CmaCh03G002690 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh03G002690
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr03: 3682073 .. 3682479 (-)
RNA-Seq ExpressionCmaCh03G002690
SyntenyCmaCh03G002690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGATAACAATTTGTAATTCCAAAAAAATTTCGACTCTACCAAAAATCAAGATTTCATCCCACCCGAATCGATCGAAAGCTTCTCCCTCTTTCAACCGTTTTGGATTTTGGAAGAGAGAGAAGAAGAGGAAGAAGATTAAAGATGACCGTTCGATGGATTGTGATCTACAGTTTCCAGTTTCACTCTTCAAAGACTCCATTTCCATTTCCATTTCCCTTCAAGTTTTTCTAGTTTTTCGAGCCGAAATCTCCCACTTTAAGCTTTCCTCGTCCCTTTTCCATCGCCGTCTTCACTTTGATTCCTTCTAATCAGCAGCGCCAGGTAATTTTCTCTCTATTCTTTCATTTTTTATATGATTTTTCAGTGTTTTTTATTTTTTTGCCTCGTTGATGTTGTTTGA

mRNA sequence

ATGGAGGAGATAACAATTTGTAATTCCAAAAAAATTTCGACTCTACCAAAAATCAAGATTTCATCCCACCCGAATCGATCGAAAGCTTCTCCCTCTTTCAACCGTTTTGGATTTTGGAAGAGAGAGAAGAAGAGGAAGAAGATTAAAGATGACCGTTCGATGGATTGTGATCTACAGTTTCCAGTTTCACTCTTCAAAGACTCCATTTCCATTTCCATTTCCCTTCAATTTTTCGAGCCGAAATCTCCCACTTTAAGCTTTCCTCGTCCCTTTTCCATCGCCGTCTTCACTTTGATTCCTTCTAATCAGCAGCGCCAGTGTTTTTTATTTTTTTGCCTCGTTGATGTTGTTTGA

Coding sequence (CDS)

ATGGAGGAGATAACAATTTGTAATTCCAAAAAAATTTCGACTCTACCAAAAATCAAGATTTCATCCCACCCGAATCGATCGAAAGCTTCTCCCTCTTTCAACCGTTTTGGATTTTGGAAGAGAGAGAAGAAGAGGAAGAAGATTAAAGATGACCGTTCGATGGATTGTGATCTACAGTTTCCAGTTTCACTCTTCAAAGACTCCATTTCCATTTCCATTTCCCTTCAATTTTTCGAGCCGAAATCTCCCACTTTAAGCTTTCCTCGTCCCTTTTCCATCGCCGTCTTCACTTTGATTCCTTCTAATCAGCAGCGCCAGTGTTTTTTATTTTTTTGCCTCGTTGATGTTGTTTGA

Protein sequence

MEEITICNSKKISTLPKIKISSHPNRSKASPSFNRFGFWKREKKRKKIKDDRSMDCDLQFPVSLFKDSISISISLQFFEPKSPTLSFPRPFSIAVFTLIPSNQQRQCFLFFCLVDVV
Homology
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BLAST of CmaCh03G002690 vs. NCBI nr
Match: KAG7033692.1 (hypothetical protein SDJN02_03417, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 196.4 bits (498), Expect = 1.3e-46
Identity = 101/106 (95.28%), Postives = 102/106 (96.23%), Query Frame = 0 

Query: 1   MEEITICNSKKISTLPKIKISSHPNRSKASPSFNRFGFWKREKKRKKIKDDRSMDCDLQF 60
           ME+ITICNSKKISTLPKIKISSHPNRSKASPSFNRFGFWKREKKRKKIKDDRSMDCDLQF
Sbjct: 1   MEKITICNSKKISTLPKIKISSHPNRSKASPSFNRFGFWKREKKRKKIKDDRSMDCDLQF 60

Query: 61  PVSLFKDSISISISLQFFEPKSPTLSFPRPFSIAVFTLIPSNQQRQ 107
           PVSLFKD  SISISLQFFEPKSPTLSFP PFSIA FTLIPSNQQRQ
Sbjct: 61  PVSLFKD--SISISLQFFEPKSPTLSFPLPFSIAGFTLIPSNQQRQ 104

The following BLAST results are available for this feature:
BLAST of CmaCh03G002690 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh03G002690 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh03G002690 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033692.11.3e-4695.28hypothetical protein SDJN02_03417, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh03G002690 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G002690.1CmaCh03G002690.1mRNA