CmaCh04G002610 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G002610
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	zinc finger CCCH domain-containing protein 11-like
Location	Cma_Chr04: 1281395 .. 1284103 (+)
RNA-Seq Expression	CmaCh04G002610
Synteny	CmaCh04G002610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTATTTGCTTATTCCAGCGTGCAAAAGTTAAAACCACTACTCCCATTACACCGGAGCTTTTCTTTCAATGGAAGAAGAAAAAGATGAATGAAAGAGATGCTGGTTTGGCTGCACAACAAGCAGAGAGAGCTAAGAATGATCGCATGAGGTTTCTACATTACTCATATAGTTAATTTTACTTTTAAAGGTAATTAATAGTCATATAAGTTCCATTTTGTTCTTCAGTGGTCGGGAGTTGTTTCTTGCAAATGCAAGCTTGTTTGTGGATGACGCCGAGGCGTATGAAAAATATCAGCGAGAAGAACCTGAAGCTGACGATGAACAAAAGGTAATTCTATGTGTGAAATTCGTACAGATTGCTTGTTGCTTCAGTCATTTGCGATTCTGGCTCATGAGTTATGCCGAACAGTTTGTTCATGGCCGTGTCCTTAGTTTACAACATTACCTTGCCAGTCAAATTTCCTTCCATGCTGTCTGGTTAATGAGTTTTCTATCCCTTTATGCCCTCTATTTTTCATGTGTTTCTGTAGTGTCTTCCCCTCCTCACTCTCTGGTTCAAGAACGAATGTTATGGATCCAAAAAGAAATAGGAAAAGGAGTACAAGTAATTCTAGTCCACTAAGAGACCAAGGGGGATGACTGAACGGCCCTCTAGTTGTTTAATATTAAATAGTGAAATTACAAGAAAACCTTTTTGAGGTTTCACTACTTTGAGGCTTAAAACTAGTTAAAATCCTAACTCTAACCCATACGGATTGAATAATTCTCTTCTCTCCCCCAAAGATAGACACCATCATATAGCTGTGTAAGCCCATTCATATAAAGGCTTCAACTTGGTTAATTGAACAAACTATATCAGTAGAATTTGCCCGATCTCACCCTTTGAAGTTACAAAAATTGAAGAATATCCATATTCTTTCGGAAGAAGGGAAGTAGCATAAGTGGTGTATTTGGTTTTCATTATATGCACAAGTGATATGTTTGGTTTTCATTATACTTGTTGCAAAGAACTCACCAGCTTGGGAAATGATTGAACAGTGGTTGTTCTCCTAGCAATGGTCCACCGAGTATTTAACTTTCTACAAATTGCTGATAAAACAAAGACTTTCACCTTCTTAGGAGCTTTGAAGTTCCGTAGTTCATTGGAGAGTGATCTTGTAATAACCTCCAACTGCTTGGCAAGGCAGTCAAACAAAATCTTACTAGTGAATGTCCTTGGTTTATCTAATTTCTGAATTCGGTTATCACATTAGCTATTCTAACACACAAAAATCAATCTGTCGGTGAGGCTGGATCACCTCCACCTTTCTATGGATGAGGTTCCTCCTGAAATATTTTTCTAATATCTGCAAGTGTATTGGGTCAATTTTGTGCACTCCGACTAATCTTATGGGACAACTGCATTGCCTAGAAAATTTATAGGATTTTAAATCCTAGGAAGTAGCCACCATGATTTCTCTTGGCCATAACAAGCACTAGGCCTTGAATAGGAGATCTCAATTCTCAACCACCATCTTCCAATCCAAGTGCGCCATCAATGATTGTACTTGTTAATTGGAAGTATGACAATCTACTCTATCCTCCCATTCTAATGAAATCTCTTAATCGTCCATCAATCTTATCAACCTTCAACAGAATCGTGAAGATGTGAGAGATGGTGAATTTCTAAAGCTTTCGGGTTCAAAGGTGTGCATGATTGATATAGCTTCTTTCAAAAGAATGCCTTCATTGATCTTTGTAGCTCATTCTTCCCAAGATCTGATACCTAAAACTTATGAGACAGTAGGATTTCTTTGATGAGAATACAATTACGCGGATACCCTTGCTCCACCTTGGATCTTCATTGATTACAAAATTGGTCCTAGATAGATAGCAGTTAGAGAAAGGAACTCTGTCCATAAAGCAACACTTGAAGCTTCGATATACCAATCAAAGCTTTGTAGACGTTCCTTCTCAAGACTCTTCATGTCTATTGCATCTCAATCACTGTGAAAATCATTTGAGAGGGCAAGTCGTTGGAAAACGAAGCCTGCACTCAAGGCCATTGTTAGCACCAAACAGGTCCCCCCTTGGCCTTCCATTTAGTGGGGGATAGATCTGGTAGGAGCATTCCCAATTAGCGGTTGGGCAAAAGCAGCATTCAATTATGGACTTAAGATTAAAAGTTTTATCATTCAAGAATAGTTATGAAGTCTAGGCATTCTACTTTTGGGGCATTAAGCTTCAAATATTCTTATATCCTTTTTTTTACCCCGTGCAATTTCAGGCCAAGGATAATTCAACGGGTAGACCCACTTCCTCAACAAGTGCTGTGGATGATTCTGAGGATGTTCTCTTGGATGATGACGACGACGACGACGACGAACTAGATCTTGACGAGCTAAACGAGCTTGAGGCAAGTTTATCTAGAACGTCAATTCAGATCCGGGAGCCAGGTATTGAGCCCTCTTGAGACATTTGTTCATTACTGCGGAGTATGTGTTTGTAATCTAATCTGGTAAAGAATTGAAGAACATAATGGATTTGAGTTTATGTTCTCTTATTTAGAAGTGGAATGACTCCAATGGTTGCCATATAACATATTCAAATTTTGACTCCCTGTTCTTCTGTTTGCCCCTTTAGCCTCAGTGTAAACAAGCTATTACTGGTTTGCAATAATTTCGACTCCACTTGTAATTGTGCTCGTTTTTTCACCATTTCGTTAT

mRNA sequence

ATGTTTATTTGCTTATTCCAGCGTGCAAAAGTTAAAACCACTACTCCCATTACACCGGAGCTTTTCTTTCAATGGAAGAAGAAAAAGATGAATGAAAGAGATGCTGGTTTGGCTGCACAACAAGCAGAGAGAGCTAAGAATGATCGCATGAGTGGTCGGGAGTTGTTTCTTGCAAATGCAAGCTTGTTTGTGGATGACGCCGAGGCGTATGAAAAATATCAGCGAGAAGAACCTGAAGCTGACGATGAACAAAAGGCCAAGGATAATTCAACGGGTAGACCCACTTCCTCAACAAGTGCTGTGGATGATTCTGAGGATGTTCTCTTGGATGATGACGACGACGACGACGACGAACTAGATCTTGACGAGCTAAACGAGCTTGAGGCAAGTTTATCTAGAACGTCAATTCAGATCCGGGAGCCAGGTATTGAGCCCTCTTGAGACATTTGTTCATTACTGCGGAGTATGTGTTTGTAATCTAATCTGGTAAAGAATTGAAGAACATAATGGATTTGAGTTTATGTTCTCTTATTTAGAAGTGGAATGACTCCAATGGTTGCCATATAACATATTCAAATTTTGACTCCCTGTTCTTCTGTTTGCCCCTTTAGCCTCAGTGTAAACAAGCTATTACTGGTTTGCAATAATTTCGACTCCACTTGTAATTGTGCTCGTTTTTTCACCATTTCGTTAT

Coding sequence (CDS)

ATGTTTATTTGCTTATTCCAGCGTGCAAAAGTTAAAACCACTACTCCCATTACACCGGAGCTTTTCTTTCAATGGAAGAAGAAAAAGATGAATGAAAGAGATGCTGGTTTGGCTGCACAACAAGCAGAGAGAGCTAAGAATGATCGCATGAGTGGTCGGGAGTTGTTTCTTGCAAATGCAAGCTTGTTTGTGGATGACGCCGAGGCGTATGAAAAATATCAGCGAGAAGAACCTGAAGCTGACGATGAACAAAAGGCCAAGGATAATTCAACGGGTAGACCCACTTCCTCAACAAGTGCTGTGGATGATTCTGAGGATGTTCTCTTGGATGATGACGACGACGACGACGACGAACTAGATCTTGACGAGCTAAACGAGCTTGAGGCAAGTTTATCTAGAACGTCAATTCAGATCCGGGAGCCAGGTATTGAGCCCTCTTGA

Protein sequence

MFICLFQRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDDAEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNELEASLSRTSIQIREPGIEPS

Homology

[Close]

BLAST of CmaCh04G002610 vs. ExPASy Swiss-Prot
Match: Q9SK74 (Zinc finger CCCH domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=At2g20280 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.6e-37
Identity = 93/144 (64.58%), Postives = 113/144 (78.47%), Query Frame = 0


Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAK++T T +TP LF +WK+KK+ ERDAGLAA QAERAKNDRMSGRELFL+NASLFVDD
Sbjct: 227 ERAKLQTATQMTPALFMEWKRKKIAERDAGLAASQAERAKNDRMSGRELFLSNASLFVDD 286

Query: 67  AEAYEKYQREEPEADDEQKAKDN--STGRPTSSTSAVDDSEDV--LLDDDDDDDDELDLD 126
           AEA E+Y+RE  + + EQKAK+     G   SS  A   S++V    +DDDDDDD+LD+D
Sbjct: 287 AEACEEYEREREQEETEQKAKNKEAEAGTSKSSGDAEQSSKEVNEEEEDDDDDDDDLDMD 346

Query: 127 ELNELEASLSRTSIQIREPGIEPS 147
           EL+ELEASLS+TSIQIREP  E S
Sbjct: 347 ELDELEASLSKTSIQIREPNDEGS 370

[Close]

BLAST of CmaCh04G002610 vs. ExPASy Swiss-Prot
Match: Q0JHZ2 (Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0834700 PE=2 SV=2)

HSP 1 Score: 148.7 bits (374), Expect = 5.2e-35
Identity = 87/139 (62.59%), Postives = 111/139 (79.86%), Query Frame = 0


Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           QR KVKTTTP+T +LF +WK+KK  ER+AGLAA +AERAKNDRMSGRELF+A++S+FVDD
Sbjct: 227 QRKKVKTTTPMTTDLFMEWKRKKAEEREAGLAALRAERAKNDRMSGRELFMADSSVFVDD 286

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTS---AVDDSEDVLLDDDDDDDDELDLDE 126
           AEAY+ Y+R+E    +E+ +  N    P+SSTS    V++S+    D+D + DD+LD+DE
Sbjct: 287 AEAYDVYERQEESEANEEPSNKNQDEGPSSSTSNGKEVEESD----DEDINIDDDLDIDE 346

Query: 127 LNELEASLSRTSIQIREPG 143
           LNELEASLSRTSIQIREPG
Sbjct: 347 LNELEASLSRTSIQIREPG 361

[Close]

BLAST of CmaCh04G002610 vs. ExPASy Swiss-Prot
Match: Q54DA5 (Zinc finger CCCH domain-containing protein 15 homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0292410 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-07
Identity = 45/122 (36.89%), Postives = 66/122 (54.10%), Query Frame = 0


Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAER-----AKNDRMSGRELFLANAS 66
           +RAK+  +TP+T E F +WK++K  +++      Q +R     A    MSGRE+F+ N  
Sbjct: 233 ERAKLTKSTPVTLETFLRWKEEKRLQKEKAAKDAQDKRLADIKAGKTSMSGREMFVFNPD 292

Query: 67  LFVDDAEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDL 124
           LFVDD  A +   +E  ++++E  A  N       +   V  S+D   DDDDDDDDE   
Sbjct: 293 LFVDDESAIDTKSKEYEKSEEEIAALANQINTSLFTDGGVLPSDDDDDDDDDDDDDEDGD 352

[Close]

BLAST of CmaCh04G002610 vs. ExPASy TrEMBL
Match: A0A6J1JHM5 (zinc finger CCCH domain-containing protein 11-like OS=Cucurbita maxima OX=3661 GN=LOC111485787 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.9e-65
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD
Sbjct: 223 ERAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 282

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE 126
           AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE
Sbjct: 283 AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE 342

Query: 127 LEASLSRTSIQIREPGIEPS 147
           LEASLSRTSIQIREPGIEPS
Sbjct: 343 LEASLSRTSIQIREPGIEPS 362

[Close]

BLAST of CmaCh04G002610 vs. ExPASy TrEMBL
Match: A0A6J1FQA9 (zinc finger CCCH domain-containing protein 11-like OS=Cucurbita moschata OX=3662 GN=LOC111447811 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.8e-62
Identity = 135/140 (96.43%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAKVKTTTPITPELFFQWKKKKM+ERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD
Sbjct: 223 ERAKVKTTTPITPELFFQWKKKKMDERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 282

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE 126
           AEAYEKYQREEPEADDEQKA+DNSTGRPT+STSAVDDSEDVLL DDDDDDDELDLDELNE
Sbjct: 283 AEAYEKYQREEPEADDEQKAEDNSTGRPTTSTSAVDDSEDVLL-DDDDDDDELDLDELNE 342

Query: 127 LEASLSRTSIQIREPGIEPS 147
           LEASLSRTSIQIREPGIEPS
Sbjct: 343 LEASLSRTSIQIREPGIEPS 361

[Close]

BLAST of CmaCh04G002610 vs. ExPASy TrEMBL
Match: A0A1S3BDM3 (zinc finger CCCH domain-containing protein 11 OS=Cucumis melo OX=3656 GN=LOC103488739 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.1e-54
Identity = 123/140 (87.86%), Postives = 131/140 (93.57%), Query Frame = 0


Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAKVKTTTPITPELFFQWKKKKM+ER+AGLAAQQAERAKNDRMSGRELFLANASLFVDD
Sbjct: 225 ERAKVKTTTPITPELFFQWKKKKMDERNAGLAAQQAERAKNDRMSGRELFLANASLFVDD 284

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE 126
           AEAYEKYQREE    DE KAKDNSTG P++ST+AVDDSEDVLL  D+DDDDELDLDELNE
Sbjct: 285 AEAYEKYQREEEPEADESKAKDNSTGGPSTSTNAVDDSEDVLL--DEDDDDELDLDELNE 344

Query: 127 LEASLSRTSIQIREPGIEPS 147
           LEA+LSRTSIQIREPGIE S
Sbjct: 345 LEATLSRTSIQIREPGIEAS 362

[Close]

BLAST of CmaCh04G002610 vs. ExPASy TrEMBL
Match: A0A6J1H1W4 (zinc finger CCCH domain-containing protein 11-like OS=Cucurbita moschata OX=3662 GN=LOC111458829 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 4.0e-54
Identity = 123/140 (87.86%), Postives = 130/140 (92.86%), Query Frame = 0


Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAKVKTTTPITPELFFQWKKKKM+ERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD
Sbjct: 224 ERAKVKTTTPITPELFFQWKKKKMDERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 283

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE 126
           AEAYEKYQREE    DE KAKDN+TG P++STSA+DDSEDVLL  D+DDDDELDLDELNE
Sbjct: 284 AEAYEKYQREEEPEADEPKAKDNATGGPSTSTSAIDDSEDVLL--DEDDDDELDLDELNE 343

Query: 127 LEASLSRTSIQIREPGIEPS 147
           LEASLSRTSIQI EPGIE S
Sbjct: 344 LEASLSRTSIQIGEPGIEAS 361

[Close]

BLAST of CmaCh04G002610 vs. ExPASy TrEMBL
Match: A0A6J1JJ07 (zinc finger CCCH domain-containing protein 11-like OS=Cucurbita maxima OX=3661 GN=LOC111486255 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 5.2e-54
Identity = 124/140 (88.57%), Postives = 129/140 (92.14%), Query Frame = 0


Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAKVKTTTPITPELFFQWKKKKM+ERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD
Sbjct: 224 ERAKVKTTTPITPELFFQWKKKKMDERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 283

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE 126
           AEAYEKYQREE    DE KAKDN TG P++STSAVDDSEDVLL  D+DDDDELDLDELNE
Sbjct: 284 AEAYEKYQREEEPEADEPKAKDNPTGGPSTSTSAVDDSEDVLL--DEDDDDELDLDELNE 343

Query: 127 LEASLSRTSIQIREPGIEPS 147
           LEASLSRTSIQI EPGIE S
Sbjct: 344 LEASLSRTSIQIGEPGIEAS 361

[Close]

BLAST of CmaCh04G002610 vs. NCBI nr
Match: XP_022988591.1 (zinc finger CCCH domain-containing protein 11-like [Cucurbita maxima])

HSP 1 Score: 257.3 bits (656), Expect = 8.0e-65
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD
Sbjct: 223 ERAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 282

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE 126
           AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE
Sbjct: 283 AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE 342

Query: 127 LEASLSRTSIQIREPGIEPS 147
           LEASLSRTSIQIREPGIEPS
Sbjct: 343 LEASLSRTSIQIREPGIEPS 362

[Close]

BLAST of CmaCh04G002610 vs. NCBI nr
Match: XP_023511761.1 (zinc finger CCCH domain-containing protein 11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 246.5 bits (628), Expect = 1.4e-61
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAKVKTTTPITPELFFQWKKKKM+ERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD
Sbjct: 223 ERAKVKTTTPITPELFFQWKKKKMDERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 282

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE 126
           AEAYEKYQREEPEADDEQKAKDNSTGRPT+STSAVDDSEDVLL  DDDDDDELDLDELNE
Sbjct: 283 AEAYEKYQREEPEADDEQKAKDNSTGRPTTSTSAVDDSEDVLL--DDDDDDELDLDELNE 342

Query: 127 LEASLSRTSIQIREPGIEPS 147
           LEASLSRTSIQIREPGIEPS
Sbjct: 343 LEASLSRTSIQIREPGIEPS 360

[Close]

BLAST of CmaCh04G002610 vs. NCBI nr
Match: XP_022942926.1 (zinc finger CCCH domain-containing protein 11-like [Cucurbita moschata])

HSP 1 Score: 246.5 bits (628), Expect = 1.4e-61
Identity = 135/140 (96.43%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAKVKTTTPITPELFFQWKKKKM+ERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD
Sbjct: 223 ERAKVKTTTPITPELFFQWKKKKMDERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 282

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE 126
           AEAYEKYQREEPEADDEQKA+DNSTGRPT+STSAVDDSEDVLL DDDDDDDELDLDELNE
Sbjct: 283 AEAYEKYQREEPEADDEQKAEDNSTGRPTTSTSAVDDSEDVLL-DDDDDDDELDLDELNE 342

Query: 127 LEASLSRTSIQIREPGIEPS 147
           LEASLSRTSIQIREPGIEPS
Sbjct: 343 LEASLSRTSIQIREPGIEPS 361

[Close]

BLAST of CmaCh04G002610 vs. NCBI nr
Match: KAG6600095.1 (Zinc finger CCCH domain-containing protein 11, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030767.1 Zinc finger CCCH domain-containing protein 11 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 246.5 bits (628), Expect = 1.4e-61
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAKVKTTTPITPELFFQWKKKKM+ERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD
Sbjct: 223 ERAKVKTTTPITPELFFQWKKKKMDERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 282

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLDDDDDDDDELDLDELNE 126
           AEAYEKYQREEPEADDEQKAKDNSTGRPT+STSAVDDSEDVLL  DDDDDDELDLDELNE
Sbjct: 283 AEAYEKYQREEPEADDEQKAKDNSTGRPTTSTSAVDDSEDVLL--DDDDDDELDLDELNE 342

Query: 127 LEASLSRTSIQIREPGIEPS 147
           LEASLSRTSIQIREPGIEPS
Sbjct: 343 LEASLSRTSIQIREPGIEPS 360

[Close]

BLAST of CmaCh04G002610 vs. NCBI nr
Match: KAG7031850.1 (Zinc finger CCCH domain-containing protein 11 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 225.3 bits (573), Expect = 3.4e-55
Identity = 126/141 (89.36%), Postives = 132/141 (93.62%), Query Frame = 0


Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAKVKTTTPITPELFFQWKKKKM+ERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD
Sbjct: 224 ERAKVKTTTPITPELFFQWKKKKMDERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 283

Query: 67  AEAYEKYQREEPEADDEQKAKDNSTGRPTSSTSAVDDSEDVLLD-DDDDDDDELDLDELN 126
           AEAYEKYQREE    DE KAKDN+TG P++STSA+DDSEDVLLD DDDDDDDELDLDELN
Sbjct: 284 AEAYEKYQREEEPEADEPKAKDNATGGPSTSTSAIDDSEDVLLDEDDDDDDDELDLDELN 343

Query: 127 ELEASLSRTSIQIREPGIEPS 147
           ELEASLSRTSIQI EPGIE S
Sbjct: 344 ELEASLSRTSIQIGEPGIEAS 364

[Close]

BLAST of CmaCh04G002610 vs. TAIR 10
Match: AT2G20280.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 155.2 bits (391), Expect = 4.0e-38
Identity = 93/144 (64.58%), Postives = 113/144 (78.47%), Query Frame = 0


Query: 7   QRAKVKTTTPITPELFFQWKKKKMNERDAGLAAQQAERAKNDRMSGRELFLANASLFVDD 66
           +RAK++T T +TP LF +WK+KK+ ERDAGLAA QAERAKNDRMSGRELFL+NASLFVDD
Sbjct: 227 ERAKLQTATQMTPALFMEWKRKKIAERDAGLAASQAERAKNDRMSGRELFLSNASLFVDD 286

Query: 67  AEAYEKYQREEPEADDEQKAKDN--STGRPTSSTSAVDDSEDV--LLDDDDDDDDELDLD 126
           AEA E+Y+RE  + + EQKAK+     G   SS  A   S++V    +DDDDDDD+LD+D
Sbjct: 287 AEACEEYEREREQEETEQKAKNKEAEAGTSKSSGDAEQSSKEVNEEEEDDDDDDDDLDMD 346

Query: 127 ELNELEASLSRTSIQIREPGIEPS 147
           EL+ELEASLS+TSIQIREP  E S
Sbjct: 347 ELDELEASLSKTSIQIREPNDEGS 370

The following BLAST results are available for this feature:

BLAST of CmaCh04G002610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SK74	5.6e-37	64.58	Zinc finger CCCH domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q0JHZ2	5.2e-35	62.59	Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa subsp. japonica OX...	[more]
Q54DA5	2.1e-07	36.89	Zinc finger CCCH domain-containing protein 15 homolog OS=Dictyostelium discoideu...	[more]

BLAST of CmaCh04G002610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JHM5	3.9e-65	99.29	zinc finger CCCH domain-containing protein 11-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1FQA9	6.8e-62	96.43	zinc finger CCCH domain-containing protein 11-like OS=Cucurbita moschata OX=3662...	[more]
A0A1S3BDM3	3.1e-54	87.86	zinc finger CCCH domain-containing protein 11 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1H1W4	4.0e-54	87.86	zinc finger CCCH domain-containing protein 11-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1JJ07	5.2e-54	88.57	zinc finger CCCH domain-containing protein 11-like OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of CmaCh04G002610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988591.1	8.0e-65	99.29	zinc finger CCCH domain-containing protein 11-like [Cucurbita maxima]	[more]
XP_023511761.1	1.4e-61	96.43	zinc finger CCCH domain-containing protein 11-like [Cucurbita pepo subsp. pepo]	[more]
XP_022942926.1	1.4e-61	96.43	zinc finger CCCH domain-containing protein 11-like [Cucurbita moschata]	[more]
KAG6600095.1	1.4e-61	96.43	Zinc finger CCCH domain-containing protein 11, partial [Cucurbita argyrosperma s...	[more]
KAG7031850.1	3.4e-55	89.36	Zinc finger CCCH domain-containing protein 11 [Cucurbita argyrosperma subsp. arg...	[more]

BLAST of CmaCh04G002610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20280.1	4.0e-38	64.58	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.20.400.10		coord: 6..61 e-value: 2.5E-12 score: 48.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..89
None	No IPR available	PANTHER	PTHR12681:SF14	ZINC FINGER, CCCH-TYPE, ZC3H15/TMA46 FAMILY-RELATED	coord: 7..141
None	No IPR available	PANTHER	PTHR12681	ZINC FINGER-CONTAINING PROTEIN P48ZNF	coord: 7..141
IPR032378	ZC3H15/TMA46 family, C-terminal	PFAM	PF16543	DFRP_C	coord: 7..79 e-value: 5.9E-15 score: 55.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G002610.1	CmaCh04G002610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding