CmaCh04G001080 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G001080
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	40S ribosomal protein S26
Location	Cma_Chr04: 528857 .. 530975 (+)
RNA-Seq Expression	CmaCh04G001080
Synteny	CmaCh04G001080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCGATTTATATAATGCGTTTGCCGGTTAAAAGCTCCGAACCGTTGCTCAACATTTAACCGCAAAAACCCTAATCGGCTGTTTCTTCTCTCTCTCTCTCTCTCTGCTTCTCAAGACCTAAAGCTTTGAAACAATGGTAAGATCATTCGTCCATTGCTATTTTCTCTGGATATTTTTGTTGTAAATCGTTCTCCATTCATCTTTTTACCACTGGTTCTTCCAGACTTTCAAGCGCAGGAACGGCGGACGTAACAAGCACGGTCGTGGACACGTTAAGTTCATCCGCTGCTCCAACTGCGGCAAGTGCTGCCCCAAGGTTATTCTTGTACTCATCTTTCTCCGCAGTTCTTGCATGAATATATAGATAGTGTTATGGCGGGAGTCAAATCTCTATGGCGCGCAAATGTTTCCGGCGAAATTTGGTCCTTTTGTGTTTAATTAGTTTTTGATTTTGTGCTTGAGTGCAATGCTGGTGTATTTATTATTTAGTTGATCTATCAATTGCGAGCGAGCCAAAGTACAAGTGTCCCCCACGTTCAGGGGATATGATTTTTTATGTAGAATGTTAGTATGTCTATGAGCTTTTCTATTCTTATTGTTGTTAAGAGATTGTTTGCGTTTTTTTTTTTTTTTTTTATAAGTTAAAGAGCTAGATTTTAAAATTCTTTTCGATGAAACACTAAAGTAGCAATTTCTTTTTTTCCAGAATGTGGGGAAAATGTTTCGTTGAAGTTGCAATTCCTGTAAGTTTTCTTAAACTGAAAATCAGTGCTTATGGCTTACCGGTCGGAGGCTTGCCTGGAGGCAAGATTCTAACTTTTCGAAACTTATGGCTTCTTTGGACCATAAGAGGTTTGTACCCCCTATATTGGACGCTTGAGCTTCTCTGAAAGGGCACTAAGGCTTAAAGTCTTTACAATTCATAAAAAGATTAGAAGAATCGTATTATAGTTAGCCCCAAATTTTCAAAAATAATAAAGGTTCAAATATGTATTTAATGCTAATAAATAAGTTGTGGCAATTCTACCACTTAGTATTTGACTATCTAAGCTTCGAACACATTGTAGTTCGGGACAAAGTGACTTTCGAGTGTTCATTGACTATTGAACCACAGCAATTCAATTATACTTTAGCAAAGAGGTGAGAAGATGATTAAATCTAACTTCATGAGTTTTGATTGATGAGAATAGGACAAGGCGATTAAGAGATTTCTTGTGAGGAATATTGTTGAGCAGGCTGCTGTGAGGGATGTCCAAGAAGCCTGTGTCTATGATCGTAAGTTATTCTGTCCATTCATACTATCGTTTTGTTTACTAAATGTATCAACGATTTCTTTATTCAGTGTCTAATATAGTTTTTTGTTTTCTGTACAGAATACACTCTCCCAAAGCTTTATGCCAAGATGCAATACTGTGTTTCCTGTGCTACTCACTCACATGTTGTGAGAGTTCGATCTCGTACTGACAGAAGGAATCGGCAACCACCACAGCGCTTCCTCAGACGCAGGGTTAGTCTTTGCATAAAATATTTATTAACTTTGATTTATAATGAGTTGATCTTGGCATAAAATATTTATAGCTTTGAGTCATCATGAAGTCATGATGTTCACAGTGCACTTGATGAAGTTTGTTCATCTTTATTTACTCTTACTATTTGATGTGCTCAAACTTTTACGGTGGGCAGCCAAAAGAGTATGTGCATCATAATGTTGTCGTTGCTTCTCTATTATCATTGATGGATATGTGAAACTCTTCATAGGATCCAGCCACAATTTTTAAAAGATTAATTAATATGGAGACTTCGGAGACTTTTGCATTTGGTACTTCGTGTTCGCATGCTTGTTATCAAATGAATCCGTAAATCATTATATTTTGACAACTTGGTCAAATGGTTCCCCTACACTTATTGCAGTTTGACATGTCAAGCTCCTTAATTGGATTATGTATCATCTGTCTGTCTAATACTTTGATTCAGCAGCCATACTTGGAGTGGCCTCTGATTCTTTGTTACCTTATTCTGTTTTTGTTTGTTTCAGGATGATCAGCCAAAGCCAGGTCAGCCAGGTCAGCCAGGCCAAGCACCTCGTCCTGTTGGAGCGGGAAATCCTGCTCGTGTGTAA

mRNA sequence

TGGCGATTTATATAATGCGTTTGCCGGTTAAAAGCTCCGAACCGTTGCTCAACATTTAACCGCAAAAACCCTAATCGGCTGTTTCTTCTCTCTCTCTCTCTCTCTGCTTCTCAAGACCTAAAGCTTTGAAACAATGACTTTCAAGCGCAGGAACGGCGGACGTAACAAGCACGGTCGTGGACACGTTAAGTTCATCCGCTGCTCCAACTGCGGCAAGTGCTGCCCCAAGGACAAGGCGATTAAGAGATTTCTTGTGAGGAATATTGTTGAGCAGGCTGCTGTGAGGGATGTCCAAGAAGCCTGTGTCTATGATCAATACACTCTCCCAAAGCTTTATGCCAAGATGCAATACTGTGTTTCCTGTGCTACTCACTCACATGTTGTGAGAGTTCGATCTCGTACTGACAGAAGGAATCGGCAACCACCACAGCGCTTCCTCAGACGCAGGGATGATCAGCCAAAGCCAGGTCAGCCAGGTCAGCCAGGCCAAGCACCTCGTCCTGTTGGAGCGGGAAATCCTGCTCGTGTGTAA

Coding sequence (CDS)

ATGACTTTCAAGCGCAGGAACGGCGGACGTAACAAGCACGGTCGTGGACACGTTAAGTTCATCCGCTGCTCCAACTGCGGCAAGTGCTGCCCCAAGGACAAGGCGATTAAGAGATTTCTTGTGAGGAATATTGTTGAGCAGGCTGCTGTGAGGGATGTCCAAGAAGCCTGTGTCTATGATCAATACACTCTCCCAAAGCTTTATGCCAAGATGCAATACTGTGTTTCCTGTGCTACTCACTCACATGTTGTGAGAGTTCGATCTCGTACTGACAGAAGGAATCGGCAACCACCACAGCGCTTCCTCAGACGCAGGGATGATCAGCCAAAGCCAGGTCAGCCAGGTCAGCCAGGCCAAGCACCTCGTCCTGTTGGAGCGGGAAATCCTGCTCGTGTGTAA

Protein sequence

MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQAPRPVGAGNPARV

Homology

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BLAST of CmaCh04G001080 vs. ExPASy Swiss-Prot
Match: P49206 (40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2)

HSP 1 Score: 206.5 bits (524), Expect = 1.9e-52
Identity = 105/130 (80.77%), Postives = 111/130 (85.38%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA 120
            YTLPKLYAK QYCVSCA HSHVVRVRSRT+RR R PP RF RR++D PK   PGQPGQA
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPK---PGQPGQA 120

Query: 121 PRPVGAGNPA 131
           PRP G G  A
Sbjct: 121 PRPAGPGAAA 127

[Close]

BLAST of CmaCh04G001080 vs. ExPASy Swiss-Prot
Match: Q8LPJ7 (40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2)

HSP 1 Score: 206.5 bits (524), Expect = 1.9e-52
Identity = 105/130 (80.77%), Postives = 111/130 (85.38%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA 120
            YTLPKLYAK QYCVSCA HSHVVRVRSRT+RR R PP RF RR++D PK   PGQPGQA
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPK---PGQPGQA 120

Query: 121 PRPVGAGNPA 131
           PRP G G  A
Sbjct: 121 PRPAGPGAAA 127

[Close]

BLAST of CmaCh04G001080 vs. ExPASy Swiss-Prot
Match: Q9LYK9 (40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 5.6e-52
Identity = 106/130 (81.54%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA 120
            YTLPKLYAK QYCVSCA HSHVVRVRSRT+RR R PP RF RR++D PK   P QPGQA
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPK---PAQPGQA 120

Query: 121 PRPVGAGNPA 131
           PRP G G PA
Sbjct: 121 PRPAG-GAPA 126

[Close]

BLAST of CmaCh04G001080 vs. ExPASy Swiss-Prot
Match: P49216 (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2 SV=2)

HSP 1 Score: 194.5 bits (493), Expect = 7.5e-49
Identity = 98/130 (75.38%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 61  QYTLPKLYAKMQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA 120
            Y LPKLYAK+ +CVSCA H+H+VRVRSR +RR+R+PP+RF RRR+D+P+  +PG  G A
Sbjct: 61  GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPERF-RRREDRPQGPRPG--GGA 120

Query: 121 PRPVGAGNPA 131
           P P GA  PA
Sbjct: 121 PAPGGAAAPA 127

[Close]

BLAST of CmaCh04G001080 vs. ExPASy Swiss-Prot
Match: O45499 (40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.5e-36
Identity = 80/123 (65.04%), Postives = 92/123 (74.80%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y 
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 61  QYTLPKLYAKMQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA 120
           QY LPKLY K+ YC++CA HS VVR RSR  RR+R PP RF +R        +PG PG  
Sbjct: 61  QYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPPPRFGQR----AAAARPGAPG-- 117

Query: 121 PRP 124
           PRP
Sbjct: 121 PRP 117

[Close]

BLAST of CmaCh04G001080 vs. ExPASy TrEMBL
Match: A0A6J1K9H1 (40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111491873 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 4.0e-69
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA 120
           QYTLPKLYAKMQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA
Sbjct: 61  QYTLPKLYAKMQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA 120

Query: 121 PRPVGAGNPARV 133
           PRPVGAGNPARV
Sbjct: 121 PRPVGAGNPARV 132

[Close]

BLAST of CmaCh04G001080 vs. ExPASy TrEMBL
Match: A0A6J1FPQ0 (40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111447105 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.0e-68
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA 120
           QYTLPKLYAKMQYCVSCA HSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA 120

Query: 121 PRPVGAGNPARV 133
           PRPVGAGNPARV
Sbjct: 121 PRPVGAGNPARV 132

[Close]

BLAST of CmaCh04G001080 vs. ExPASy TrEMBL
Match: A0A5A7VIJ0 (40S ribosomal protein S26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold530G00060 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.5e-63
Identity = 125/132 (94.70%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA 120
           QYTLPKLYAKMQYCVSCA HSHVVRVRSRTDRRNRQPPQRF+RRR+DQ K   PGQPGQA
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAK---PGQPGQA 120

Query: 121 PRPVGAGNPARV 133
           PRPVGAGNPARV
Sbjct: 121 PRPVGAGNPARV 129

[Close]

BLAST of CmaCh04G001080 vs. ExPASy TrEMBL
Match: A0A0A0KM45 (40S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_5G220930 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.5e-63
Identity = 125/132 (94.70%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA 120
           QYTLPKLYAKMQYCVSCA HSHVVRVRSRTDRRNRQPPQRF+RRR+DQ K   PGQPGQA
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAK---PGQPGQA 120

Query: 121 PRPVGAGNPARV 133
           PRPVGAGNPARV
Sbjct: 121 PRPVGAGNPARV 129

[Close]

BLAST of CmaCh04G001080 vs. ExPASy TrEMBL
Match: A0A1S3C5M1 (40S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496738 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.5e-63
Identity = 125/132 (94.70%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA 120
           QYTLPKLYAKMQYCVSCA HSHVVRVRSRTDRRNRQPPQRF+RRR+DQ K   PGQPGQA
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAK---PGQPGQA 120

Query: 121 PRPVGAGNPARV 133
           PRPVGAGNPARV
Sbjct: 121 PRPVGAGNPARV 129

[Close]

BLAST of CmaCh04G001080 vs. NCBI nr
Match: XP_022996709.1 (40S ribosomal protein S26-3-like [Cucurbita maxima])

HSP 1 Score: 270.4 bits (690), Expect = 8.2e-69
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA 120
           QYTLPKLYAKMQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA
Sbjct: 61  QYTLPKLYAKMQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA 120

Query: 121 PRPVGAGNPARV 133
           PRPVGAGNPARV
Sbjct: 121 PRPVGAGNPARV 132

[Close]

BLAST of CmaCh04G001080 vs. NCBI nr
Match: XP_022941874.1 (40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_023532350.1 40S ribosomal protein S26-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.1 bits (684), Expect = 4.1e-68
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA 120
           QYTLPKLYAKMQYCVSCA HSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA 120

Query: 121 PRPVGAGNPARV 133
           PRPVGAGNPARV
Sbjct: 121 PRPVGAGNPARV 132

[Close]

BLAST of CmaCh04G001080 vs. NCBI nr
Match: KAG6599946.1 (40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030627.1 40S ribosomal protein S26-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 262.7 bits (670), Expect = 1.7e-66
Identity = 131/135 (97.04%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPK---PGQPGQP 120
           QYTLPKLYAKMQYCVSCA HSHVVRVRSRTDRRNRQPPQRFLRRRDDQPK   PGQPGQP
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQP 120

Query: 121 GQAPRPVGAGNPARV 133
           GQAPRPVGAGNPARV
Sbjct: 121 GQAPRPVGAGNPARV 135

[Close]

BLAST of CmaCh04G001080 vs. NCBI nr
Match: XP_004146441.1 (40S ribosomal protein S26-1 [Cucumis sativus] >XP_008456941.1 PREDICTED: 40S ribosomal protein S26-1 [Cucumis melo] >XP_038891817.1 40S ribosomal protein S26-1-like [Benincasa hispida] >KAA0067538.1 hypothetical protein E6C27_scaffold50G00610 [Cucumis melo var. makuwa] >KGN50730.1 hypothetical protein Csa_005888 [Cucumis sativus] >TYK22411.1 hypothetical protein E5676_scaffold530G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 251.1 bits (640), Expect = 5.2e-63
Identity = 125/132 (94.70%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA 120
           QYTLPKLYAKMQYCVSCA HSHVVRVRSRTDRRNRQPPQRF+RRR+DQ K   PGQPGQA
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQAK---PGQPGQA 120

Query: 121 PRPVGAGNPARV 133
           PRPVGAGNPARV
Sbjct: 121 PRPVGAGNPARV 129

[Close]

BLAST of CmaCh04G001080 vs. NCBI nr
Match: XP_022943123.1 (40S ribosomal protein S26-1-like [Cucurbita moschata] >XP_022987349.1 40S ribosomal protein S26-1-like [Cucurbita maxima] >KAG6600881.1 40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031515.1 40S ribosomal protein S26-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 250.8 bits (639), Expect = 6.7e-63
Identity = 125/132 (94.70%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA 120
           QYTLPKLYAKMQYCVSCA HSHVVRVRSRTDRRNRQPPQRF+RRRDDQPK   PGQPGQA
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRRDDQPK---PGQPGQA 120

Query: 121 PRPVGAGNPARV 133
           PRP GAG PARV
Sbjct: 121 PRPAGAGIPARV 129

[Close]

BLAST of CmaCh04G001080 vs. TAIR 10
Match: AT2G40510.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 206.5 bits (524), Expect = 1.4e-53
Identity = 105/130 (80.77%), Postives = 111/130 (85.38%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA 120
            YTLPKLYAK QYCVSCA HSHVVRVRSRT+RR R PP RF RR++D PK   PGQPGQA
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPK---PGQPGQA 120

Query: 121 PRPVGAGNPA 131
           PRP G G  A
Sbjct: 121 PRPAGPGAAA 127

[Close]

BLAST of CmaCh04G001080 vs. TAIR 10
Match: AT2G40590.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 206.5 bits (524), Expect = 1.4e-53
Identity = 105/130 (80.77%), Postives = 111/130 (85.38%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA 120
            YTLPKLYAK QYCVSCA HSHVVRVRSRT+RR R PP RF RR++D PK   PGQPGQA
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPK---PGQPGQA 120

Query: 121 PRPVGAGNPA 131
           PRP G G  A
Sbjct: 121 PRPAGPGAAA 127

[Close]

BLAST of CmaCh04G001080 vs. TAIR 10
Match: AT3G56340.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 204.9 bits (520), Expect = 4.0e-53
Identity = 106/130 (81.54%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQA 120
            YTLPKLYAK QYCVSCA HSHVVRVRSRT+RR R PP RF RR++D PK   P QPGQA
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPK---PAQPGQA 120

Query: 121 PRPVGAGNPA 131
           PRP G G PA
Sbjct: 121 PRPAG-GAPA 126

The following BLAST results are available for this feature:

BLAST of CmaCh04G001080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49206	1.9e-52	80.77	40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2	[more]
Q8LPJ7	1.9e-52	80.77	40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2	[more]
Q9LYK9	5.6e-52	81.54	40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1	[more]
P49216	7.5e-49	75.38	40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2...	[more]
O45499	2.5e-36	65.04	40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1	[more]

BLAST of CmaCh04G001080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K9H1	4.0e-69	100.00	40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111491873 PE=3 SV=1	[more]
A0A6J1FPQ0	2.0e-68	99.24	40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111447105 PE=3 SV=...	[more]
A0A5A7VIJ0	2.5e-63	94.70	40S ribosomal protein S26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KM45	2.5e-63	94.70	40S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_5G220930 PE=3 SV=1	[more]
A0A1S3C5M1	2.5e-63	94.70	40S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496738 PE=3 SV=1	[more]

BLAST of CmaCh04G001080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022996709.1	8.2e-69	100.00	40S ribosomal protein S26-3-like [Cucurbita maxima]	[more]
XP_022941874.1	4.1e-68	99.24	40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_023532350.1 40S riboso...	[more]
KAG6599946.1	1.7e-66	97.04	40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia] >KA...	[more]
XP_004146441.1	5.2e-63	94.70	40S ribosomal protein S26-1 [Cucumis sativus] >XP_008456941.1 PREDICTED: 40S rib...	[more]
XP_022943123.1	6.7e-63	94.70	40S ribosomal protein S26-1-like [Cucurbita moschata] >XP_022987349.1 40S riboso...	[more]

BLAST of CmaCh04G001080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40510.1	1.4e-53	80.77	Ribosomal protein S26e family protein	[more]
AT2G40590.1	1.4e-53	80.77	Ribosomal protein S26e family protein	[more]
AT3G56340.1	4.0e-53	81.54	Ribosomal protein S26e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038551	Ribosomal protein S26e superfamily	GENE3D	3.30.1740.20	Ribosomal protein S26e	coord: 1..114 e-value: 7.2E-58 score: 196.0
IPR000892	Ribosomal protein S26e	PFAM	PF01283	Ribosomal_S26e	coord: 1..106 e-value: 9.7E-54 score: 180.4
IPR000892	Ribosomal protein S26e	PANTHER	PTHR12538	40S RIBOSOMAL PROTEIN S26	coord: 1..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..110
None	No IPR available	PANTHER	PTHR12538:SF16	40S RIBOSOMAL PROTEIN S26	coord: 1..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G001080.1	CmaCh04G001080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019430	removal of superoxide radicals
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0004784	superoxide dismutase activity