CmaCh02G006860 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTAGGCACTGCGAATCTAGTTATGGGCTCTTCTTCAGCCGCCATGCTTACTTCAACGCAGTGTACTGCTATGAAGTCTCTTGCGAGTTTCAGAATTGGTCACCATAGCCACTGCCGAGCACTTTCACTGCCTTCGGGATTACCGTCTGCTTCTGGTTTTAGCTCCTGCTTCTTCGCTTCAAGAGGTTCTTCGCCTCAAGAGGTTCTTCGCCGTTCAACACAGCAATCGCCGCCGTTAACGATCAACTAGTGTCCTCTTATTCGGCAGGCGAGGTAATCGTTAGGTTTCCGAGCTTCTTCCGCATTTCGTTTGTCTTCAATTTCTGAAATCCGGCTTGGTGTTCATTGTTGTTCTAATTTAGGTATGAATTGATCGATACATCAGGGGTTAGGTTTTTCAAAATTGTCGATGTCCATGGAAATCTAGTGAAATTGTATGTATGTATTTTTCGAAGTCGAGATGTTTATGTTTAATCACGAAATTGATCCTAATTTGTTATGCTTCGTTGGTTTGCCCTATTTCGTTCTTGAAATTTTGGAATTGTGGAAGTGAAGCTCACTGGTTTTATGATCGTTTCAATGCAGCAAGAATCGAACAAGTACCATTTTGTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAGGGAGCTTCTCTTCGAGCGGCTTCGCTACTATGCCGCGCGTAACAAGGAGCAGGACTTTTGGTTGGTGATCGAGCCTAAATTCTTGGAAAGGTTTCCTAATATCACCAAGAGATTGCAGAGACCTGCCGTTGCTCTTGTTTCAACCAATAGTACCTGGATCACGTAAGCTACCTGTTTTCATTTTTTGCATTATTCACCCTGCTTTGCAATATTACATTATAAATAAAGGACGTTGATCCAAAACTACAACCTTAGTTAGGAATCGGGGCATAAACACTAATGTCTAACAACTCGAATTATGCTCGAGTTCCATTTGCGTCATTTGCATTGGTACATTTACTTCTTGCTGCTCATTTGCTGTGATACTTTATCATGGAAAATCGATCATCTCGAGGCCTAATAGATTACAAAAAAAGGAGATGCTATATGTGAGATCTCACATCGGTTAGGGAGGAGAACAAAGTTTCACTCCCTAGCAGACGGAAGGGGGCTCGGAAGGGAAAGTTCAAAGATCGACAATATTTGCTAGCAGTGGACATGGGTTGTTACAAATGGTATTAGAGTTAGACACTGGACAATATGCCAACGAGGAGGTTGAGCCTTAAAGAGGGTGGACACAAGGCAGTATGCCAGCAAAAACGTTGGGCCCTGAAGAGGGGTGGATTGGGGGTTCCCACATCGATTGGAGAAGGGAACGAGTGCCAGCAAGCCCCAAATGGGGAGGACACAAGGCGGCGGTGTTCCTTCAAGGACGTTGGGTCTCAAAGGGGGTGGATTGGGCGTTCCACATCGATTGGAGAAGGGAACGAGTGCCAACAAGGACACTGGGTCCCCAATGGGGGAGGATTGTGAAATCCCACATAGATTGGAGAGGAGAACAAAACATTATTTATAAAGATGTGGAAACCTCTCCCTAGCAAACGCGTTTTAAAAACAATTGGCTAGCGGTGAGCTTGGGTTGTTACACTTTATCTCGAGATAAATCATCGAGGTAGATAACAAATTTTGAAGGACTACTGGAGGCTTGAATATAATCAACAGCTACAATGCATCTTAATTCTATAGAGCTTAATTCTATAGAGCTTTGTTATTTGCATATGCTGACAGAACAACATTTACTCCCATCTGCACTTGGTTAGTTTTTGGATTTCTAGTTTCTATAGATGCTGTAATGCAAACTTACCTTGTTGAGAAGTTGTTTAGCAACAGCAACTGAAACTCATTTACGTTTAATAACCTCATTTGTATATCGTGGGTGAAGTTAAATGTTTACAATTACTACAAAAGCATCTCCGGCAACAATGTCTTGGCTCGACAACCCATTTTAGTCCTTTCTTTTGTTGATATGGGCAGGTTCATGAAGCTGAGACTGGACCGAGTTTTAGCCGAAAGCTACGAAGCCGATAGCTTAAACAAGCATTGGCTTCTAACCCGACCAACATCGGAGTTTGAGAAGCCTGAAAAATGGGCGGCTCCCTACCCCAAGTATGAATATGGATGGTGGGAGATTTCCTTGCCGCCAGTGACAAAAACAGAAGCAGAAGCAAAAGTGTAAGCTGTGTGATTTTCTTTAACATCTTTAATCAATTAGCATTTGGATGGTGCGAGGATTTGATAAACCATTTGTAGTTGGAATGCAGCTTTTGATTATTCTAATATGGTAAATGAGTTTACTTTTGTGGCTGTTCTTCATTTTAGAGTCGAATGTACAGGATTCATTTATTTTTTTTTCATTTTTTCTTGTTATAATTATTAACTTATATAAAATGGGCTGCTGCTGATTTCATT ATGTTAGGCACTGCGAATCTAGTTATGGGCTCTTCTTCAGCCGCCATGCTTACTTCAACGCAGTGTACTGCTATGAAGTCTCTTGCGAGTTTCAGAATTGGTCACCATAGCCACTGCCGAGCACTTTCACTGCCTTCGGGATTACCGTCTGCTTCTGGTTTTAGCTCCTGCTTCTTCGCTTCAAGAGGTTCTTCGCCTCAAGAGCAAGAATCGAACAAGTACCATTTTGTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAGGGAGCTTCTCTTCGAGCGGCTTCGCTACTATGCCGCGCGTAACAAGGAGCAGGACTTTTGGTTGGTGATCGAGCCTAAATTCTTGGAAAGGTTTCCTAATATCACCAAGAGATTGCAGAGACCTGCCGTTGCTCTTGTTTCAACCAATAGTACCTGGATCACGTTCATGAAGCTGAGACTGGACCGAGTTTTAGCCGAAAGCTACGAAGCCGATAGCTTAAACAAGCATTGGCTTCTAACCCGACCAACATCGGAGTTTGAGAAGCCTGAAAAATGGGCGGCTCCCTACCCCAAGTATGAATATGGATGGTGGGAGATTTCCTTGCCGCCAGTGACAAAAACAGAAGCAGAAGCAAAAGTGTAAGCTGTGTGATTTTCTTTAACATCTTTAATCAATTAGCATTTGGATGGTGCGAGGATTTGATAAACCATTTGTAGTTGGAATGCAGCTTTTGATTATTCTAATATGGTAAATGAGTTTACTTTTGTGGCTGTTCTTCATTTTAGAGTCGAATGTACAGGATTCATTTATTTTTTTTTCATTTTTTCTTGTTATAATTATTAACTTATATAAAATGGGCTGCTGCTGATTTCATT ATGTTAGGCACTGCGAATCTAGTTATGGGCTCTTCTTCAGCCGCCATGCTTACTTCAACGCAGTGTACTGCTATGAAGTCTCTTGCGAGTTTCAGAATTGGTCACCATAGCCACTGCCGAGCACTTTCACTGCCTTCGGGATTACCGTCTGCTTCTGGTTTTAGCTCCTGCTTCTTCGCTTCAAGAGGTTCTTCGCCTCAAGAGCAAGAATCGAACAAGTACCATTTTGTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAGGGAGCTTCTCTTCGAGCGGCTTCGCTACTATGCCGCGCGTAACAAGGAGCAGGACTTTTGGTTGGTGATCGAGCCTAAATTCTTGGAAAGGTTTCCTAATATCACCAAGAGATTGCAGAGACCTGCCGTTGCTCTTGTTTCAACCAATAGTACCTGGATCACGTTCATGAAGCTGAGACTGGACCGAGTTTTAGCCGAAAGCTACGAAGCCGATAGCTTAAACAAGCATTGGCTTCTAACCCGACCAACATCGGAGTTTGAGAAGCCTGAAAAATGGGCGGCTCCCTACCCCAAGTATGAATATGGATGGTGGGAGATTTCCTTGCCGCCAGTGACAAAAACAGAAGCAGAAGCAAAAGTGTAA MLGTANLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRALSLPSGLPSASGFSSCFFASRGSSPQEQESNKYHFVVANAKFMLDEEEHFRELLFERLRYYAARNKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEADSLNKHWLLTRPTSEFEKPEKWAAPYPKYEYGWWEISLPPVTKTEAEAKV Homology
BLAST of CmaCh02G006860 vs. ExPASy Swiss-Prot
Match: P72777 (Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1780 PE=1 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 2.4e-12 Identity = 43/93 (46.24%), Postives = 60/93 (64.52%), Query Frame = 0
BLAST of CmaCh02G006860 vs. ExPASy Swiss-Prot
Match: P51204 (Uncharacterized protein ycf54 OS=Porphyra purpurea OX=2787 GN=ycf54 PE=3 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.3e-10 Identity = 40/97 (41.24%), Postives = 59/97 (60.82%), Query Frame = 0
BLAST of CmaCh02G006860 vs. ExPASy Swiss-Prot
Match: Q1XDT3 (Uncharacterized protein ycf54 OS=Pyropia yezoensis OX=2788 GN=ycf54 PE=3 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 1.6e-08 Identity = 33/90 (36.67%), Postives = 55/90 (61.11%), Query Frame = 0
BLAST of CmaCh02G006860 vs. TAIR 10
Match: AT5G58250.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2488 (InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 207.2 bits (526), Expect = 1.3e-53 Identity = 107/173 (61.85%), Postives = 127/173 (73.41%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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