CmaCh03G001950 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G001950
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	30S ribosomal protein S2, chloroplastic
Location	Cma_Chr03: 2942652 .. 2943211 (+)
RNA-Seq Expression	CmaCh03G001950
Synteny	CmaCh03G001950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGGTATTCATATTATAAATCTTACTAGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTAGGGGCAAACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCGGATTCAGTAGCCCGGGCTGCAACAAGGGCTCGGTGTCATTATGTTAATAANAGGAAGTGGGGGGAGAAATGACAAGAAGATATTGGAACATCCATTTGGAAGAGATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAATGTAAAGGTATTCATATTATGAATCTTACTAGAACTGCTCGTTTTTTATCATAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTAGGGGCAAACAATTGTTAATTGTTGGTACCAAAAATAAAGCAGCAGATTCAGTAGCCCGGGCTGCAACAAGAGCTCGGTGTCATTAT

mRNA sequence

ATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGCAAGTAGGGGCAAACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCGGATTCAGTAGCCCGGGCTGCAACAAGGGCTCGGTGTCATTATGAAGTGGGGGGAGAAATGACAAGAAGATATTGGAACATCCATTTGGAAGAGATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAATGTAAAGTTTTTGATGCAGCAAGTAGGGGCAAACAATTGTTAATTGTTGGTACCAAAAATAAAGCAGCAGATTCAGTAGCCCGGGCTGCAACAAGAGCTCGGTGTCATTAT

Coding sequence (CDS)

ATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGCAAGTAGGGGCAAACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCGGATTCAGTAGCCCGGGCTGCAACAAGGGCTCGGTGTCATTATGAAGTGGGGGGAGAAATGACAAGAAGATATTGGAACATCCATTTGGAAGAGATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAATGTAAAGTTTTTGATGCAGCAAGTAGGGGCAAACAATTGTTAATTGTTGGTACCAAAAATAAAGCAGCAGATTCAGTAGCCCGGGCTGCAACAAGAGCTCGGTGTCATTAT

Protein sequence

MMEAGVHFGHGTRKWNPRMAPYISAKRKASRGKQFLIVGTKNKAADSVARAATRARCHYEVGGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCKVFDAASRGKQLLIVGTKNKAADSVARAATRARCHY

Homology

[Close]

BLAST of CmaCh03G001950 vs. ExPASy Swiss-Prot
Match: Q4VZP4 (30S ribosomal protein S2, chloroplastic OS=Cucumis sativus OX=3659 GN=rps2 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.3e-32
Identity = 71/95 (74.74%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 65  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK-------------------- 124
           MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAK K                    
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 125 VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
           VFDAA+RGKQ LIVGTKNKAADSVARAATR RCHY
Sbjct: 61  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHY 95

[Close]

BLAST of CmaCh03G001950 vs. ExPASy Swiss-Prot
Match: P08242 (30S ribosomal protein S2, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps2 PE=1 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.3e-32
Identity = 70/95 (73.68%), Postives = 73/95 (76.84%), Query Frame = 0


Query: 65  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK-------------------- 124
           MTRRYWNI+LEEMMEAGVHFGHGTRKWNPRM+PYISAKCK                    
Sbjct: 1   MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMSPYISAKCKGIHIINLTRTARFLSEACDL 60

Query: 125 VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
           VFDA+SRGKQ LIVGTKNKAADSVARAA RARCHY
Sbjct: 61  VFDASSRGKQFLIVGTKNKAADSVARAAIRARCHY 95

[Close]

BLAST of CmaCh03G001950 vs. ExPASy Swiss-Prot
Match: Q49L09 (30S ribosomal protein S2, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rps2 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-31
Identity = 71/95 (74.74%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 65  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK-------------------- 124
           MTRRYWNI+LEEMMEAGVHFGHGTRKWNPRMAPYISAK K                    
Sbjct: 1   MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTKTARFLSEACDL 60

Query: 125 VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
           VFDAASRGKQ LIVGTKNKAADSVARAA RARCHY
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAAIRARCHY 95

[Close]

BLAST of CmaCh03G001950 vs. ExPASy Swiss-Prot
Match: Q0ZJ31 (30S ribosomal protein S2, chloroplastic OS=Vitis vinifera OX=29760 GN=rps2 PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.6e-31
Identity = 70/95 (73.68%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 65  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK-------------------- 124
           MTRRYWNI+LEEMMEAGVHFGHGTRKWNPRMAPYISAK K                    
Sbjct: 1   MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDL 60

Query: 125 VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
           VFDAASRGKQ LIVGTKNKAADSVARAA +ARCHY
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAAIKARCHY 95

[Close]

BLAST of CmaCh03G001950 vs. ExPASy Swiss-Prot
Match: Q09MI9 (30S ribosomal protein S2, chloroplastic OS=Citrus sinensis OX=2711 GN=rps2 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.4e-31
Identity = 69/95 (72.63%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 65  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK-------------------- 124
           M RRYWNIHLEEMMEAG+HFGHGTRKWNPRMAPYISAK K                    
Sbjct: 1   MARRYWNIHLEEMMEAGIHFGHGTRKWNPRMAPYISAKHKGIHITNLTRTARFLSEACDL 60

Query: 125 VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
           VFDAASRGKQ LIVGTKNKAAD VARAA RARCHY
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADLVARAAIRARCHY 95

[Close]

BLAST of CmaCh03G001950 vs. ExPASy TrEMBL
Match: A0A445EQC5 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A01g002250 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.1e-32
Identity = 89/164 (54.27%), Postives = 95/164 (57.93%), Query Frame = 0


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------ASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYIS KRK                        AS+GKQFL
Sbjct: 45  MMEAGVHFGHGTRKWNPRMAPYISTKRKGIHILNLTRTARFLSEACDLVFDAASKGKQFL 104

Query: 61  IVGTKNKAADSVARAATRARCHYEVGGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMA 120
           IVGTKNKAAD +ARAATRARCHY                             +KW   + 
Sbjct: 105 IVGTKNKAADLIARAATRARCHYV---------------------------NKKW---LG 164

Query: 121 PYISAKCK-VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
                 C  VFDAAS+GKQ LIVGTKNKAAD +ARAATRARCHY
Sbjct: 165 GINETSCDLVFDAASKGKQFLIVGTKNKAADLIARAATRARCHY 178

[Close]

BLAST of CmaCh03G001950 vs. ExPASy TrEMBL
Match: A0A6M3W1W6 (30S ribosomal protein S2, chloroplastic OS=Cucumis melo OX=3656 GN=rps2 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 5.4e-32
Identity = 75/100 (75.00%), Postives = 76/100 (76.00%), Query Frame = 0


Query: 60  EVGGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK--------------- 119
           EVGGEMTRRYWNIHL EMMEAGVHFGHGTRKWNPRMAPYISAK K               
Sbjct: 21  EVGGEMTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLS 80

Query: 120 -----VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
                VFDAA+RGKQ LIVGTKNKAADSVARAATR RCHY
Sbjct: 81  EACDLVFDAATRGKQFLIVGTKNKAADSVARAATRTRCHY 120

[Close]

BLAST of CmaCh03G001950 vs. ExPASy TrEMBL
Match: A0A5H2XMN2 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_897S000100 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 9.1e-32
Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 60  EVGGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAK--CK-VFDAASRGKQLL 119
           EV G+MTRRYWNI+LEEMMEAGVHFGHGTRKWNPRMAPYISAK  C  VFDAASRGKQ L
Sbjct: 5   EVWGKMTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKQACDLVFDAASRGKQFL 64

Query: 120 IVGTKNKAADSVARAATRARCHY 140
           IVGTKNKAADSVARAA +ARCHY
Sbjct: 65  IVGTKNKAADSVARAAIKARCHY 87

[Close]

BLAST of CmaCh03G001950 vs. ExPASy TrEMBL
Match: A0A7D0H320 (30S ribosomal protein S2, chloroplastic OS=Zanthoxylum armatum OX=67938 GN=rps2 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.7e-31
Identity = 73/98 (74.49%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 62  GGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK----------------- 121
           GGEM RRYWNIHLEEMMEAG+HFGHGTRKWNPRMAPYISAK K                 
Sbjct: 40  GGEMARRYWNIHLEEMMEAGIHFGHGTRKWNPRMAPYISAKYKGIHITNLTRTARFLSEA 99

Query: 122 ---VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
              VFDAASRGKQ LIVGTKNKAADSVARAA RARCHY
Sbjct: 100 CDLVFDAASRGKQFLIVGTKNKAADSVARAAIRARCHY 137

[Close]

BLAST of CmaCh03G001950 vs. ExPASy TrEMBL
Match: A0A649X5V8 (30S ribosomal protein S2, chloroplastic OS=Suaeda salsa OX=126914 GN=rps2 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 4.5e-31
Identity = 72/97 (74.23%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 63  GEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK------------------ 122
           GEMTRRYWNI+LEEMMEAGVHFGHGTRKWNPRM+PYISAKCK                  
Sbjct: 39  GEMTRRYWNINLEEMMEAGVHFGHGTRKWNPRMSPYISAKCKGIHILNLTRTARFLSEAC 98

Query: 123 --VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
             VFDA+SRGKQ LIVGTKNKAADSVARAA RARCHY
Sbjct: 99  DLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHY 135

[Close]

BLAST of CmaCh03G001950 vs. NCBI nr
Match: RYR77684.1 (hypothetical protein Ahy_A01g002250 [Arachis hypogaea])

HSP 1 Score: 149.4 bits (376), Expect = 2.2e-32
Identity = 89/164 (54.27%), Postives = 95/164 (57.93%), Query Frame = 0


Query: 1   MMEAGVHFGHGTRKWNPRMAPYISAKRK------------------------ASRGKQFL 60
           MMEAGVHFGHGTRKWNPRMAPYIS KRK                        AS+GKQFL
Sbjct: 45  MMEAGVHFGHGTRKWNPRMAPYISTKRKGIHILNLTRTARFLSEACDLVFDAASKGKQFL 104

Query: 61  IVGTKNKAADSVARAATRARCHYEVGGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMA 120
           IVGTKNKAAD +ARAATRARCHY                             +KW   + 
Sbjct: 105 IVGTKNKAADLIARAATRARCHYV---------------------------NKKW---LG 164

Query: 121 PYISAKCK-VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
                 C  VFDAAS+GKQ LIVGTKNKAAD +ARAATRARCHY
Sbjct: 165 GINETSCDLVFDAASKGKQFLIVGTKNKAADLIARAATRARCHY 178

[Close]

BLAST of CmaCh03G001950 vs. NCBI nr
Match: QJF46372.1 (ribosomal protein S2 [Cucumis melo])

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-31
Identity = 75/100 (75.00%), Postives = 76/100 (76.00%), Query Frame = 0


Query: 60  EVGGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK--------------- 119
           EVGGEMTRRYWNIHL EMMEAGVHFGHGTRKWNPRMAPYISAK K               
Sbjct: 21  EVGGEMTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLS 80

Query: 120 -----VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
                VFDAA+RGKQ LIVGTKNKAADSVARAATR RCHY
Sbjct: 81  EACDLVFDAATRGKQFLIVGTKNKAADSVARAATRTRCHY 120

[Close]

BLAST of CmaCh03G001950 vs. NCBI nr
Match: BBN69347.1 (hypothetical protein Prudu_897S000100 [Prunus dulcis])

HSP 1 Score: 146.4 bits (368), Expect = 1.9e-31
Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 60  EVGGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAK--CK-VFDAASRGKQLL 119
           EV G+MTRRYWNI+LEEMMEAGVHFGHGTRKWNPRMAPYISAK  C  VFDAASRGKQ L
Sbjct: 5   EVWGKMTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKQACDLVFDAASRGKQFL 64

Query: 120 IVGTKNKAADSVARAATRARCHY 140
           IVGTKNKAADSVARAA +ARCHY
Sbjct: 65  IVGTKNKAADSVARAAIKARCHY 87

[Close]

BLAST of CmaCh03G001950 vs. NCBI nr
Match: YP_009917068.1 (ribosomal protein S2 [Zanthoxylum armatum] >QDP70387.1 ribosomal protein S2 [Zanthoxylum armatum])

HSP 1 Score: 144.8 bits (364), Expect = 5.5e-31
Identity = 73/98 (74.49%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 62  GGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK----------------- 121
           GGEM RRYWNIHLEEMMEAG+HFGHGTRKWNPRMAPYISAK K                 
Sbjct: 40  GGEMARRYWNIHLEEMMEAGIHFGHGTRKWNPRMAPYISAKYKGIHITNLTRTARFLSEA 99

Query: 122 ---VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
              VFDAASRGKQ LIVGTKNKAADSVARAA RARCHY
Sbjct: 100 CDLVFDAASRGKQFLIVGTKNKAADSVARAAIRARCHY 137

[Close]

BLAST of CmaCh03G001950 vs. NCBI nr
Match: YP_010034235.1 (ribosomal protein S2 [Syzygium nervosum] >QOW83837.1 ribosomal protein S2 [Syzygium nervosum])

HSP 1 Score: 144.1 bits (362), Expect = 9.4e-31
Identity = 74/98 (75.51%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 62  GGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK----------------- 121
           GGEMTRRYWNI+LEEMMEAGVHFGHGTRKWNPRMAPYISAK K                 
Sbjct: 26  GGEMTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTKTARFLSEA 85

Query: 122 ---VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
              VFDAASRGKQ LIVGTKNKAADSVARAA RARCHY
Sbjct: 86  CDLVFDAASRGKQFLIVGTKNKAADSVARAAIRARCHY 123

[Close]

BLAST of CmaCh03G001950 vs. TAIR 10
Match: ATCG00160.1 (ribosomal protein S2 )

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-30
Identity = 67/95 (70.53%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 65  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK-------------------- 124
           MT+RYWNI LEEMM AGVHFGHGTRKWNPRMAPYISAK K                    
Sbjct: 1   MTKRYWNIDLEEMMRAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 125 VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
           VFDAASRGKQ LIVGTKNKAAD V+RAA RARCHY
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADLVSRAAIRARCHY 95

The following BLAST results are available for this feature:

BLAST of CmaCh03G001950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP4	2.3e-32	74.74	30S ribosomal protein S2, chloroplastic OS=Cucumis sativus OX=3659 GN=rps2 PE=3 ...	[more]
P08242	2.3e-32	73.68	30S ribosomal protein S2, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps2 PE=...	[more]
Q49L09	1.1e-31	74.74	30S ribosomal protein S2, chloroplastic OS=Eucalyptus globulus subsp. globulus O...	[more]
Q0ZJ31	2.6e-31	73.68	30S ribosomal protein S2, chloroplastic OS=Vitis vinifera OX=29760 GN=rps2 PE=3 ...	[more]
Q09MI9	4.4e-31	72.63	30S ribosomal protein S2, chloroplastic OS=Citrus sinensis OX=2711 GN=rps2 PE=3 ...	[more]

BLAST of CmaCh03G001950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A445EQC5	1.1e-32	54.27	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A01g002250 PE=3 SV=1	[more]
A0A6M3W1W6	5.4e-32	75.00	30S ribosomal protein S2, chloroplastic OS=Cucumis melo OX=3656 GN=rps2 PE=3 SV=...	[more]
A0A5H2XMN2	9.1e-32	87.95	Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_897S000100 PE=3 SV=1	[more]
A0A7D0H320	2.7e-31	74.49	30S ribosomal protein S2, chloroplastic OS=Zanthoxylum armatum OX=67938 GN=rps2 ...	[more]
A0A649X5V8	4.5e-31	74.23	30S ribosomal protein S2, chloroplastic OS=Suaeda salsa OX=126914 GN=rps2 PE=3 S...	[more]

BLAST of CmaCh03G001950 vs. NCBI nr


Match Name	E-value	Identity	Description
RYR77684.1	2.2e-32	54.27	hypothetical protein Ahy_A01g002250 [Arachis hypogaea]	[more]
QJF46372.1	1.1e-31	75.00	ribosomal protein S2 [Cucumis melo]	[more]
BBN69347.1	1.9e-31	87.95	hypothetical protein Prudu_897S000100 [Prunus dulcis]	[more]
YP_009917068.1	5.5e-31	74.49	ribosomal protein S2 [Zanthoxylum armatum] >QDP70387.1 ribosomal protein S2 [Zan...	[more]
YP_010034235.1	9.4e-31	75.51	ribosomal protein S2 [Syzygium nervosum] >QOW83837.1 ribosomal protein S2 [Syzyg...	[more]

BLAST of CmaCh03G001950 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00160.1	1.3e-30	70.53	ribosomal protein S2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001865	Ribosomal protein S2	PFAM	PF00318	Ribosomal_S2	coord: 1..28 e-value: 4.1E-8 score: 32.8 coord: 77..102 e-value: 3.0E-7 score: 29.9
IPR001865	Ribosomal protein S2	CDD	cd01425	RPS2	coord: 1..59 e-value: 1.09108E-20 score: 81.0889
None	No IPR available	GENE3D	3.40.50.10490		coord: 1..68 e-value: 1.6E-17 score: 65.3 coord: 69..139 e-value: 6.4E-20 score: 73.2
IPR005706	Ribosomal protein S2, bacteria/mitochondria/plastid	PANTHER	PTHR12534	30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR	coord: 105..139 coord: 29..60 coord: 64..103 coord: 1..28
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00962	RIBOSOMAL_S2_1	coord: 74..85
IPR023591	Ribosomal protein S2, flavodoxin-like domain superfamily	SUPERFAMILY	52313	Ribosomal protein S2	coord: 1..67
IPR023591	Ribosomal protein S2, flavodoxin-like domain superfamily	SUPERFAMILY	52313	Ribosomal protein S2	coord: 74..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G001950.1	CmaCh03G001950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046034	ATP metabolic process
biological_process	GO:0006811	ion transport
biological_process	GO:0034654	nucleobase-containing compound biosynthetic process
biological_process	GO:0006412	translation
cellular_component	GO:0009536	plastid
cellular_component	GO:0016469	proton-transporting two-sector ATPase complex
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0097367	carbohydrate derivative binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016740	transferase activity