CmaCh02G006860 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G006860
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ycf54-like protein
Location	Cma_Chr02: 4193034 .. 4195479 (-)
RNA-Seq Expression	CmaCh02G006860
Synteny	CmaCh02G006860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGGCACTGCGAATCTAGTTATGGGCTCTTCTTCAGCCGCCATGCTTACTTCAACGCAGTGTACTGCTATGAAGTCTCTTGCGAGTTTCAGAATTGGTCACCATAGCCACTGCCGAGCACTTTCACTGCCTTCGGGATTACCGTCTGCTTCTGGTTTTAGCTCCTGCTTCTTCGCTTCAAGAGGTTCTTCGCCTCAAGAGGTTCTTCGCCGTTCAACACAGCAATCGCCGCCGTTAACGATCAACTAGTGTCCTCTTATTCGGCAGGCGAGGTAATCGTTAGGTTTCCGAGCTTCTTCCGCATTTCGTTTGTCTTCAATTTCTGAAATCCGGCTTGGTGTTCATTGTTGTTCTAATTTAGGTATGAATTGATCGATACATCAGGGGTTAGGTTTTTCAAAATTGTCGATGTCCATGGAAATCTAGTGAAATTGTATGTATGTATTTTTCGAAGTCGAGATGTTTATGTTTAATCACGAAATTGATCCTAATTTGTTATGCTTCGTTGGTTTGCCCTATTTCGTTCTTGAAATTTTGGAATTGTGGAAGTGAAGCTCACTGGTTTTATGATCGTTTCAATGCAGCAAGAATCGAACAAGTACCATTTTGTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAGGGAGCTTCTCTTCGAGCGGCTTCGCTACTATGCCGCGCGTAACAAGGAGCAGGACTTTTGGTTGGTGATCGAGCCTAAATTCTTGGAAAGGTTTCCTAATATCACCAAGAGATTGCAGAGACCTGCCGTTGCTCTTGTTTCAACCAATAGTACCTGGATCACGTAAGCTACCTGTTTTCATTTTTTGCATTATTCACCCTGCTTTGCAATATTACATTATAAATAAAGGACGTTGATCCAAAACTACAACCTTAGTTAGGAATCGGGGCATAAACACTAATGTCTAACAACTCGAATTATGCTCGAGTTCCATTTGCGTCATTTGCATTGGTACATTTACTTCTTGCTGCTCATTTGCTGTGATACTTTATCATGGAAAATCGATCATCTCGAGGCCTAATAGATTACAAAAAAAGGAGATGCTATATGTGAGATCTCACATCGGTTAGGGAGGAGAACAAAGTTTCACTCCCTAGCAGACGGAAGGGGGCTCGGAAGGGAAAGTTCAAAGATCGACAATATTTGCTAGCAGTGGACATGGGTTGTTACAAATGGTATTAGAGTTAGACACTGGACAATATGCCAACGAGGAGGTTGAGCCTTAAAGAGGGTGGACACAAGGCAGTATGCCAGCAAAAACGTTGGGCCCTGAAGAGGGGTGGATTGGGGGTTCCCACATCGATTGGAGAAGGGAACGAGTGCCAGCAAGCCCCAAATGGGGAGGACACAAGGCGGCGGTGTTCCTTCAAGGACGTTGGGTCTCAAAGGGGGTGGATTGGGCGTTCCACATCGATTGGAGAAGGGAACGAGTGCCAACAAGGACACTGGGTCCCCAATGGGGGAGGATTGTGAAATCCCACATAGATTGGAGAGGAGAACAAAACATTATTTATAAAGATGTGGAAACCTCTCCCTAGCAAACGCGTTTTAAAAACAATTGGCTAGCGGTGAGCTTGGGTTGTTACACTTTATCTCGAGATAAATCATCGAGGTAGATAACAAATTTTGAAGGACTACTGGAGGCTTGAATATAATCAACAGCTACAATGCATCTTAATTCTATAGAGCTTAATTCTATAGAGCTTTGTTATTTGCATATGCTGACAGAACAACATTTACTCCCATCTGCACTTGGTTAGTTTTTGGATTTCTAGTTTCTATAGATGCTGTAATGCAAACTTACCTTGTTGAGAAGTTGTTTAGCAACAGCAACTGAAACTCATTTACGTTTAATAACCTCATTTGTATATCGTGGGTGAAGTTAAATGTTTACAATTACTACAAAAGCATCTCCGGCAACAATGTCTTGGCTCGACAACCCATTTTAGTCCTTTCTTTTGTTGATATGGGCAGGTTCATGAAGCTGAGACTGGACCGAGTTTTAGCCGAAAGCTACGAAGCCGATAGCTTAAACAAGCATTGGCTTCTAACCCGACCAACATCGGAGTTTGAGAAGCCTGAAAAATGGGCGGCTCCCTACCCCAAGTATGAATATGGATGGTGGGAGATTTCCTTGCCGCCAGTGACAAAAACAGAAGCAGAAGCAAAAGTGTAAGCTGTGTGATTTTCTTTAACATCTTTAATCAATTAGCATTTGGATGGTGCGAGGATTTGATAAACCATTTGTAGTTGGAATGCAGCTTTTGATTATTCTAATATGGTAAATGAGTTTACTTTTGTGGCTGTTCTTCATTTTAGAGTCGAATGTACAGGATTCATTTATTTTTTTTTCATTTTTTCTTGTTATAATTATTAACTTATATAAAATGGGCTGCTGCTGATTTCATT

mRNA sequence

ATGTTAGGCACTGCGAATCTAGTTATGGGCTCTTCTTCAGCCGCCATGCTTACTTCAACGCAGTGTACTGCTATGAAGTCTCTTGCGAGTTTCAGAATTGGTCACCATAGCCACTGCCGAGCACTTTCACTGCCTTCGGGATTACCGTCTGCTTCTGGTTTTAGCTCCTGCTTCTTCGCTTCAAGAGGTTCTTCGCCTCAAGAGCAAGAATCGAACAAGTACCATTTTGTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAGGGAGCTTCTCTTCGAGCGGCTTCGCTACTATGCCGCGCGTAACAAGGAGCAGGACTTTTGGTTGGTGATCGAGCCTAAATTCTTGGAAAGGTTTCCTAATATCACCAAGAGATTGCAGAGACCTGCCGTTGCTCTTGTTTCAACCAATAGTACCTGGATCACGTTCATGAAGCTGAGACTGGACCGAGTTTTAGCCGAAAGCTACGAAGCCGATAGCTTAAACAAGCATTGGCTTCTAACCCGACCAACATCGGAGTTTGAGAAGCCTGAAAAATGGGCGGCTCCCTACCCCAAGTATGAATATGGATGGTGGGAGATTTCCTTGCCGCCAGTGACAAAAACAGAAGCAGAAGCAAAAGTGTAAGCTGTGTGATTTTCTTTAACATCTTTAATCAATTAGCATTTGGATGGTGCGAGGATTTGATAAACCATTTGTAGTTGGAATGCAGCTTTTGATTATTCTAATATGGTAAATGAGTTTACTTTTGTGGCTGTTCTTCATTTTAGAGTCGAATGTACAGGATTCATTTATTTTTTTTTCATTTTTTCTTGTTATAATTATTAACTTATATAAAATGGGCTGCTGCTGATTTCATT

Coding sequence (CDS)

ATGTTAGGCACTGCGAATCTAGTTATGGGCTCTTCTTCAGCCGCCATGCTTACTTCAACGCAGTGTACTGCTATGAAGTCTCTTGCGAGTTTCAGAATTGGTCACCATAGCCACTGCCGAGCACTTTCACTGCCTTCGGGATTACCGTCTGCTTCTGGTTTTAGCTCCTGCTTCTTCGCTTCAAGAGGTTCTTCGCCTCAAGAGCAAGAATCGAACAAGTACCATTTTGTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAGGGAGCTTCTCTTCGAGCGGCTTCGCTACTATGCCGCGCGTAACAAGGAGCAGGACTTTTGGTTGGTGATCGAGCCTAAATTCTTGGAAAGGTTTCCTAATATCACCAAGAGATTGCAGAGACCTGCCGTTGCTCTTGTTTCAACCAATAGTACCTGGATCACGTTCATGAAGCTGAGACTGGACCGAGTTTTAGCCGAAAGCTACGAAGCCGATAGCTTAAACAAGCATTGGCTTCTAACCCGACCAACATCGGAGTTTGAGAAGCCTGAAAAATGGGCGGCTCCCTACCCCAAGTATGAATATGGATGGTGGGAGATTTCCTTGCCGCCAGTGACAAAAACAGAAGCAGAAGCAAAAGTGTAA

Protein sequence

MLGTANLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRALSLPSGLPSASGFSSCFFASRGSSPQEQESNKYHFVVANAKFMLDEEEHFRELLFERLRYYAARNKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEADSLNKHWLLTRPTSEFEKPEKWAAPYPKYEYGWWEISLPPVTKTEAEAKV

Homology

[Close]

BLAST of CmaCh02G006860 vs. ExPASy Swiss-Prot
Match: P72777 (Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1780 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-12
Identity = 43/93 (46.24%), Postives = 60/93 (64.52%), Query Frame = 0


Query: 74  YHFVVANAKFMLDEEEHFRELLFERLRYYAARNKEQDFWLVIEPKFLERFPNITKRLQRP 133
           Y++ +A+ KF+L EEE F E+L ER R Y  +NKE DFW VI+P FL        + + P
Sbjct: 31  YYYALASQKFLL-EEEPFEEVLKERRRDYGEKNKEIDFWQVIQPAFLNAPELAEAKAKAP 90

Query: 134 A--VALVSTNSTWITFMKLRLDRVLAESYEADS 165
              VA+VSTN ++I ++KLRL+ VL   +EA S
Sbjct: 91  EKNVAIVSTNKSFIVWVKLRLEYVLTGEFEAPS 122

[Close]

BLAST of CmaCh02G006860 vs. ExPASy Swiss-Prot
Match: P51204 (Uncharacterized protein ycf54 OS=Porphyra purpurea OX=2787 GN=ycf54 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-10
Identity = 40/97 (41.24%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 74  YHFVVANAKFMLDEEEHFRELLFERLRYYAARNKEQDFWLVIEPKFLE-----RFPNITK 133
           Y+F +A+  F+L EE    E+  ER+ YY + NKE DFWL+  PKFL      +F N+  
Sbjct: 4   YYFALASQNFLLSEEP-LEEVFRERINYYQSNNKEIDFWLIPNPKFLNKPAMIKFKNL-- 63

Query: 134 RLQRPAVALVSTNSTWITFMKLRLDRVLAESYEADSL 166
            +   A+A++STNS +I ++KLR+  V    +E DSL
Sbjct: 64  -VPNEAIAIISTNSIFINWLKLRIGYVCIGQFE-DSL 95

[Close]

BLAST of CmaCh02G006860 vs. ExPASy Swiss-Prot
Match: Q1XDT3 (Uncharacterized protein ycf54 OS=Pyropia yezoensis OX=2788 GN=ycf54 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-08
Identity = 33/90 (36.67%), Postives = 55/90 (61.11%), Query Frame = 0


Query: 74  YHFVVANAKFMLDEEEHFRELLFERLRYYAARNKEQDFWLVIEPKFLERFPNITKR--LQ 133
           Y+F +A+  F+L  +E   E+  ER+ YY + NK  DFWL+  P FLE+   I+ +  + 
Sbjct: 4   YYFALASQNFLL-VQEPLEEVFRERVNYYQSNNKAIDFWLIPNPSFLEKPEMISFKNLVP 63

Query: 134 RPAVALVSTNSTWITFMKLRLDRVLAESYE 162
           + AVA++STN  +I ++KLR+  +    +E
Sbjct: 64  KDAVAIISTNPIFINWLKLRIGYICIGQFE 92

[Close]

BLAST of CmaCh02G006860 vs. TAIR 10
Match: AT5G58250.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2488 (InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 207.2 bits (526), Expect = 1.3e-53
Identity = 107/173 (61.85%), Postives = 127/173 (73.41%), Query Frame = 0


Query: 36  HSHCRALSLPSGLPSASGFSSCFFASRGSSPQEQESNKYHFVVANAKFMLDEEEHFRELL 95
           H    +LSLPS   S+S  ++     + SS  + ES KYHF+VANAKFMLDEEEHF+E L
Sbjct: 38  HLSSPSLSLPSSHFSSSFKTAATSIEQQSSVNKGESTKYHFLVANAKFMLDEEEHFQEQL 97

Query: 96  FERLRYYAARNKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRV 155
           FERLRY+  R   QDFWLVIEPKFL+ FP IT+RL+RPAVALVSTN TWITFMKLRLDRV
Sbjct: 98  FERLRYFGERELVQDFWLVIEPKFLDNFPKITQRLRRPAVALVSTNGTWITFMKLRLDRV 157

Query: 156 LAESYEADSLNKHWLLTRPTSEFEKPEKWAAPYPKYEYGWWEISLPPVTKTEA 209
           L +S+EA SL++       T EF+KP+ W APYPKYE GWW+  LP VT+  A
Sbjct: 158 LYDSFEATSLDEALASNPTTLEFDKPKNWVAPYPKYEPGWWDTFLPKVTQESA 210

The following BLAST results are available for this feature:

BLAST of CmaCh02G006860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P72777	2.4e-12	46.24	Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]
P51204	1.3e-10	41.24	Uncharacterized protein ycf54 OS=Porphyra purpurea OX=2787 GN=ycf54 PE=3 SV=1	[more]
Q1XDT3	1.6e-08	36.67	Uncharacterized protein ycf54 OS=Pyropia yezoensis OX=2788 GN=ycf54 PE=3 SV=1	[more]

BLAST of CmaCh02G006860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58250.1	1.3e-53	61.85	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019616	Ycf54 protein	PFAM	PF10674	Ycf54	coord: 73..162 e-value: 3.2E-34 score: 117.1
IPR019616	Ycf54 protein	PANTHER	PTHR35319	FAMILY NOT NAMED	coord: 61..206
IPR038409	Ycf54-like superfamily	GENE3D	3.30.70.1860	Uncharacterised protein family Ycf54	coord: 69..180 e-value: 2.2E-34 score: 119.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G006860.1	CmaCh02G006860.1	mRNA