CmaCh02G005590 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G005590
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionCAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
LocationCma_Chr02: 3164062 .. 3164562 (+)
RNA-Seq ExpressionCmaCh02G005590
SyntenyCmaCh02G005590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCATCAATCCAACTTGGGTACTGCCAGTTCTAGCCTTGGGACTATTCCAAATAGTCGCCGGGCAGAGTTCAGCGGCAGCCAGAGATTTTTTACATTTTCACAACAAGGCAAGGGCGGAGGTGGGGGTGGAGCCACTGCAGTGGAGCCAAAATCTAGCCAATCTCACAGCCCGCCTCGTCCGATTCCAACGCAACCAAAAGATCTGCGACACCGCTGACGTGACCCGTTTCCGGTACGGCAAGAATCAGGATTGGTCGAATCGACCGGCACAGTCGCCGGGCCTGGCAGTGGAGCGGTGGGTTGAAAAGAAGGCGTTTTACAATCACACGAGCAACACGTGCACGAAGGATCGCCTATGTGGGGCTTATACTCAGGTGGTCTGGCGGAAGACGAAGGAAGTGGGGTGTGCTCAGGCGACGTGTCGGCAGGAACAGATTACTTTGACCATTTGTTTCTATAATCCTCCAGGAAACGGAATCGGTGAGAGACCGTATTAG

mRNA sequence

ATGGGCATCAATCCAACTTGGGTACTGCCAGTTCTAGCCTTGGGACTATTCCAAATAGTCGCCGGGCAGAGTTCAGCGGCAGCCAGAGATTTTTTACATTTTCACAACAAGGCAAGGGCGGAGGTGGGGGTGGAGCCACTGCAGTGGAGCCAAAATCTAGCCAATCTCACAGCCCGCCTCGTCCGATTCCAACGCAACCAAAAGATCTGCGACACCGCTGACGTGACCCGTTTCCGGTACGGCAAGAATCAGGATTGGTCGAATCGACCGGCACAGTCGCCGGGCCTGGCAGTGGAGCGGTGGGTTGAAAAGAAGGCGTTTTACAATCACACGAGCAACACGTGCACGAAGGATCGCCTATGTGGGGCTTATACTCAGGTGGTCTGGCGGAAGACGAAGGAAGTGGGGTGTGCTCAGGCGACGTGTCGGCAGGAACAGATTACTTTGACCATTTGTTTCTATAATCCTCCAGGAAACGGAATCGGTGAGAGACCGTATTAG

Coding sequence (CDS)

ATGGGCATCAATCCAACTTGGGTACTGCCAGTTCTAGCCTTGGGACTATTCCAAATAGTCGCCGGGCAGAGTTCAGCGGCAGCCAGAGATTTTTTACATTTTCACAACAAGGCAAGGGCGGAGGTGGGGGTGGAGCCACTGCAGTGGAGCCAAAATCTAGCCAATCTCACAGCCCGCCTCGTCCGATTCCAACGCAACCAAAAGATCTGCGACACCGCTGACGTGACCCGTTTCCGGTACGGCAAGAATCAGGATTGGTCGAATCGACCGGCACAGTCGCCGGGCCTGGCAGTGGAGCGGTGGGTTGAAAAGAAGGCGTTTTACAATCACACGAGCAACACGTGCACGAAGGATCGCCTATGTGGGGCTTATACTCAGGTGGTCTGGCGGAAGACGAAGGAAGTGGGGTGTGCTCAGGCGACGTGTCGGCAGGAACAGATTACTTTGACCATTTGTTTCTATAATCCTCCAGGAAACGGAATCGGTGAGAGACCGTATTAG

Protein sequence

MGINPTWVLPVLALGLFQIVAGQSSAAARDFLHFHNKARAEVGVEPLQWSQNLANLTARLVRFQRNQKICDTADVTRFRYGKNQDWSNRPAQSPGLAVERWVEKKAFYNHTSNTCTKDRLCGAYTQVVWRKTKEVGCAQATCRQEQITLTICFYNPPGNGIGERPY
Homology
BLAST of CmaCh02G005590 vs. ExPASy Swiss-Prot
Match: Q41495 (STS14 protein OS=Solanum tuberosum OX=4113 GN=STS14 PE=2 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 5.9e-43
Identity = 77/142 (54.23%), Postives = 105/142 (73.94%), Query Frame = 0

Query: 25  SAAARDFLHFHNKARAEVGVEPLQWSQNLANLTARLVRFQRNQKICDTADVTRFRYGKNQ 84
           S AA++FL  HNKAR+EVGV PL WS  LA  T+ LVR+QR+++ C  A+++  +YG NQ
Sbjct: 73  SRAAQEFLDAHNKARSEVGVGPLTWSPMLAKETSLLVRYQRDKQNCSFANLSNGKYGGNQ 132

Query: 85  DWSNRPAQSPGLAVERWVEKKAFYNHTSNTCTKDRLCGAYTQVVWRKTKEVGCAQATCRQ 144
            W++    +P +AV+ WV +K FYN+ +N+CT D  CG YTQ+VW+K+ E+GCAQ TC +
Sbjct: 133 LWASGTVVTPRMAVDSWVAEKKFYNYENNSCTGDDKCGVYTQIVWKKSIELGCAQRTCYE 192

Query: 145 EQITLTICFYNPPGNGIGERPY 167
              TLT+CFYNPPGN IGE+PY
Sbjct: 193 GPATLTVCFYNPPGNVIGEKPY 214

BLAST of CmaCh02G005590 vs. ExPASy Swiss-Prot
Match: P07053 (Pathogenesis-related protein 1B OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.0e-26
Identity = 65/159 (40.88%), Postives = 91/159 (57.23%), Query Frame = 0

Query: 11  VLALGLFQIVAGQSSA--AARDFLHFHNKARAEVGVEPLQWSQNLANLTARLVRFQRNQK 70
           V  L LF I++  S A  + +D+L  HN ARA+VGVEPL W   +A      V    +Q 
Sbjct: 15  VSTLLLFLIISHSSHAQNSQQDYLDAHNTARADVGVEPLTWDNGVAAYAQNYV----SQL 74

Query: 71  ICDTADV-TRFRYGKNQDWSNRPAQSPGLAVERWVEKKAFYNHTSNTCTKDRLCGAYTQV 130
             D   V +  +YG+N    +    +   AVE WV++K +Y+H SNTC + ++CG YTQV
Sbjct: 75  AADCNLVHSHGQYGENLAQGSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQV 134

Query: 131 VWRKTKEVGCAQATCRQEQITLTICFYNPPGNGIGERPY 167
           VWR +  VGCA+  C      ++ C Y+PPGN IG+ PY
Sbjct: 135 VWRNSVRVGCARVKCNNGGYVVS-CNYDPPGNVIGQSPY 168

BLAST of CmaCh02G005590 vs. ExPASy Swiss-Prot
Match: P09042 (Pathogenesis-related protein 1C OS=Nicotiana tabacum OX=4097 PE=2 SV=3)

HSP 1 Score: 117.1 bits (292), Expect = 1.9e-25
Identity = 64/159 (40.25%), Postives = 88/159 (55.35%), Query Frame = 0

Query: 11  VLALGLFQIVAGQSSA--AARDFLHFHNKARAEVGVEPLQWSQNLANLTARLVRFQRNQK 70
           V  L LF I++    A  + +D+L  HN ARA+VGVEPL W   +A           +Q 
Sbjct: 15  VSTLLLFLIISHSCHAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYA----SQL 74

Query: 71  ICDTADV-TRFRYGKNQDWSNRPAQSPGLAVERWVEKKAFYNHTSNTCTKDRLCGAYTQV 130
             D   V +  +YG+N  W +    +   AVE WV +K +Y H SNTC + ++CG YTQV
Sbjct: 75  AADCNLVHSHGQYGENLAWGSGDFLTAAKAVEMWVNEKQYYAHDSNTCAQGQVCGHYTQV 134

Query: 131 VWRKTKEVGCAQATCRQEQITLTICFYNPPGNGIGERPY 167
           VWR +  VGCA+  C      ++ C Y+PPGN IG+ PY
Sbjct: 135 VWRNSVRVGCARVQCNNGGYIVS-CNYDPPGNVIGKSPY 168

BLAST of CmaCh02G005590 vs. ExPASy Swiss-Prot
Match: Q40374 (Pathogenesis-related protein PR-1 OS=Medicago truncatula OX=3880 GN=PR-1 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.3e-25
Identity = 58/145 (40.00%), Postives = 79/145 (54.48%), Query Frame = 0

Query: 23  QSSAAARDFLHFHNKARAEVGVEPLQWSQNLANLTARLVRFQRNQKICDTA-DVTRFRYG 82
           +S +    FL   N ARA VG+ PL W   L +      ++  NQ+  D A + +   YG
Sbjct: 33  KSRSFKNQFLIPQNIARAAVGLRPLVWDDKLTH----YAQWYANQRRNDCALEHSNGPYG 92

Query: 83  KNQDWSNRPAQSPGLAVERWVEKKAFYNHTSNTCTKDRLCGAYTQVVWRKTKEVGCAQAT 142
           +N  W +    +P  AV  WV++K FYN+  N+C    +CG YTQVVW  T +VGCA   
Sbjct: 93  ENIFWGSGVGWNPAQAVSAWVDEKQFYNYWHNSCVDGEMCGHYTQVVWGSTTKVGCASVV 152

Query: 143 CRQEQITLTICFYNPPGNGIGERPY 167
           C  ++ T   C Y+PPGN  GERPY
Sbjct: 153 CSDDKGTFMTCNYDPPGNYYGERPY 173

BLAST of CmaCh02G005590 vs. ExPASy Swiss-Prot
Match: P08299 (Pathogenesis-related protein 1A OS=Nicotiana tabacum OX=4097 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.6e-24
Identity = 64/165 (38.79%), Postives = 93/165 (56.36%), Query Frame = 0

Query: 5   PTWVLPVLALGLFQIVAGQSSA--AARDFLHFHNKARAEVGVEPLQWSQNLANLTARLVR 64
           P+++L V  L LF +++    A  + +D+L  HN ARA+VGVEPL W   +A        
Sbjct: 10  PSFLL-VSTLLLFLVISHSCRAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYA- 69

Query: 65  FQRNQKICDTADV-TRFRYGKNQDWSNRPAQSPGLAVERWVEKKAFYNHTSNTCTKDRLC 124
              +Q   D   V +  +YG+N    +    +   AVE WV++K +Y+H SNTC + ++C
Sbjct: 70  ---SQLAADCNLVHSHGQYGENLAEGSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVC 129

Query: 125 GAYTQVVWRKTKEVGCAQATCRQEQITLTICFYNPPGNGIGERPY 167
           G YTQVVWR +  VGCA+  C      ++ C Y+PPGN  GE PY
Sbjct: 130 GHYTQVVWRNSVRVGCARVQCNNGGYVVS-CNYDPPGNYRGESPY 168

BLAST of CmaCh02G005590 vs. TAIR 10
Match: AT5G66590.1 (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein )

HSP 1 Score: 178.3 bits (451), Expect = 5.0e-45
Identity = 83/143 (58.04%), Postives = 101/143 (70.63%), Query Frame = 0

Query: 25  SAAARDFLHFHNKARAEVGVEPLQWSQNLANLTARLVRFQRNQKICDTADVTRFRYGKNQ 84
           SAAA+ F   HNKARA VGV PL WSQ L    +RL R+QRNQK C+ A +   +YG NQ
Sbjct: 43  SAAAKAFTDAHNKARAMVGVPPLVWSQTLEAAASRLARYQRNQKKCEFASLNPGKYGANQ 102

Query: 85  DWS-NRPAQSPGLAVERWVEKKAFYNHTSNTCTKDRLCGAYTQVVWRKTKEVGCAQATCR 144
            W+    A +P LAVE WV++K FYN+ S+TC  +  CG Y QVVWR +KE+GCAQATC 
Sbjct: 103 LWAKGLVAVTPSLAVETWVKEKPFYNYKSDTCAANHTCGVYKQVVWRNSKELGCAQATCT 162

Query: 145 QEQITLTICFYNPPGNGIGERPY 167
           +E   LTICFYNPPGN IG++PY
Sbjct: 163 KESTVLTICFYNPPGNVIGQKPY 185

BLAST of CmaCh02G005590 vs. TAIR 10
Match: AT4G33720.1 (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein )

HSP 1 Score: 118.2 bits (295), Expect = 6.1e-27
Identity = 64/152 (42.11%), Postives = 92/152 (60.53%), Query Frame = 0

Query: 16  LFQIVAGQSSAAARDFLHFHNKARAEVGVEPLQWSQNLANLTARLVRFQRNQKICDTA-D 75
           L  IV  ++  + +DFL  HN+ARAEVGV PL+W + +    A   R   NQ+  D A  
Sbjct: 18  LVLIVHLKAQDSPQDFLAVHNRARAEVGVGPLRWDEKV----AAYARNYANQRKGDCAMK 77

Query: 76  VTRFRYGKNQDWSNRPAQSPGLAVERWVEKKAFYNHTSNTCTKDRLCGAYTQVVWRKTKE 135
            +   YG+N  WS+  + +   AV+ WV+++  Y++ SNTC  D+ CG YTQVVWR ++ 
Sbjct: 78  HSSGSYGENIAWSS-GSMTGVAAVDMWVDEQFDYDYDSNTCAWDKQCGHYTQVVWRNSER 137

Query: 136 VGCAQATCRQEQITLTICFYNPPGNGIGERPY 167
           +GCA+  C   Q  +T C Y+PPGN +GE PY
Sbjct: 138 LGCAKVRCNNGQTFIT-CNYDPPGNWVGEWPY 163

BLAST of CmaCh02G005590 vs. TAIR 10
Match: AT5G57625.1 (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein )

HSP 1 Score: 112.8 bits (281), Expect = 2.6e-25
Identity = 54/143 (37.76%), Postives = 77/143 (53.85%), Query Frame = 0

Query: 24  SSAAARDFLHFHNKARAEVGVEPLQWSQNLANLTARLVRFQRNQKICDTADVTRFRYGKN 83
           + + AR FL  HN  R+ +G+ PL W   LA+        +R    C     T   YG+N
Sbjct: 68  AGSIARLFLDPHNALRSGLGLPPLIWDGKLASYATWWANQRRYD--CSLTHSTG-PYGEN 127

Query: 84  QDWSNRPAQSPGLAVERWVEKKAFYNHTSNTCTKDRLCGAYTQVVWRKTKEVGCAQATCR 143
             W +  + +PG AV+ W+ +   YNH +N+C    +CG YTQ+VWR TK +GCA+  C 
Sbjct: 128 LFWGSGSSWAPGFAVQSWIVEGRSYNHNTNSCDGSGMCGHYTQMVWRDTKRLGCARVVCE 187

Query: 144 QEQITLTICFYNPPGNGIGERPY 167
                   C Y+PPGN +GE+PY
Sbjct: 188 NGAGVFITCNYDPPGNYVGEKPY 207

BLAST of CmaCh02G005590 vs. TAIR 10
Match: AT1G01310.1 (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein )

HSP 1 Score: 108.6 bits (270), Expect = 4.8e-24
Identity = 57/141 (40.43%), Postives = 74/141 (52.48%), Query Frame = 0

Query: 27  AARDFLHFHNKARAEVGVEPLQWSQNLANLTARLVRFQRNQKICDTADV-TRFRYGKNQD 86
           A+R+FL  HN  RA VG  P QW   L    A   R   NQ++ D   V +   YG+N  
Sbjct: 84  ASREFLIAHNLVRARVGEPPFQWDGRL----AAYARTWANQRVGDCRLVHSNGPYGENIF 143

Query: 87  WSNRPAQSPGLAVERWVEKKAFYNHTSNTCTKDRLCGAYTQVVWRKTKEVGCAQATCRQE 146
           W+ +   SP   V  W ++  FY+   NTC    +CG YTQ+VWR + +VGCA   C   
Sbjct: 144 WAGKNNWSPRDIVNVWADEDKFYDVKGNTCEPQHMCGHYTQIVWRDSTKVGCASVDCSNG 203

Query: 147 QITLTICFYNPPGNGIGERPY 167
            +   IC YNPPGN  GE P+
Sbjct: 204 GV-YAICVYNPPGNYEGENPF 219

BLAST of CmaCh02G005590 vs. TAIR 10
Match: AT4G25790.1 (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein )

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-23
Identity = 51/138 (36.96%), Postives = 71/138 (51.45%), Query Frame = 0

Query: 29  RDFLHFHNKARAEVGVEPLQWSQNLANLTARLVRFQRNQKICDTADVTRFRYGKNQDWSN 88
           + FL  HN  R  +G+ PL W   +A+        +R    C     T   YG+N  W +
Sbjct: 76  QQFLDPHNTVRGGLGLPPLVWDVKIASYATWWANQRRYD--CSLTHSTG-PYGENLFWGS 135

Query: 89  RPAQSPGLAVERWVEKKAFYNHTSNTCTKDRLCGAYTQVVWRKTKEVGCAQATCRQEQIT 148
               +   AVE W  +   YNH +NTC  D +CG YTQ+VWR+T+ +GCA+  C      
Sbjct: 136 GSDFTSTFAVESWTVEAKSYNHMTNTCEGDGMCGHYTQIVWRETRRLGCARVVCENGAGV 195

Query: 149 LTICFYNPPGNGIGERPY 167
              C Y+PPGN +GE+PY
Sbjct: 196 FITCNYDPPGNYVGEKPY 210

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q414955.9e-4354.23STS14 protein OS=Solanum tuberosum OX=4113 GN=STS14 PE=2 SV=1[more]
P070535.0e-2640.88Pathogenesis-related protein 1B OS=Nicotiana tabacum OX=4097 PE=2 SV=1[more]
P090421.9e-2540.25Pathogenesis-related protein 1C OS=Nicotiana tabacum OX=4097 PE=2 SV=3[more]
Q403744.3e-2540.00Pathogenesis-related protein PR-1 OS=Medicago truncatula OX=3880 GN=PR-1 PE=2 SV... [more]
P082991.6e-2438.79Pathogenesis-related protein 1A OS=Nicotiana tabacum OX=4097 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
AT5G66590.15.0e-4558.04CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 pro... [more]
AT4G33720.16.1e-2742.11CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 pro... [more]
AT5G57625.12.6e-2537.76CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 pro... [more]
AT1G01310.14.8e-2440.43CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 pro... [more]
AT4G25790.11.4e-2336.96CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 pro... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001283Cysteine-rich secretory protein-relatedPRINTSPR00837V5TPXLIKEcoord: 97..110
score: 29.7
coord: 121..137
score: 58.95
coord: 149..162
score: 42.78
IPR001283Cysteine-rich secretory protein-relatedPANTHERPTHR10334CYSTEINE-RICH SECRETORY PROTEIN-RELATEDcoord: 26..166
IPR014044CAP domainSMARTSM00198SCP_3coord: 26..162
e-value: 3.2E-30
score: 116.4
IPR014044CAP domainPFAMPF00188CAPcoord: 32..147
e-value: 1.1E-15
score: 58.5
IPR035940CAP superfamilyGENE3D3.40.33.10CAPcoord: 21..166
e-value: 5.3E-32
score: 113.0
IPR035940CAP superfamilySUPERFAMILY55797PR-1-likecoord: 18..166
NoneNo IPR availablePANTHERPTHR10334:SF385CAP (CYSTEINE-RICH SECRETORY PROTEINS, ANTIGEN 5, AND PATHOGENESIS-RELATED 1 PROTEIN) SUPERFAMILY PROTEINcoord: 26..166
NoneNo IPR availableCDDcd05381CAP_PR-1coord: 28..166
e-value: 1.73765E-59
score: 179.367

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G005590.1CmaCh02G005590.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005615 extracellular space
cellular_component GO:0016020 membrane