CmaCh04G001080 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TGGCGATTTATATAATGCGTTTGCCGGTTAAAAGCTCCGAACCGTTGCTCAACATTTAACCGCAAAAACCCTAATCGGCTGTTTCTTCTCTCTCTCTCTCTCTCTGCTTCTCAAGACCTAAAGCTTTGAAACAATGGTAAGATCATTCGTCCATTGCTATTTTCTCTGGATATTTTTGTTGTAAATCGTTCTCCATTCATCTTTTTACCACTGGTTCTTCCAGACTTTCAAGCGCAGGAACGGCGGACGTAACAAGCACGGTCGTGGACACGTTAAGTTCATCCGCTGCTCCAACTGCGGCAAGTGCTGCCCCAAGGTTATTCTTGTACTCATCTTTCTCCGCAGTTCTTGCATGAATATATAGATAGTGTTATGGCGGGAGTCAAATCTCTATGGCGCGCAAATGTTTCCGGCGAAATTTGGTCCTTTTGTGTTTAATTAGTTTTTGATTTTGTGCTTGAGTGCAATGCTGGTGTATTTATTATTTAGTTGATCTATCAATTGCGAGCGAGCCAAAGTACAAGTGTCCCCCACGTTCAGGGGATATGATTTTTTATGTAGAATGTTAGTATGTCTATGAGCTTTTCTATTCTTATTGTTGTTAAGAGATTGTTTGCGTTTTTTTTTTTTTTTTTTATAAGTTAAAGAGCTAGATTTTAAAATTCTTTTCGATGAAACACTAAAGTAGCAATTTCTTTTTTTCCAGAATGTGGGGAAAATGTTTCGTTGAAGTTGCAATTCCTGTAAGTTTTCTTAAACTGAAAATCAGTGCTTATGGCTTACCGGTCGGAGGCTTGCCTGGAGGCAAGATTCTAACTTTTCGAAACTTATGGCTTCTTTGGACCATAAGAGGTTTGTACCCCCTATATTGGACGCTTGAGCTTCTCTGAAAGGGCACTAAGGCTTAAAGTCTTTACAATTCATAAAAAGATTAGAAGAATCGTATTATAGTTAGCCCCAAATTTTCAAAAATAATAAAGGTTCAAATATGTATTTAATGCTAATAAATAAGTTGTGGCAATTCTACCACTTAGTATTTGACTATCTAAGCTTCGAACACATTGTAGTTCGGGACAAAGTGACTTTCGAGTGTTCATTGACTATTGAACCACAGCAATTCAATTATACTTTAGCAAAGAGGTGAGAAGATGATTAAATCTAACTTCATGAGTTTTGATTGATGAGAATAGGACAAGGCGATTAAGAGATTTCTTGTGAGGAATATTGTTGAGCAGGCTGCTGTGAGGGATGTCCAAGAAGCCTGTGTCTATGATCGTAAGTTATTCTGTCCATTCATACTATCGTTTTGTTTACTAAATGTATCAACGATTTCTTTATTCAGTGTCTAATATAGTTTTTTGTTTTCTGTACAGAATACACTCTCCCAAAGCTTTATGCCAAGATGCAATACTGTGTTTCCTGTGCTACTCACTCACATGTTGTGAGAGTTCGATCTCGTACTGACAGAAGGAATCGGCAACCACCACAGCGCTTCCTCAGACGCAGGGTTAGTCTTTGCATAAAATATTTATTAACTTTGATTTATAATGAGTTGATCTTGGCATAAAATATTTATAGCTTTGAGTCATCATGAAGTCATGATGTTCACAGTGCACTTGATGAAGTTTGTTCATCTTTATTTACTCTTACTATTTGATGTGCTCAAACTTTTACGGTGGGCAGCCAAAAGAGTATGTGCATCATAATGTTGTCGTTGCTTCTCTATTATCATTGATGGATATGTGAAACTCTTCATAGGATCCAGCCACAATTTTTAAAAGATTAATTAATATGGAGACTTCGGAGACTTTTGCATTTGGTACTTCGTGTTCGCATGCTTGTTATCAAATGAATCCGTAAATCATTATATTTTGACAACTTGGTCAAATGGTTCCCCTACACTTATTGCAGTTTGACATGTCAAGCTCCTTAATTGGATTATGTATCATCTGTCTGTCTAATACTTTGATTCAGCAGCCATACTTGGAGTGGCCTCTGATTCTTTGTTACCTTATTCTGTTTTTGTTTGTTTCAGGATGATCAGCCAAAGCCAGGTCAGCCAGGTCAGCCAGGCCAAGCACCTCGTCCTGTTGGAGCGGGAAATCCTGCTCGTGTGTAA TGGCGATTTATATAATGCGTTTGCCGGTTAAAAGCTCCGAACCGTTGCTCAACATTTAACCGCAAAAACCCTAATCGGCTGTTTCTTCTCTCTCTCTCTCTCTCTGCTTCTCAAGACCTAAAGCTTTGAAACAATGACTTTCAAGCGCAGGAACGGCGGACGTAACAAGCACGGTCGTGGACACGTTAAGTTCATCCGCTGCTCCAACTGCGGCAAGTGCTGCCCCAAGGACAAGGCGATTAAGAGATTTCTTGTGAGGAATATTGTTGAGCAGGCTGCTGTGAGGGATGTCCAAGAAGCCTGTGTCTATGATCAATACACTCTCCCAAAGCTTTATGCCAAGATGCAATACTGTGTTTCCTGTGCTACTCACTCACATGTTGTGAGAGTTCGATCTCGTACTGACAGAAGGAATCGGCAACCACCACAGCGCTTCCTCAGACGCAGGGATGATCAGCCAAAGCCAGGTCAGCCAGGTCAGCCAGGCCAAGCACCTCGTCCTGTTGGAGCGGGAAATCCTGCTCGTGTGTAA ATGACTTTCAAGCGCAGGAACGGCGGACGTAACAAGCACGGTCGTGGACACGTTAAGTTCATCCGCTGCTCCAACTGCGGCAAGTGCTGCCCCAAGGACAAGGCGATTAAGAGATTTCTTGTGAGGAATATTGTTGAGCAGGCTGCTGTGAGGGATGTCCAAGAAGCCTGTGTCTATGATCAATACACTCTCCCAAAGCTTTATGCCAAGATGCAATACTGTGTTTCCTGTGCTACTCACTCACATGTTGTGAGAGTTCGATCTCGTACTGACAGAAGGAATCGGCAACCACCACAGCGCTTCCTCAGACGCAGGGATGATCAGCCAAAGCCAGGTCAGCCAGGTCAGCCAGGCCAAGCACCTCGTCCTGTTGGAGCGGGAAATCCTGCTCGTGTGTAA MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCATHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQAPRPVGAGNPARV Homology
BLAST of CmaCh04G001080 vs. ExPASy Swiss-Prot
Match: P49206 (40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2) HSP 1 Score: 206.5 bits (524), Expect = 1.9e-52 Identity = 105/130 (80.77%), Postives = 111/130 (85.38%), Query Frame = 0
BLAST of CmaCh04G001080 vs. ExPASy Swiss-Prot
Match: Q8LPJ7 (40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2) HSP 1 Score: 206.5 bits (524), Expect = 1.9e-52 Identity = 105/130 (80.77%), Postives = 111/130 (85.38%), Query Frame = 0
BLAST of CmaCh04G001080 vs. ExPASy Swiss-Prot
Match: Q9LYK9 (40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1) HSP 1 Score: 204.9 bits (520), Expect = 5.6e-52 Identity = 106/130 (81.54%), Postives = 112/130 (86.15%), Query Frame = 0
BLAST of CmaCh04G001080 vs. ExPASy Swiss-Prot
Match: P49216 (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2 SV=2) HSP 1 Score: 194.5 bits (493), Expect = 7.5e-49 Identity = 98/130 (75.38%), Postives = 113/130 (86.92%), Query Frame = 0
BLAST of CmaCh04G001080 vs. ExPASy Swiss-Prot
Match: O45499 (40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 2.5e-36 Identity = 80/123 (65.04%), Postives = 92/123 (74.80%), Query Frame = 0
BLAST of CmaCh04G001080 vs. ExPASy TrEMBL
Match: A0A6J1K9H1 (40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111491873 PE=3 SV=1) HSP 1 Score: 270.4 bits (690), Expect = 4.0e-69 Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0
BLAST of CmaCh04G001080 vs. ExPASy TrEMBL
Match: A0A6J1FPQ0 (40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111447105 PE=3 SV=1) HSP 1 Score: 268.1 bits (684), Expect = 2.0e-68 Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0
BLAST of CmaCh04G001080 vs. ExPASy TrEMBL
Match: A0A5A7VIJ0 (40S ribosomal protein S26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold530G00060 PE=3 SV=1) HSP 1 Score: 251.1 bits (640), Expect = 2.5e-63 Identity = 125/132 (94.70%), Postives = 127/132 (96.21%), Query Frame = 0
BLAST of CmaCh04G001080 vs. ExPASy TrEMBL
Match: A0A0A0KM45 (40S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_5G220930 PE=3 SV=1) HSP 1 Score: 251.1 bits (640), Expect = 2.5e-63 Identity = 125/132 (94.70%), Postives = 127/132 (96.21%), Query Frame = 0
BLAST of CmaCh04G001080 vs. ExPASy TrEMBL
Match: A0A1S3C5M1 (40S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496738 PE=3 SV=1) HSP 1 Score: 251.1 bits (640), Expect = 2.5e-63 Identity = 125/132 (94.70%), Postives = 127/132 (96.21%), Query Frame = 0
BLAST of CmaCh04G001080 vs. NCBI nr
Match: XP_022996709.1 (40S ribosomal protein S26-3-like [Cucurbita maxima]) HSP 1 Score: 270.4 bits (690), Expect = 8.2e-69 Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0
BLAST of CmaCh04G001080 vs. NCBI nr
Match: XP_022941874.1 (40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_023532350.1 40S ribosomal protein S26-3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 268.1 bits (684), Expect = 4.1e-68 Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0
BLAST of CmaCh04G001080 vs. NCBI nr
Match: KAG6599946.1 (40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030627.1 40S ribosomal protein S26-1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 262.7 bits (670), Expect = 1.7e-66 Identity = 131/135 (97.04%), Postives = 131/135 (97.04%), Query Frame = 0
BLAST of CmaCh04G001080 vs. NCBI nr
Match: XP_004146441.1 (40S ribosomal protein S26-1 [Cucumis sativus] >XP_008456941.1 PREDICTED: 40S ribosomal protein S26-1 [Cucumis melo] >XP_038891817.1 40S ribosomal protein S26-1-like [Benincasa hispida] >KAA0067538.1 hypothetical protein E6C27_scaffold50G00610 [Cucumis melo var. makuwa] >KGN50730.1 hypothetical protein Csa_005888 [Cucumis sativus] >TYK22411.1 hypothetical protein E5676_scaffold530G00060 [Cucumis melo var. makuwa]) HSP 1 Score: 251.1 bits (640), Expect = 5.2e-63 Identity = 125/132 (94.70%), Postives = 127/132 (96.21%), Query Frame = 0
BLAST of CmaCh04G001080 vs. NCBI nr
Match: XP_022943123.1 (40S ribosomal protein S26-1-like [Cucurbita moschata] >XP_022987349.1 40S ribosomal protein S26-1-like [Cucurbita maxima] >KAG6600881.1 40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031515.1 40S ribosomal protein S26-1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 250.8 bits (639), Expect = 6.7e-63 Identity = 125/132 (94.70%), Postives = 126/132 (95.45%), Query Frame = 0
BLAST of CmaCh04G001080 vs. TAIR 10
Match: AT2G40510.1 (Ribosomal protein S26e family protein ) HSP 1 Score: 206.5 bits (524), Expect = 1.4e-53 Identity = 105/130 (80.77%), Postives = 111/130 (85.38%), Query Frame = 0
BLAST of CmaCh04G001080 vs. TAIR 10
Match: AT2G40590.1 (Ribosomal protein S26e family protein ) HSP 1 Score: 206.5 bits (524), Expect = 1.4e-53 Identity = 105/130 (80.77%), Postives = 111/130 (85.38%), Query Frame = 0
BLAST of CmaCh04G001080 vs. TAIR 10
Match: AT3G56340.1 (Ribosomal protein S26e family protein ) HSP 1 Score: 204.9 bits (520), Expect = 4.0e-53 Identity = 106/130 (81.54%), Postives = 112/130 (86.15%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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