CmaCh02G011830 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G011830
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionF-box/WD-40 repeat-containing protein
LocationCma_Chr02: 7000387 .. 7002108 (-)
RNA-Seq ExpressionCmaCh02G011830
SyntenyCmaCh02G011830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATTTTATGGCATTTGAATGCCAGAAGTCTGCCGGGTTTTGTAAGGATTCAAGAGTTATTGTGAAAAATTCTTGTGAGAAACCAACGGGTGGATCGAGTTATTTCAAGCTCAAAGGAAAATCAGCGGGAATTGAATCTGAGAAATCGGAATTTGACTTGGAGAAGGGAGATACTACTTCACTCAGCTCGAAGCAGTTAGGCTGTAGAAATGTTCCCTTGGGTTGTCGGTCAATTACCGACCTTCCTCCTGCAATTATATCTGAGATTCTGAACTGCCTTGATCCGAAGGAGCTTGGCATTGTATCTTGTGTGTCGACGATTCTTCATAGGTTAGCATCTGAGCACCATGTATGGAAGGAATTCTACAATGAAAGATGGGGACTTCCAATTCCAGCTCTACCGGCACCGGTGGCTGCTACTGGATTTTCTGATGAGAAGTCATGGAAAGATATTTTTGTGGAGAGGGAGTTTAGGAGTAAAACTTTTATGGGACGATATAGTATGGAGGTTTTGCATGGTCACACTGAAGCAGTTCGTACGGTTTTTCTTCTGGTTTCTGCAAAACTTATATTTACTTCTGGATATGACTCAATTGTGAGAATCTGGGACTTGGAAGAAGGATTGTCCATTGCTTCATCACGATCACTCGGTTGCACCGTTCGTGCACTTGCGGCCGATACAAAACTACTGGTTGCTGGAGGCACCGATGGTTTTATCCATTGTTGGAAGGCGATAGAAGGGCTTCCACACTTGTTCGATGTGAAAGGCCCTCAAAATCACAATACCGAGTTTCGGCTTTGGGAGCATGAAGGACCCATAACCACTCTTGCTCTGGACCTAACAAGGATTTATAGTGGTTCTTGGGACATGACTGTTCGAGTATGGGATCGTTTTTCACAGAAGTGCTTAAGGATTTTGAGGCATGGTGACTGGGTTTGGGGACTAGTCCCTCATGATACTACTATTGCTAGCACATCAGGCTCAGATGTATATGTCTGGGATACTAACAGTGGGGAGTTGGCTACTGTCATCCATGATGCTCATGTTGGCAAGGCTTATGCTCTGTCACGAAGCCATACAGGGGATTTCCTATTTACTGGAGGGGAAGACGGTGCAATTCACATGTTTGACGTTACTAATCGACATGTTGATACAAGCGCTCAACTTGTTGGATCATGGATTCCTCATTCAGGACCAGTTTATTCACTAGCATTTGAGTTTCCATGGCTGGTTTCAGCGTCAAGTGATGGGAAACTCTCGTTGATCGACGTGAGAGCACTGCTTAGGACAAGGAAAAGAACTCTGTGGAAGAGAGATTCTGCAGGGCAGCATGTTGGTAGGAGTATTGGTGTGGAGCCTCCTCAGAGAATGTTGCATGGATTTGGGAGCAATTTGTTCGGTGTGGACATTGGTTTGGATCGTATTGTTTGTGGAGGAGAGGAAGGTGTTGTGAGGATCTGGAACTTCTCGCAGGCTCTGGAAACCGAACGGAGGGCTCGTGCACTAAGAGGGATTAGGTTAGAGAATAGAATGAGACGGCGTAGGCTTCAAATAGAAATGAACACAAAAGGTGGTGGTGGTGGTCCTGGTGGTGGTGGTGGTGGTGGTCGTGGTCGGAGTGATCGGTGCTCGGTTGCAGCAAAGAAAAAACTAATGAACAGCGATAATGTTAGTGTTTGGCACAACAAACGCGGGGTGAGCGGGAAGCTCAAAGCTTAG

mRNA sequence

ATGTATTTTATGGCATTTGAATGCCAGAAGTCTGCCGGGTTTTGTAAGGATTCAAGAGTTATTGTGAAAAATTCTTGTGAGAAACCAACGGGTGGATCGAGTTATTTCAAGCTCAAAGGAAAATCAGCGGGAATTGAATCTGAGAAATCGGAATTTGACTTGGAGAAGGGAGATACTACTTCACTCAGCTCGAAGCAGTTAGGCTGTAGAAATGTTCCCTTGGGTTGTCGGTCAATTACCGACCTTCCTCCTGCAATTATATCTGAGATTCTGAACTGCCTTGATCCGAAGGAGCTTGGCATTGTATCTTGTGTGTCGACGATTCTTCATAGGTTAGCATCTGAGCACCATGTATGGAAGGAATTCTACAATGAAAGATGGGGACTTCCAATTCCAGCTCTACCGGCACCGGTGGCTGCTACTGGATTTTCTGATGAGAAGTCATGGAAAGATATTTTTGTGGAGAGGGAGTTTAGGAGTAAAACTTTTATGGGACGATATAGTATGGAGGTTTTGCATGGTCACACTGAAGCAGTTCGTACGGTTTTTCTTCTGGTTTCTGCAAAACTTATATTTACTTCTGGATATGACTCAATTGTGAGAATCTGGGACTTGGAAGAAGGATTGTCCATTGCTTCATCACGATCACTCGGTTGCACCGTTCGTGCACTTGCGGCCGATACAAAACTACTGGTTGCTGGAGGCACCGATGGTTTTATCCATTGTTGGAAGGCGATAGAAGGGCTTCCACACTTGTTCGATGTGAAAGGCCCTCAAAATCACAATACCGAGTTTCGGCTTTGGGAGCATGAAGGACCCATAACCACTCTTGCTCTGGACCTAACAAGGATTTATAGTGGTTCTTGGGACATGACTGTTCGAGTATGGGATCGTTTTTCACAGAAGTGCTTAAGGATTTTGAGGCATGGTGACTGGGTTTGGGGACTAGTCCCTCATGATACTACTATTGCTAGCACATCAGGCTCAGATGTATATGTCTGGGATACTAACAGTGGGGAGTTGGCTACTGTCATCCATGATGCTCATGTTGGCAAGGCTTATGCTCTGTCACGAAGCCATACAGGGGATTTCCTATTTACTGGAGGGGAAGACGGTGCAATTCACATGTTTGACGTTACTAATCGACATGTTGATACAAGCGCTCAACTTGTTGGATCATGGATTCCTCATTCAGGACCAGTTTATTCACTAGCATTTGAGTTTCCATGGCTGGTTTCAGCGTCAAGTGATGGGAAACTCTCGTTGATCGACGTGAGAGCACTGCTTAGGACAAGGAAAAGAACTCTGTGGAAGAGAGATTCTGCAGGGCAGCATGTTGGTAGGAGTATTGGTGTGGAGCCTCCTCAGAGAATGTTGCATGGATTTGGGAGCAATTTGTTCGGTGTGGACATTGGTTTGGATCGTATTGTTTGTGGAGGAGAGGAAGGTGTTGTGAGGATCTGGAACTTCTCGCAGGCTCTGGAAACCGAACGGAGGGCTCGTGCACTAAGAGGGATTAGGTTAGAGAATAGAATGAGACGGCGTAGGCTTCAAATAGAAATGAACACAAAAGGTGGTGGTGGTGGTCCTGGTGGTGGTGGTGGTGGTGGTCGTGGTCGGAGTGATCGGTGCTCGGTTGCAGCAAAGAAAAAACTAATGAACAGCGATAATGTTAGTGTTTGGCACAACAAACGCGGGGTGAGCGGGAAGCTCAAAGCTTAG

Coding sequence (CDS)

ATGTATTTTATGGCATTTGAATGCCAGAAGTCTGCCGGGTTTTGTAAGGATTCAAGAGTTATTGTGAAAAATTCTTGTGAGAAACCAACGGGTGGATCGAGTTATTTCAAGCTCAAAGGAAAATCAGCGGGAATTGAATCTGAGAAATCGGAATTTGACTTGGAGAAGGGAGATACTACTTCACTCAGCTCGAAGCAGTTAGGCTGTAGAAATGTTCCCTTGGGTTGTCGGTCAATTACCGACCTTCCTCCTGCAATTATATCTGAGATTCTGAACTGCCTTGATCCGAAGGAGCTTGGCATTGTATCTTGTGTGTCGACGATTCTTCATAGGTTAGCATCTGAGCACCATGTATGGAAGGAATTCTACAATGAAAGATGGGGACTTCCAATTCCAGCTCTACCGGCACCGGTGGCTGCTACTGGATTTTCTGATGAGAAGTCATGGAAAGATATTTTTGTGGAGAGGGAGTTTAGGAGTAAAACTTTTATGGGACGATATAGTATGGAGGTTTTGCATGGTCACACTGAAGCAGTTCGTACGGTTTTTCTTCTGGTTTCTGCAAAACTTATATTTACTTCTGGATATGACTCAATTGTGAGAATCTGGGACTTGGAAGAAGGATTGTCCATTGCTTCATCACGATCACTCGGTTGCACCGTTCGTGCACTTGCGGCCGATACAAAACTACTGGTTGCTGGAGGCACCGATGGTTTTATCCATTGTTGGAAGGCGATAGAAGGGCTTCCACACTTGTTCGATGTGAAAGGCCCTCAAAATCACAATACCGAGTTTCGGCTTTGGGAGCATGAAGGACCCATAACCACTCTTGCTCTGGACCTAACAAGGATTTATAGTGGTTCTTGGGACATGACTGTTCGAGTATGGGATCGTTTTTCACAGAAGTGCTTAAGGATTTTGAGGCATGGTGACTGGGTTTGGGGACTAGTCCCTCATGATACTACTATTGCTAGCACATCAGGCTCAGATGTATATGTCTGGGATACTAACAGTGGGGAGTTGGCTACTGTCATCCATGATGCTCATGTTGGCAAGGCTTATGCTCTGTCACGAAGCCATACAGGGGATTTCCTATTTACTGGAGGGGAAGACGGTGCAATTCACATGTTTGACGTTACTAATCGACATGTTGATACAAGCGCTCAACTTGTTGGATCATGGATTCCTCATTCAGGACCAGTTTATTCACTAGCATTTGAGTTTCCATGGCTGGTTTCAGCGTCAAGTGATGGGAAACTCTCGTTGATCGACGTGAGAGCACTGCTTAGGACAAGGAAAAGAACTCTGTGGAAGAGAGATTCTGCAGGGCAGCATGTTGGTAGGAGTATTGGTGTGGAGCCTCCTCAGAGAATGTTGCATGGATTTGGGAGCAATTTGTTCGGTGTGGACATTGGTTTGGATCGTATTGTTTGTGGAGGAGAGGAAGGTGTTGTGAGGATCTGGAACTTCTCGCAGGCTCTGGAAACCGAACGGAGGGCTCGTGCACTAAGAGGGATTAGGTTAGAGAATAGAATGAGACGGCGTAGGCTTCAAATAGAAATGAACACAAAAGGTGGTGGTGGTGGTCCTGGTGGTGGTGGTGGTGGTGGTCGTGGTCGGAGTGATCGGTGCTCGGTTGCAGCAAAGAAAAAACTAATGAACAGCGATAATGTTAGTGTTTGGCACAACAAACGCGGGGTGAGCGGGAAGCTCAAAGCTTAG

Protein sequence

MYFMAFECQKSAGFCKDSRVIVKNSCEKPTGGSSYFKLKGKSAGIESEKSEFDLEKGDTTSLSSKQLGCRNVPLGCRSITDLPPAIISEILNCLDPKELGIVSCVSTILHRLASEHHVWKEFYNERWGLPIPALPAPVAATGFSDEKSWKDIFVEREFRSKTFMGRYSMEVLHGHTEAVRTVFLLVSAKLIFTSGYDSIVRIWDLEEGLSIASSRSLGCTVRALAADTKLLVAGGTDGFIHCWKAIEGLPHLFDVKGPQNHNTEFRLWEHEGPITTLALDLTRIYSGSWDMTVRVWDRFSQKCLRILRHGDWVWGLVPHDTTIASTSGSDVYVWDTNSGELATVIHDAHVGKAYALSRSHTGDFLFTGGEDGAIHMFDVTNRHVDTSAQLVGSWIPHSGPVYSLAFEFPWLVSASSDGKLSLIDVRALLRTRKRTLWKRDSAGQHVGRSIGVEPPQRMLHGFGSNLFGVDIGLDRIVCGGEEGVVRIWNFSQALETERRARALRGIRLENRMRRRRLQIEMNTKGGGGGPGGGGGGGRGRSDRCSVAAKKKLMNSDNVSVWHNKRGVSGKLKA
Homology
BLAST of CmaCh02G011830 vs. ExPASy Swiss-Prot
Match: Q94AD8 (F-box/WD-40 repeat-containing protein At5g21040 OS=Arabidopsis thaliana OX=3702 GN=At5g21040 PE=2 SV=1)

HSP 1 Score: 706.8 bits (1823), Expect = 2.0e-202
Identity = 354/570 (62.11%), Postives = 418/570 (73.33%), Query Frame = 0

Query: 4   MAFECQKSAGFCKDSRVIVKNSCEKPTGGSSYFKLKGKSAGIESEKSEFDLEKGDTTSLS 63
           M FECQ+      D R       E     +        S  I + K     +KG      
Sbjct: 1   MEFECQERLEAANDQR------SESGLLNTDLRIGNDGSVEIPNVKLCCQKKKGTLVPSG 60

Query: 64  SKQLGCRNVPLGCRSITDLPPAIISEILNCLDPKELGIVSCVSTILHRLASEHHVWKEFY 123
           SKQL   +  L   +I DLP A+ISEILNCLDPKELG+VSCVST LHRLASEHH WKEFY
Sbjct: 61  SKQL-LSDKDLS-TTIIDLPQALISEILNCLDPKELGLVSCVSTYLHRLASEHHAWKEFY 120

Query: 124 NERWGLPIPALPAPVAATGFSDEKSWKDIFVEREFRSKTFMGRYSMEVLHGHTEAVRTVF 183
            ERWGLP+       A++G SDE+SWKD+FVEREFRS+TF+GRYS++ L+GHTEAVRTVF
Sbjct: 121 RERWGLPV---VFGAASSGLSDERSWKDLFVEREFRSRTFLGRYSIDTLYGHTEAVRTVF 180

Query: 184 LLVSAKLIFTSGYDSIVRIWDLEEGLSIASSRSLGCTVRALAADTKLLVAGGTDGFIHCW 243
           LL SAKL+FTSGYDSIVR+WD+EEGLSIA+S+ LGCT+RALAADTKLLVAGGTDGFIHCW
Sbjct: 181 LLASAKLVFTSGYDSIVRMWDMEEGLSIAASKPLGCTIRALAADTKLLVAGGTDGFIHCW 240

Query: 244 KAIEGLPHLFDVKGPQNHNTEFRLWEHEGPITTLALDLTRIYSGSWDMTVRVWDRFSQKC 303
           K+++GL +LFD+ G Q   TEFRLW HEGPIT+LALD+T I+SGSWDM+VR+WDR S KC
Sbjct: 241 KSLDGLRNLFDLTGFQKEKTEFRLWGHEGPITSLALDMTSIFSGSWDMSVRIWDRSSMKC 300

Query: 304 LRILRHGDWVWGLVPHDTTIASTSGSDVYVWDTNSGELATVIHDAHVGKAYALSRSHTGD 363
           ++ LRH DWVWGL PH+TT+ASTSGSDVY+WD +S     +I DAH G  Y+L+RSHTGD
Sbjct: 301 VKTLRHSDWVWGLAPHETTLASTSGSDVYIWDVSSETPLAIIPDAHEGTTYSLARSHTGD 360

Query: 364 FLFTGGEDGAIHMFDVTNRHVDTSAQLVGSWIPHSGPVYSLAFEFPWLVSASSDGKLSLI 423
           FLFTGGEDG I MF++     +TS  L+  W+PH+ PVYSL+FEFPWLVSAS DGKL+LI
Sbjct: 361 FLFTGGEDGGIKMFEIRRYGSETSVVLISQWMPHTSPVYSLSFEFPWLVSASGDGKLALI 420

Query: 424 DVRALLRTRKRTLWKRDSAGQHVGRSIGVEPPQRMLHGFGSNLFGVDIGLDRIVCGGEEG 483
           DVR LL+T +    KR S       S  VEPPQRMLHGFGSNLF VD+G DRIVCGGEEG
Sbjct: 421 DVRKLLKTNRCAYSKRIS-------SSTVEPPQRMLHGFGSNLFSVDVGYDRIVCGGEEG 480

Query: 484 VVRIWNFSQALETERRARALRGIRLENRMRRRRLQIEMNTKGGGGGPGGGGGGGRGRSDR 543
            VRIWNF+QALE ERR RAL+G+R ENRMRRRR+Q+EMN K              GR D+
Sbjct: 481 TVRIWNFTQALEIERRTRALKGMRHENRMRRRRMQMEMNAK-------------NGRPDQ 539

Query: 544 CSVAAKKKLMNSDNVSVWHNKRGVSGKLKA 574
           CS+AA K  +N +    WH+KR  SGK KA
Sbjct: 541 CSIAAHKNPINGERNRAWHSKRRASGKAKA 539

BLAST of CmaCh02G011830 vs. ExPASy Swiss-Prot
Match: D4AM37 (Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) OX=663331 GN=sconB PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.2e-20
Identity = 85/307 (27.69%), Postives = 127/307 (41.37%), Query Frame = 0

Query: 79  ITDLPPAIISEILNCLDPKELGIVSCVSTILHRLASEHHVWKEFYNER---------WGL 138
           +T LPP I  +IL+ LD   L   + VS     LA +  VW     +          WGL
Sbjct: 198 VTALPPEISFKILSYLDTASLCSAAQVSHSWRALADDDVVWHRMCEQHIDRKCEKCGWGL 257

Query: 139 PI--------PALPAPVAATG---------FSDEKSWKDIFVER-EFRSKTFMGRYSMEV 198
           P+              + A G             + WK ++++R +  +    GR +  +
Sbjct: 258 PMLDRKRLKDTKRQVQLRAAGKEIAPNQRPQQQHRPWKAVYMDRFKVGTNWKYGRCTTTI 317

Query: 199 LHGHTEAVRTVFLLVSAKLIFTSGYDSIVRIWDLEEGLSIASSRSLGCTVRALAADTKLL 258
             GHT  V  + L     ++ T  YD+ ++IWD+E G  I + R    T+R L  D   L
Sbjct: 318 FRGHTNGV--MCLQFDDNILATGSYDATIKIWDIETGKEIRTLRGHESTIRCLQFDDTKL 377

Query: 259 VAGGTDGFIHCWKAIEGLPHLFDVKGPQNHNTEFRLWEHEGPITTLALDLTRIYSGSWDM 318
           ++G  D  I  W    G                     H+G +  L  D T + SGS D 
Sbjct: 378 ISGSLDRTIKVWNWRSG-------------ECISTYTGHQGGVLCLHFDSTTLASGSKDN 437

Query: 319 TVRVWDRFSQKCLRILR-HGDWVWGLVPHDTTIASTSGSD---VYVWDTNSGELATVIHD 353
           T+++W+ F  K  RILR H DWV  +     +    S SD   V +WD ++G+    IH 
Sbjct: 438 TIKIWN-FHDKSTRILRGHADWVNSVKLDTASRTVFSASDDLTVRIWDLDTGK---CIHS 485

BLAST of CmaCh02G011830 vs. ExPASy Swiss-Prot
Match: C5FP68 (Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) OX=554155 GN=sconB PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.2e-20
Identity = 85/305 (27.87%), Postives = 127/305 (41.64%), Query Frame = 0

Query: 79  ITDLPPAIISEILNCLDPKELGIVSCVSTILHRLASEHHVWKEFYNER---------WGL 138
           +T LPP I  +IL+ LD   L   + VS     LA +  VW     +          WGL
Sbjct: 215 VTALPPEISFKILSYLDTASLCNAAQVSRNWRHLADDDVVWHRMCEQHIDRKCEKCGWGL 274

Query: 139 PI----------------PALPAPVAATGFSDEKSWKDIFVER-EFRSKTFMGRYSMEVL 198
           P+                 A    V        + WK ++++R +  +    GR +  + 
Sbjct: 275 PMLDRKRLKDTKRQVQLRAAGKEAVTGRQQQQHRPWKAVYMDRFKVGTNWKYGRCTTTIF 334

Query: 199 HGHTEAVRTVFLLVSAKLIFTSGYDSIVRIWDLEEGLSIASSRSLGCTVRALAADTKLLV 258
            GHT  V  + L     ++ T  YD+ ++IWD+E G  I + R    T+R L  D   L+
Sbjct: 335 RGHTNGV--MCLQFDDNILATGSYDATIKIWDIETGKEIRTLRGHESTIRCLQFDDTKLI 394

Query: 259 AGGTDGFIHCWKAIEGLPHLFDVKGPQNHNTEFRLWEHEGPITTLALDLTRIYSGSWDMT 318
           +G  D  I  W    G                     H+G +  L  D T + SGS D T
Sbjct: 395 SGSLDRTIKVWSWRSG-------------ECISTYTGHQGGVLCLHFDSTTLASGSKDNT 454

Query: 319 VRVWDRFSQKCLRILR-HGDWVWGLVPHDT---TIASTSGS-DVYVWDTNSGELATVIHD 353
           +++W+ F  K  +ILR H DWV   V  DT   T+ S S    V +WD ++G+     + 
Sbjct: 455 IKIWN-FQDKSTQILRGHTDWV-NAVKLDTASRTVFSASDDLTVRIWDLDTGKCIHT-YA 501

BLAST of CmaCh02G011830 vs. ExPASy Swiss-Prot
Match: D4D8P3 (Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Trichophyton verrucosum (strain HKI 0517) OX=663202 GN=sconB PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.2e-20
Identity = 85/307 (27.69%), Postives = 127/307 (41.37%), Query Frame = 0

Query: 79  ITDLPPAIISEILNCLDPKELGIVSCVSTILHRLASEHHVWKEFYNER---------WGL 138
           +T LPP I  +IL+ LD   L   + VS     LA +  VW     +          WGL
Sbjct: 198 VTALPPEISFKILSYLDTASLCSAAQVSHSWRALADDDVVWHRMCEQHIDRKCEKCGWGL 257

Query: 139 PI--------PALPAPVAATG---------FSDEKSWKDIFVER-EFRSKTFMGRYSMEV 198
           P+              + A G             + WK ++++R +  +    GR +  +
Sbjct: 258 PMLDRKRLKDTKRQVQLRAAGKEIAPNQRPQQQHRPWKAVYMDRFKVGTNWKYGRCTTTI 317

Query: 199 LHGHTEAVRTVFLLVSAKLIFTSGYDSIVRIWDLEEGLSIASSRSLGCTVRALAADTKLL 258
             GHT  V  + L     ++ T  YD+ ++IWD+E G  I + R    T+R L  D   L
Sbjct: 318 FRGHTNGV--MCLQFDDNILATGSYDATIKIWDIETGKEIRTLRGHESTIRCLQFDDTKL 377

Query: 259 VAGGTDGFIHCWKAIEGLPHLFDVKGPQNHNTEFRLWEHEGPITTLALDLTRIYSGSWDM 318
           ++G  D  I  W    G                     H+G +  L  D T + SGS D 
Sbjct: 378 ISGSLDRTIKVWNWRSG-------------ECISTYTGHQGGVLCLHFDSTTLASGSKDN 437

Query: 319 TVRVWDRFSQKCLRILR-HGDWVWGLVPHDTTIASTSGSD---VYVWDTNSGELATVIHD 353
           T+++W+ F  K  RILR H DWV  +     +    S SD   V +WD ++G+    IH 
Sbjct: 438 TIKIWN-FHDKSTRILRGHADWVNSVKLDTASRTVFSASDDLTVRIWDLDTGK---CIHS 485

BLAST of CmaCh02G011830 vs. ExPASy Swiss-Prot
Match: Q8YRI1 (Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=alr3466 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.9e-17
Identity = 73/262 (27.86%), Postives = 121/262 (46.18%), Query Frame = 0

Query: 172  LHGHTEAVRTVFLLVSAKLIFTSGYDSIVRIWDLEEGLSIASSRSLGCTVRAL--AADTK 231
            L GHT  VR+V       ++ + G D IVR+WD+  G  + + +     VR L  + +  
Sbjct: 1070 LQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGV 1129

Query: 232  LLVAGGTDGFIHCWKAIEGLPHLFDVKGPQNHNTEFRLWEHEGPITTLALDLTRIYSGSW 291
             L  G +D  +  W  I     L+ ++G  N       W +       + D   + SGS 
Sbjct: 1130 TLANGSSDQIVRLWD-ISSKKCLYTLQGHTN-------WVN---AVAFSPDGATLASGSG 1189

Query: 292  DMTVRVWDRFSQKCLRILR-HGDWVWGLV--PHDTTIAS-TSGSDVYVWDTNSGELATVI 351
            D TVR+WD  S KCL IL+ H  WV  +V  P  +T+AS +S   V +W+ NS +     
Sbjct: 1190 DQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTF 1249

Query: 352  HDAHVGKAYALSRSHTGDFLFTGGEDGAIHMFDVTNRHVDTSAQLVGSWIPHSGPVYSLA 411
               H     ++  +  G  L +G  D  + ++D+      +S++ + ++  H+  V S+A
Sbjct: 1250 -QGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDI------SSSKCLHTFQGHTNWVNSVA 1309

Query: 412  F--EFPWLVSASSDGKLSLIDV 426
            F  +   L S S D  + L ++
Sbjct: 1310 FNPDGSMLASGSGDQTVRLWEI 1313

BLAST of CmaCh02G011830 vs. TAIR 10
Match: AT5G21040.1 (F-box protein 2 )

HSP 1 Score: 706.8 bits (1823), Expect = 1.4e-203
Identity = 354/570 (62.11%), Postives = 418/570 (73.33%), Query Frame = 0

Query: 4   MAFECQKSAGFCKDSRVIVKNSCEKPTGGSSYFKLKGKSAGIESEKSEFDLEKGDTTSLS 63
           M FECQ+      D R       E     +        S  I + K     +KG      
Sbjct: 1   MEFECQERLEAANDQR------SESGLLNTDLRIGNDGSVEIPNVKLCCQKKKGTLVPSG 60

Query: 64  SKQLGCRNVPLGCRSITDLPPAIISEILNCLDPKELGIVSCVSTILHRLASEHHVWKEFY 123
           SKQL   +  L   +I DLP A+ISEILNCLDPKELG+VSCVST LHRLASEHH WKEFY
Sbjct: 61  SKQL-LSDKDLS-TTIIDLPQALISEILNCLDPKELGLVSCVSTYLHRLASEHHAWKEFY 120

Query: 124 NERWGLPIPALPAPVAATGFSDEKSWKDIFVEREFRSKTFMGRYSMEVLHGHTEAVRTVF 183
            ERWGLP+       A++G SDE+SWKD+FVEREFRS+TF+GRYS++ L+GHTEAVRTVF
Sbjct: 121 RERWGLPV---VFGAASSGLSDERSWKDLFVEREFRSRTFLGRYSIDTLYGHTEAVRTVF 180

Query: 184 LLVSAKLIFTSGYDSIVRIWDLEEGLSIASSRSLGCTVRALAADTKLLVAGGTDGFIHCW 243
           LL SAKL+FTSGYDSIVR+WD+EEGLSIA+S+ LGCT+RALAADTKLLVAGGTDGFIHCW
Sbjct: 181 LLASAKLVFTSGYDSIVRMWDMEEGLSIAASKPLGCTIRALAADTKLLVAGGTDGFIHCW 240

Query: 244 KAIEGLPHLFDVKGPQNHNTEFRLWEHEGPITTLALDLTRIYSGSWDMTVRVWDRFSQKC 303
           K+++GL +LFD+ G Q   TEFRLW HEGPIT+LALD+T I+SGSWDM+VR+WDR S KC
Sbjct: 241 KSLDGLRNLFDLTGFQKEKTEFRLWGHEGPITSLALDMTSIFSGSWDMSVRIWDRSSMKC 300

Query: 304 LRILRHGDWVWGLVPHDTTIASTSGSDVYVWDTNSGELATVIHDAHVGKAYALSRSHTGD 363
           ++ LRH DWVWGL PH+TT+ASTSGSDVY+WD +S     +I DAH G  Y+L+RSHTGD
Sbjct: 301 VKTLRHSDWVWGLAPHETTLASTSGSDVYIWDVSSETPLAIIPDAHEGTTYSLARSHTGD 360

Query: 364 FLFTGGEDGAIHMFDVTNRHVDTSAQLVGSWIPHSGPVYSLAFEFPWLVSASSDGKLSLI 423
           FLFTGGEDG I MF++     +TS  L+  W+PH+ PVYSL+FEFPWLVSAS DGKL+LI
Sbjct: 361 FLFTGGEDGGIKMFEIRRYGSETSVVLISQWMPHTSPVYSLSFEFPWLVSASGDGKLALI 420

Query: 424 DVRALLRTRKRTLWKRDSAGQHVGRSIGVEPPQRMLHGFGSNLFGVDIGLDRIVCGGEEG 483
           DVR LL+T +    KR S       S  VEPPQRMLHGFGSNLF VD+G DRIVCGGEEG
Sbjct: 421 DVRKLLKTNRCAYSKRIS-------SSTVEPPQRMLHGFGSNLFSVDVGYDRIVCGGEEG 480

Query: 484 VVRIWNFSQALETERRARALRGIRLENRMRRRRLQIEMNTKGGGGGPGGGGGGGRGRSDR 543
            VRIWNF+QALE ERR RAL+G+R ENRMRRRR+Q+EMN K              GR D+
Sbjct: 481 TVRIWNFTQALEIERRTRALKGMRHENRMRRRRMQMEMNAK-------------NGRPDQ 539

Query: 544 CSVAAKKKLMNSDNVSVWHNKRGVSGKLKA 574
           CS+AA K  +N +    WH+KR  SGK KA
Sbjct: 541 CSIAAHKNPINGERNRAWHSKRRASGKAKA 539

BLAST of CmaCh02G011830 vs. TAIR 10
Match: AT5G21040.2 (F-box protein 2 )

HSP 1 Score: 706.8 bits (1823), Expect = 1.4e-203
Identity = 354/570 (62.11%), Postives = 418/570 (73.33%), Query Frame = 0

Query: 4   MAFECQKSAGFCKDSRVIVKNSCEKPTGGSSYFKLKGKSAGIESEKSEFDLEKGDTTSLS 63
           M FECQ+      D R       E     +        S  I + K     +KG      
Sbjct: 1   MEFECQERLEAANDQR------SESGLLNTDLRIGNDGSVEIPNVKLCCQKKKGTLVPSG 60

Query: 64  SKQLGCRNVPLGCRSITDLPPAIISEILNCLDPKELGIVSCVSTILHRLASEHHVWKEFY 123
           SKQL   +  L   +I DLP A+ISEILNCLDPKELG+VSCVST LHRLASEHH WKEFY
Sbjct: 61  SKQL-LSDKDLS-TTIIDLPQALISEILNCLDPKELGLVSCVSTYLHRLASEHHAWKEFY 120

Query: 124 NERWGLPIPALPAPVAATGFSDEKSWKDIFVEREFRSKTFMGRYSMEVLHGHTEAVRTVF 183
            ERWGLP+       A++G SDE+SWKD+FVEREFRS+TF+GRYS++ L+GHTEAVRTVF
Sbjct: 121 RERWGLPV---VFGAASSGLSDERSWKDLFVEREFRSRTFLGRYSIDTLYGHTEAVRTVF 180

Query: 184 LLVSAKLIFTSGYDSIVRIWDLEEGLSIASSRSLGCTVRALAADTKLLVAGGTDGFIHCW 243
           LL SAKL+FTSGYDSIVR+WD+EEGLSIA+S+ LGCT+RALAADTKLLVAGGTDGFIHCW
Sbjct: 181 LLASAKLVFTSGYDSIVRMWDMEEGLSIAASKPLGCTIRALAADTKLLVAGGTDGFIHCW 240

Query: 244 KAIEGLPHLFDVKGPQNHNTEFRLWEHEGPITTLALDLTRIYSGSWDMTVRVWDRFSQKC 303
           K+++GL +LFD+ G Q   TEFRLW HEGPIT+LALD+T I+SGSWDM+VR+WDR S KC
Sbjct: 241 KSLDGLRNLFDLTGFQKEKTEFRLWGHEGPITSLALDMTSIFSGSWDMSVRIWDRSSMKC 300

Query: 304 LRILRHGDWVWGLVPHDTTIASTSGSDVYVWDTNSGELATVIHDAHVGKAYALSRSHTGD 363
           ++ LRH DWVWGL PH+TT+ASTSGSDVY+WD +S     +I DAH G  Y+L+RSHTGD
Sbjct: 301 VKTLRHSDWVWGLAPHETTLASTSGSDVYIWDVSSETPLAIIPDAHEGTTYSLARSHTGD 360

Query: 364 FLFTGGEDGAIHMFDVTNRHVDTSAQLVGSWIPHSGPVYSLAFEFPWLVSASSDGKLSLI 423
           FLFTGGEDG I MF++     +TS  L+  W+PH+ PVYSL+FEFPWLVSAS DGKL+LI
Sbjct: 361 FLFTGGEDGGIKMFEIRRYGSETSVVLISQWMPHTSPVYSLSFEFPWLVSASGDGKLALI 420

Query: 424 DVRALLRTRKRTLWKRDSAGQHVGRSIGVEPPQRMLHGFGSNLFGVDIGLDRIVCGGEEG 483
           DVR LL+T +    KR S       S  VEPPQRMLHGFGSNLF VD+G DRIVCGGEEG
Sbjct: 421 DVRKLLKTNRCAYSKRIS-------SSTVEPPQRMLHGFGSNLFSVDVGYDRIVCGGEEG 480

Query: 484 VVRIWNFSQALETERRARALRGIRLENRMRRRRLQIEMNTKGGGGGPGGGGGGGRGRSDR 543
            VRIWNF+QALE ERR RAL+G+R ENRMRRRR+Q+EMN K              GR D+
Sbjct: 481 TVRIWNFTQALEIERRTRALKGMRHENRMRRRRMQMEMNAK-------------NGRPDQ 539

Query: 544 CSVAAKKKLMNSDNVSVWHNKRGVSGKLKA 574
           CS+AA K  +N +    WH+KR  SGK KA
Sbjct: 541 CSIAAHKNPINGERNRAWHSKRRASGKAKA 539

BLAST of CmaCh02G011830 vs. TAIR 10
Match: AT3G51930.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 73.9 bits (180), Expect = 4.6e-13
Identity = 89/359 (24.79%), Postives = 135/359 (37.60%), Query Frame = 0

Query: 169 MEVLHGHTEAVRTVFLLVSAKLIFTSGYDSIVRIWDLEEGLSIASSRSLGCTVRALAADT 228
           + VL  H  +V ++ L     L  + G D IV  W   +    A       +V+AL +  
Sbjct: 54  LAVLSAHVGSVSSLALCGEFLLSASQGKDIIV--WQQPDLKIFAKFGQGDGSVKALVSVG 113

Query: 229 KLLVAGGTDGFIHCWKA-----------IEGLPHLFDVKGP--------QNHNTEFRLW- 288
             +     D  I  WK            ++ LP   D  G         Q      RLW 
Sbjct: 114 SKVFTAHQDSRIRVWKVSRRNSENAFRLVDTLPTTKDYLGKFMKQSNYVQTRRNHKRLWI 173

Query: 289 EHEGPITTLALDLTRIYSGSWDMTVRVWDRFSQKCLRILR-HGDWVWGLVPHDTTIASTS 348
           EH   I+ LA+    IYSGSWD T++VW     KCL  ++ H D + GLV  D  + S S
Sbjct: 174 EHADSISCLAVHAGIIYSGSWDKTLKVWRLSDLKCLESIKAHDDAINGLVAGDGRVYSAS 233

Query: 349 G-SDVYVWDTNSGE----LATVIHDAHVGKAYALSR----------SHTGDFLFTGGEDG 408
               V +W     +     ++     HV KA    R          S  G++++ GG DG
Sbjct: 234 ADGKVKIWGKEKRKQIESTSSSSSSLHVLKATLEGRAEVSVNSVVVSGDGNWVYGGGSDG 293

Query: 409 AIHMFDVTNRHVDTSAQLVG-SWIPHSGPVYSLAFEFPWLVSASSDGKLSLIDVRALLRT 468
            +  ++   +  D     +G     H+  V  +      + S S+D  +           
Sbjct: 294 FVIGWEKKEKEGDFEEWRLGFETRGHNMAVLCMCVVGEMVCSGSADKSIG---------- 353

Query: 469 RKRTLWKRDSAGQ--HVGRSIGVEPPQRMLHGFGSNLFGVDIGLDRIVCGGEEGVVRIW 489
               LW+R+  G     G   G E P + L    +N   V  G   +  GG +  +R+W
Sbjct: 354 ----LWRREVTGMLCKFGVIHGHEGPVKCLQASPNN---VGAGF-MLYSGGLDKSLRVW 392

BLAST of CmaCh02G011830 vs. TAIR 10
Match: AT1G21651.1 (zinc ion binding )

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-12
Identity = 69/299 (23.08%), Postives = 121/299 (40.47%), Query Frame = 0

Query: 154 VEREFRSKTFMGRYSMEVLHGHTEAVRTVFLLVSAKLIFTSGYDSIVRIWDLEEGLSIAS 213
           V+ +F  +   G+   + + GH ++V    L V    +F+S YD  + IW L++   + +
Sbjct: 502 VDIDFPGRVSEGKVRSKDMRGHQDSV--TGLAVGGGFLFSSSYDRTILIWSLKDFSHVHT 561

Query: 214 SRSLGCTVRAL---AADTKLLVAGGTDGFIHCWKA---IEGLP----------------- 273
            +     V AL        + V+G   G I  W     +E  P                 
Sbjct: 562 FKGHQDKVMALIHIEGTEPVCVSGDGGGGIFVWSTTFPLEEQPLRKWYEPKDWRYTGIHA 621

Query: 274 -------HLFDVKGP--------QNHNTEFRLWEHEGPITTLALDLTRIYSGSWDMTVRV 333
                  H++   G         Q+ +    +  H+  ++TL +    +YSGSWD TVR+
Sbjct: 622 LAYSEYGHVYTGSGDNTIKAWSLQDGSLLCTMSGHKSVVSTLVVVNGVLYSGSWDGTVRL 681

Query: 334 WDRFSQKCLRILRHGDWVWGLV--------PHDTTIASTSGSDVYVWDTNSGELATVIHD 393
           W       L +L  G+   G+V           T +A+    D+ +W  +     T++  
Sbjct: 682 WSLSDNSLLTVL--GEETPGIVRSILSLAADDQTLVAAYQNGDIQIWRDD-----TLMKS 741

Query: 394 AHVGKAYALSRSHTGDFLFTGGEDGAIHMFDVTNRHVDTSAQLVGSWIPHSGPVYSLAF 407
             +     LS +  G +LFTGG D  I++ +++   +  +   VGS IP S  + SL +
Sbjct: 742 MKIQNGAILSIAVNGKWLFTGGWDKTINVQELSGDEISVNCAHVGS-IPGSSVITSLLY 790

BLAST of CmaCh02G011830 vs. TAIR 10
Match: AT1G21650.3 (Preprotein translocase SecA family protein )

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-12
Identity = 69/299 (23.08%), Postives = 121/299 (40.47%), Query Frame = 0

Query: 154 VEREFRSKTFMGRYSMEVLHGHTEAVRTVFLLVSAKLIFTSGYDSIVRIWDLEEGLSIAS 213
           V+ +F  +   G+   + + GH ++V    L V    +F+S YD  + IW L++   + +
Sbjct: 502 VDIDFPGRVSEGKVRSKDMRGHQDSV--TGLAVGGGFLFSSSYDRTILIWSLKDFSHVHT 561

Query: 214 SRSLGCTVRAL---AADTKLLVAGGTDGFIHCWKA---IEGLP----------------- 273
            +     V AL        + V+G   G I  W     +E  P                 
Sbjct: 562 FKGHQDKVMALIHIEGTEPVCVSGDGGGGIFVWSTTFPLEEQPLRKWYEPKDWRYTGIHA 621

Query: 274 -------HLFDVKGP--------QNHNTEFRLWEHEGPITTLALDLTRIYSGSWDMTVRV 333
                  H++   G         Q+ +    +  H+  ++TL +    +YSGSWD TVR+
Sbjct: 622 LAYSEYGHVYTGSGDNTIKAWSLQDGSLLCTMSGHKSVVSTLVVVNGVLYSGSWDGTVRL 681

Query: 334 WDRFSQKCLRILRHGDWVWGLV--------PHDTTIASTSGSDVYVWDTNSGELATVIHD 393
           W       L +L  G+   G+V           T +A+    D+ +W  +     T++  
Sbjct: 682 WSLSDNSLLTVL--GEETPGIVRSILSLAADDQTLVAAYQNGDIQIWRDD-----TLMKS 741

Query: 394 AHVGKAYALSRSHTGDFLFTGGEDGAIHMFDVTNRHVDTSAQLVGSWIPHSGPVYSLAF 407
             +     LS +  G +LFTGG D  I++ +++   +  +   VGS IP S  + SL +
Sbjct: 742 MKIQNGAILSIAVNGKWLFTGGWDKTINVQELSGDEISVNCAHVGS-IPGSSVITSLLY 790

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q94AD82.0e-20262.11F-box/WD-40 repeat-containing protein At5g21040 OS=Arabidopsis thaliana OX=3702 ... [more]
D4AM372.2e-2027.69Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Arthroderma benhamiae ... [more]
C5FP682.2e-2027.87Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Arthroderma otae (stra... [more]
D4D8P32.2e-2027.69Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Trichophyton verrucosu... [more]
Q8YRI13.9e-1727.86Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7... [more]
Match NameE-valueIdentityDescription
AT5G21040.11.4e-20362.11F-box protein 2 [more]
AT5G21040.21.4e-20362.11F-box protein 2 [more]
AT3G51930.14.6e-1324.79Transducin/WD40 repeat-like superfamily protein [more]
AT1G21651.11.7e-1223.08zinc ion binding [more]
AT1G21650.31.7e-1223.08Preprotein translocase SecA family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 191..205
score: 29.02
coord: 284..298
score: 41.47
coord: 476..490
score: 23.91
IPR001810F-box domainSMARTSM00256fbox_2coord: 82..122
e-value: 6.1E-7
score: 39.1
IPR001810F-box domainPFAMPF00646F-boxcoord: 78..123
e-value: 8.7E-7
score: 28.7
IPR001810F-box domainPROSITEPS50181FBOXcoord: 76..122
score: 11.246099
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 207..244
e-value: 33.0
score: 7.4
coord: 338..378
e-value: 0.024
score: 23.8
coord: 300..335
e-value: 0.54
score: 18.7
coord: 165..204
e-value: 0.0082
score: 25.3
coord: 260..297
e-value: 9.9E-4
score: 28.4
coord: 387..424
e-value: 0.023
score: 23.9
coord: 452..489
e-value: 6.1
score: 12.1
IPR001680WD40 repeatPFAMPF00400WD40coord: 269..297
e-value: 0.022
score: 15.6
coord: 171..204
e-value: 0.068
score: 14.1
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 346..387
score: 8.603614
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 172..213
score: 13.282162
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 267..306
score: 9.706414
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 162..387
e-value: 5.9E-37
score: 129.0
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 391..507
e-value: 9.1E-7
score: 29.8
NoneNo IPR availableGENE3D1.20.1280.50coord: 73..161
e-value: 3.0E-10
score: 41.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 521..544
NoneNo IPR availablePANTHERPTHR19855:SF19F-BOX/WD-40 REPEAT PLANT PROTEINcoord: 4..570
NoneNo IPR availablePANTHERPTHR19855WD40 REPEAT PROTEIN 12, 37coord: 4..570
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 172..208
score: 10.390142
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 191..205
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 71..156
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 171..491

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G011830.1CmaCh02G011830.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0030687 preribosome, large subunit precursor
molecular_function GO:0005515 protein binding