTGRKKESIFKSPEDPFGKVGVTGSGKGLT 288

Query: 242 EFQKREKHLHLKGASVEMDD 254
           +FQKREKHLHLK  + E  D
Sbjct: 289 DFQKREKHLHLKSGNAEGTD 299

[Close]

BLAST of CmaCh04G018970 vs. TAIR 10
Match: AT2G02570.4 (nucleic acid binding;RNA binding )

HSP 1 Score: 320.1 bits (819), Expect = 1.6e-87
Identity = 169/260 (65.00%), Postives = 206/260 (79.23%), Query Frame = 0


Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGN--------KMEAESMSDYHE 61
           +VIALTEE+L+TAKQNEIS S+       A +S + T G+        K    +   +  
Sbjct: 49  EVIALTEEVLATAKQNEISLSD-------AGVSAEATPGSPDLEGAWEKTGLRNDPIHEG 108

Query: 62  KFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALL 121
           KFP+GTKVQAV+S+DGEWYDATIEAHT NG++V+YD WGNKEEVDP NVR I  E NA++
Sbjct: 109 KFPVGTKVQAVFSDDGEWYDATIEAHTANGYFVAYDEWGNKEEVDPDNVRPI--EQNAIV 168

Query: 122 EAERMAEATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMR 181
           EAER+A+ATK A+KRKI +AAS D+Q++ LP++L+I+P+DPEDVK  KRKKIHAFKSK R
Sbjct: 169 EAERLAQATKNALKRKIEKAASSDYQTKTLPAKLKIDPNDPEDVKIAKRKKIHAFKSKAR 228

Query: 182 IEQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLT 241
            EQLEV QNK+QN WQQFQ+ K K+KK+GFF+GRKKESIFKSP+DP GKVGVTGSGKGLT
Sbjct: 229 FEQLEVVQNKKQNDWQQFQTTKAKTKKVGFFTGRKKESIFKSPEDPFGKVGVTGSGKGLT 288

Query: 242 EFQKREKHLHLKGASVEMDD 254
           +FQKREKHLHLK  + E  D
Sbjct: 289 DFQKREKHLHLKSGNAEGTD 299

[Close]

BLAST of CmaCh04G018970 vs. TAIR 10
Match: AT2G02570.3 (nucleic acid binding;RNA binding )

HSP 1 Score: 293.9 bits (751), Expect = 1.2e-79
Identity = 159/260 (61.15%), Postives = 196/260 (75.38%), Query Frame = 0


Query: 2   QVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGN--------KMEAESMSDYHE 61
           +VIALTEE+L+TAKQNEIS S+       A +S + T G+        K    +   +  
Sbjct: 49  EVIALTEEVLATAKQNEISLSD-------AGVSAEATPGSPDLEGAWEKTGLRNDPIHEG 108

Query: 62  KFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALL 121
           KFP+GTKVQAV+S+DGEWYDATIEAHT NG++V+YD WGNKEEVDP NVR I  E NA++
Sbjct: 109 KFPVGTKVQAVFSDDGEWYDATIEAHTANGYFVAYDEWGNKEEVDPDNVRPI--EQNAIV 168

Query: 122 EAERMAEATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMR 181
           EAER+A+ATK A+KRKI +AAS D+Q++ LP++L+I+P+DPEDVK  KRKKIH       
Sbjct: 169 EAERLAQATKNALKRKIEKAASSDYQTKTLPAKLKIDPNDPEDVKIAKRKKIH------- 228

Query: 182 IEQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLT 241
                V QNK+QN WQQFQ+ K K+KK+GFF+GRKKESIFKSP+DP GKVGVTGSGKGLT
Sbjct: 229 -----VVQNKKQNDWQQFQTTKAKTKKVGFFTGRKKESIFKSPEDPFGKVGVTGSGKGLT 287

Query: 242 EFQKREKHLHLKGASVEMDD 254
           +FQKREKHLHLK  + E  D
Sbjct: 289 DFQKREKHLHLKSGNAEGTD 287

The following BLAST results are available for this feature:

BLAST of CmaCh04G018970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6DEY1	3.5e-10	29.55	Survival of motor neuron-related-splicing factor 30 OS=Xenopus tropicalis OX=836...	[more]
O75940	2.5e-08	28.05	Survival of motor neuron-related-splicing factor 30 OS=Homo sapiens OX=9606 GN=S...	[more]
Q5R591	3.2e-08	27.64	Survival of motor neuron-related-splicing factor 30 OS=Pongo abelii OX=9601 GN=S...	[more]
Q3T045	7.2e-08	27.24	Survival of motor neuron-related-splicing factor 30 OS=Bos taurus OX=9913 GN=SMN...	[more]
Q8BGT7	2.7e-07	27.64	Survival of motor neuron-related-splicing factor 30 OS=Mus musculus OX=10090 GN=...	[more]

BLAST of CmaCh04G018970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K7R2	3.0e-134	99.60	survival of motor neuron-related-splicing factor 30 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1EY48	3.0e-134	99.60	survival of motor neuron-related-splicing factor 30 OS=Cucurbita moschata OX=366...	[more]
A0A1S3CD96	4.5e-130	96.05	survival of motor neuron-related-splicing factor 30 isoform X1 OS=Cucumis melo O...	[more]
A0A1S3CE07	2.9e-129	95.63	survival of motor neuron-related-splicing factor 30 isoform X2 OS=Cucumis melo O...	[more]
A0A6J1DPE2	5.7e-125	92.86	survival of motor neuron-related-splicing factor 30 OS=Momordica charantia OX=36...	[more]

BLAST of CmaCh04G018970 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032438.1	3.7e-134	99.60	Survival of motor neuron-related-splicing factor 30 [Cucurbita argyrosperma subs...	[more]
XP_022933076.1	6.3e-134	99.60	survival of motor neuron-related-splicing factor 30 [Cucurbita moschata] >XP_022...	[more]
XP_008460591.1	9.4e-130	96.05	PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X1 [Cucum...	[more]
XP_008460593.1	6.1e-129	95.63	PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X2 [Cucum...	[more]
XP_004142809.1	1.4e-128	94.86	survival of motor neuron-related-splicing factor 30 isoform X2 [Cucumis sativus]	[more]

BLAST of CmaCh04G018970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G02570.1	1.6e-87	65.00	nucleic acid binding;RNA binding	[more]
AT2G02570.2	1.6e-87	65.00	nucleic acid binding;RNA binding	[more]
AT2G02570.4	1.6e-87	65.00	nucleic acid binding;RNA binding	[more]
AT2G02570.3	1.2e-79	61.15	nucleic acid binding;RNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 112..132
None	No IPR available	GENE3D	2.30.30.140		coord: 49..106 e-value: 4.1E-11 score: 44.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..230
None	No IPR available	PANTHER	PTHR13681	SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATED	coord: 2..246
None	No IPR available	PANTHER	PTHR13681:SF32	BNAA06G34090D PROTEIN	coord: 2..246
None	No IPR available	SUPERFAMILY	63748	Tudor/PWWP/MBT	coord: 54..105
IPR002999	Tudor domain	SMART	SM00333	TUDOR_7	coord: 53..110 e-value: 1.7E-11 score: 54.2
IPR002999	Tudor domain	PROSITE	PS50304	TUDOR	coord: 54..112 score: 13.444279
IPR002999	Tudor domain	CDD	cd04508	TUDOR	coord: 58..103 e-value: 6.59734E-11 score: 54.1411
IPR010304	Survival motor neuron	PFAM	PF06003	SMN	coord: 16..111 e-value: 6.7E-8 score: 32.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G018970.1	CmaCh04G018970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding