CmaCh01G011290 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh01G011290
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein translation factor SUI1 homolog
Location	Cma_Chr01: 8277250 .. 8278581 (+)
RNA-Seq Expression	CmaCh01G011290
Synteny	CmaCh01G011290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGAGAACAATCCTGACCCCTTTCGAATGCGAATTCGTGGTGGAAACAAATGGATTCTTGCCGCTTTCCCCAAAATCTCTATAAATAATCCCCATACCGCTGGGCGTTGGTCTCATCATTCGTTGTCCGTTCTCTGTTCTTCACTACCTTCTCGTAAGTCTTTGATCCCTTCTTAATAGTTGACTCATTTCCTTTTTATTCTGATTGTTAGCTCTACATAATTTGTGTTCTTGTTTTTGCTTCTGGATTCTGTCTTCTGTGTTTGTCTTTTTGCTACTTCGATTTGTGGTTTATGCTTATTTGATTTGATGATTTGATGATCGTTGGGAGATTTCTGTTTGGATTGGATTTTAGTTTGTATCGGCCGGATTCTCGTCTTGCTTGGTAAGATTCTGTTGTTCGGTTCGTTTATTAAAGTCATGGATGATCTAGGGTTTTTCTTTCTGTGTTCGTTGCTTTGTTGTTTGAGCTTTAGGGTTTATGTGTATTTGGTTAGATGATCGTCAGGAGATTCATAGTTATGGATTCTTGTCGTGCTGTTCTCTTAATGTTTAGATTGCTTTTTAGTTTGTATCGGCCGGATTCTCGTCTTGCTTTGTAAGATTCTGTTGTTCGGTTCATTTATTGAAGTCATGGATGATCTAGGGTTTTTCTTTCTGGATTCGTTGTTTTGTTGTTTGAGCTTTAGGTTTTATGAGTATATGGTTAGGTGATCGTCAGAAGATTCATCGTTGTTCTCTTCATCTGTTCAAGTGTTTTCTTATACGAAAAACCGTTTAATCCGGCCATGGATGAACATGGGATTTGTTTCTTGTTCGTTGGTATCGATTGTATCTGATCCGCTTTGGGGTTTCTGTTGATTGGAAGCCATTGATTGTGGGAGTTGGCATTTAAAGATAAGCCAAGGCTTACTTATAATCCATATTGATTTTGATATCTATGATGTGTTCTAGATTGTGGGTGTTCGAGTTTTGATCGAAACAAGGTTGATGGTTGAAATAGACGTCCAAATCCCATCCGCTTACGATCCATTCGCAGACGCCAAGGATTCCGATGCCCCGGGAGGCAAAGAGTATGTTCATATCCGCGTGCAGCAGAGAAATGGCAAGAAGTGCTTGACAACAGTCCAGGGTCTGAAGAAGGATTTCAGCTACGAGAAGATCCTCAAAGACGTGAAGAAGGAGTTCTGTTGTAATGGTAACGTCGTCCAAGACAAAGAACTGGGGAAGATAATTCAGCTTCAAGGCGATCAGCGCAAGAACGTGTCTCAGTTCCTGGTTCAGGCTGGGATTGTGAAGAAGGATCAGATCAAGATCCATGGATTTTAA

mRNA sequence

ATGTTCGAGAACAATCCTGACCCCTTTCGAATGCGAATTCGTGGTGGAAACAAATGGATTCTTGCCGCTTTCCCCAAAATCTCTATAAATAATCCCCATACCGCTGGGCGTTGGTCTCATCATTCGTTGTCCGTTCTCTGTTCTTCACTACCTTCTCACGTCCAAATCCCATCCGCTTACGATCCATTCGCAGACGCCAAGGATTCCGATGCCCCGGGAGGCAAAGAGTATGTTCATATCCGCGTGCAGCAGAGAAATGGCAAGAAGTGCTTGACAACAGTCCAGGGTCTGAAGAAGGATTTCAGCTACGAGAAGATCCTCAAAGACGTGAAGAAGGAGTTCTGTTGTAATGGTAACGTCGTCCAAGACAAAGAACTGGGGAAGATAATTCAGCTTCAAGGCGATCAGCGCAAGAACGTGTCTCAGTTCCTGGTTCAGGCTGGGATTGTGAAGAAGGATCAGATCAAGATCCATGGATTTTAA

Coding sequence (CDS)

ATGTTCGAGAACAATCCTGACCCCTTTCGAATGCGAATTCGTGGTGGAAACAAATGGATTCTTGCCGCTTTCCCCAAAATCTCTATAAATAATCCCCATACCGCTGGGCGTTGGTCTCATCATTCGTTGTCCGTTCTCTGTTCTTCACTACCTTCTCACGTCCAAATCCCATCCGCTTACGATCCATTCGCAGACGCCAAGGATTCCGATGCCCCGGGAGGCAAAGAGTATGTTCATATCCGCGTGCAGCAGAGAAATGGCAAGAAGTGCTTGACAACAGTCCAGGGTCTGAAGAAGGATTTCAGCTACGAGAAGATCCTCAAAGACGTGAAGAAGGAGTTCTGTTGTAATGGTAACGTCGTCCAAGACAAAGAACTGGGGAAGATAATTCAGCTTCAAGGCGATCAGCGCAAGAACGTGTCTCAGTTCCTGGTTCAGGCTGGGATTGTGAAGAAGGATCAGATCAAGATCCATGGATTTTAA

Protein sequence

MFENNPDPFRMRIRGGNKWILAAFPKISINNPHTAGRWSHHSLSVLCSSLPSHVQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF

Homology

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BLAST of CmaCh01G011290 vs. ExPASy Swiss-Prot
Match: Q94JV4 (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g54290 PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.0e-43
Identity = 85/108 (78.70%), Postives = 96/108 (88.89%), Query Frame = 0


Query: 54  VQIPSAYDPFADAKDSDAPGG-KEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKK 113
           VQ+P+A+DPFADA   D+  G KEYVHIRVQQRNG+K LTTVQGLKK++SY KILKD+KK
Sbjct: 6   VQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKK 65

Query: 114 EFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 161
           EFCCNG VVQD ELG++IQLQGDQRKNVS FLVQAG+VKKD IKIHGF
Sbjct: 66  EFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

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BLAST of CmaCh01G011290 vs. ExPASy Swiss-Prot
Match: P41568 (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At4g27130 PE=1 SV=2)

HSP 1 Score: 174.5 bits (441), Expect = 9.8e-43
Identity = 84/107 (78.50%), Postives = 95/107 (88.79%), Query Frame = 0


Query: 55  QIPSAYDPFADAKDSDAPGG-KEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKE 114
           Q+P+A+DPFADA   D+  G KEYVHIRVQQRNG+K LTTVQGLKK++SY KILKD+KKE
Sbjct: 7   QVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKE 66

Query: 115 FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 161
           FCCNG VVQD ELG++IQLQGDQRKNVS FLVQAG+VKKD IKIHGF
Sbjct: 67  FCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

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BLAST of CmaCh01G011290 vs. ExPASy Swiss-Prot
Match: P56330 (Protein translation factor SUI1 homolog OS=Zea mays OX=4577 GN=TIF PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 9.8e-43
Identity = 83/110 (75.45%), Postives = 96/110 (87.27%), Query Frame = 0


Query: 54  VQIPSAYDPFADAKDSD---APGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDV 113
           +QIP+A+DPFA+A   D   A G K+YVH+R+QQRNG+K LTTVQGLKK+FSY KILKD+
Sbjct: 6   IQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYSKILKDL 65

Query: 114 KKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 161
           KKEFCCNG VVQD ELG++IQLQGDQRKNVS FLVQAGIVKK+ IKIHGF
Sbjct: 66  KKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115

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BLAST of CmaCh01G011290 vs. ExPASy Swiss-Prot
Match: A6MZM2 (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica OX=39946 GN=GOS2 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 9.8e-43
Identity = 83/110 (75.45%), Postives = 96/110 (87.27%), Query Frame = 0


Query: 54  VQIPSAYDPFADAKDSD---APGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDV 113
           +QIP+A+DPFA+A   D   A G K+YVH+R+QQRNG+K LTTVQGLKK+FSY KILKD+
Sbjct: 6   IQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDL 65

Query: 114 KKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 161
           KKEFCCNG VVQD ELG++IQLQGDQRKNVS FLVQAGIVKK+ IKIHGF
Sbjct: 66  KKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115

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BLAST of CmaCh01G011290 vs. ExPASy Swiss-Prot
Match: Q0D5W6 (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=GOS2 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 9.8e-43
Identity = 83/110 (75.45%), Postives = 96/110 (87.27%), Query Frame = 0


Query: 54  VQIPSAYDPFADAKDSD---APGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDV 113
           +QIP+A+DPFA+A   D   A G K+YVH+R+QQRNG+K LTTVQGLKK+FSY KILKD+
Sbjct: 6   IQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDL 65

Query: 114 KKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 161
           KKEFCCNG VVQD ELG++IQLQGDQRKNVS FLVQAGIVKK+ IKIHGF
Sbjct: 66  KKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115

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BLAST of CmaCh01G011290 vs. ExPASy TrEMBL
Match: A0A6J1IX56 (protein translation factor SUI1 homolog 2-like OS=Cucurbita maxima OX=3661 GN=LOC111480714 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 7.5e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 54  VQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKE 113
           VQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKE
Sbjct: 6   VQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKE 65

Query: 114 FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 161
           FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF
Sbjct: 66  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 112

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BLAST of CmaCh01G011290 vs. ExPASy TrEMBL
Match: A0A6J1FPT4 (protein translation factor SUI1 homolog 2-like OS=Cucurbita moschata OX=3662 GN=LOC111445876 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 7.5e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 54  VQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKE 113
           VQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKE
Sbjct: 6   VQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKE 65

Query: 114 FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 161
           FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF
Sbjct: 66  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 112

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BLAST of CmaCh01G011290 vs. ExPASy TrEMBL
Match: A0A5D3DHR8 (SUI1 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001030 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 3.5e-51
Identity = 102/106 (96.23%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 55  QIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKEF 114
           QIPSA+DPFADAKDSDAPG KEYVHIRVQQRNGKKCLTTVQGLKK+FSYEKILKDVKKEF
Sbjct: 45  QIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEF 104

Query: 115 CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 161
           CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAG+VKKDQIKIHGF
Sbjct: 105 CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 150

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BLAST of CmaCh01G011290 vs. ExPASy TrEMBL
Match: A0A0A0K771 (SUI1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G209580 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 3.5e-51
Identity = 102/106 (96.23%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 55  QIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKEF 114
           QIPSA+DPFADAKDSDAPG KEYVHIRVQQRNGKKCLTTVQGLKK+FSYEKILKDVKKEF
Sbjct: 7   QIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEF 66

Query: 115 CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 161
           CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAG+VKKDQIKIHGF
Sbjct: 67  CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

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BLAST of CmaCh01G011290 vs. ExPASy TrEMBL
Match: A0A1S3BI45 (protein translation factor SUI1 homolog 1-like OS=Cucumis melo OX=3656 GN=LOC103490142 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 3.5e-51
Identity = 102/106 (96.23%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 55  QIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKEF 114
           QIPSA+DPFADAKDSDAPG KEYVHIRVQQRNGKKCLTTVQGLKK+FSYEKILKDVKKEF
Sbjct: 7   QIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEF 66

Query: 115 CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 161
           CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAG+VKKDQIKIHGF
Sbjct: 67  CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

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BLAST of CmaCh01G011290 vs. NCBI nr
Match: KAG7015195.1 (Protein translation factor SUI1-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 289.3 bits (739), Expect = 2.1e-74
Identity = 152/207 (73.43%), Postives = 154/207 (74.40%), Query Frame = 0


Query: 1   MFENNPDPFRMRIRGGNKWILAAFPKISINNPHTAGRWSHHSLSVLCSSLPS-------- 60
           MFENNPDP RMRIR GN  ILAAFPKISINNP+TA RWSHHSLSVLCSS+PS        
Sbjct: 1   MFENNPDPIRMRIRDGNIRILAAFPKISINNPYTAERWSHHSLSVLCSSVPSLVDDLRLG 60

Query: 61  ---------------------------------------HVQIPSAYDPFADAKDSDAPG 120
                                                   VQIPSAYDPFADAKDSDAPG
Sbjct: 61  LSLYRPDSRLACLDSVVRFYEYMIVGVRVLIQTRLMVEIDVQIPSAYDPFADAKDSDAPG 120

Query: 121 GKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQ 161
           GKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQ
Sbjct: 121 GKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQ 180

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BLAST of CmaCh01G011290 vs. NCBI nr
Match: XP_022940170.1 (protein translation factor SUI1 homolog 2-like [Cucurbita moschata] >XP_022981656.1 protein translation factor SUI1 homolog 2-like [Cucurbita maxima] >XP_022981658.1 protein translation factor SUI1 homolog 2-like [Cucurbita maxima] >XP_023525155.1 protein translation factor SUI1 homolog 2-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023525156.1 protein translation factor SUI1 homolog 2-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023525157.1 protein translation factor SUI1 homolog 2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 219.9 bits (559), Expect = 1.5e-53
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 54  VQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKE 113
           VQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKE
Sbjct: 6   VQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKE 65

Query: 114 FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 161
           FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF
Sbjct: 66  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 112

[Close]

BLAST of CmaCh01G011290 vs. NCBI nr
Match: KAG6607799.1 (AUGMIN subunit 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 218.8 bits (556), Expect = 3.4e-53
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 54  VQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKE 113
           VQIPSAYDPFADA+DSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKE
Sbjct: 454 VQIPSAYDPFADARDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKE 513

Query: 114 FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 161
           FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF
Sbjct: 514 FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 560

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BLAST of CmaCh01G011290 vs. NCBI nr
Match: KAF3453464.1 (hypothetical protein FNV43_RR03904 [Rhamnella rubrinervis])

HSP 1 Score: 212.6 bits (540), Expect = 2.5e-51
Identity = 102/106 (96.23%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 55  QIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKEF 114
           QIPSA+DPFA+AKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKD+KKEF
Sbjct: 7   QIPSAFDPFAEAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDLKKEF 66

Query: 115 CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 161
           CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGI+KKDQIKIHGF
Sbjct: 67  CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGILKKDQIKIHGF 112

[Close]

BLAST of CmaCh01G011290 vs. NCBI nr
Match: XP_004139787.1 (protein translation factor SUI1 homolog 1 [Cucumis sativus] >XP_008447738.1 PREDICTED: protein translation factor SUI1 homolog 1-like [Cucumis melo] >XP_038899382.1 protein translation factor SUI1 homolog 1-like [Benincasa hispida] >KGN44162.1 hypothetical protein Csa_015864 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 7.2e-51
Identity = 102/106 (96.23%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 55  QIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKEF 114
           QIPSA+DPFADAKDSDAPG KEYVHIRVQQRNGKKCLTTVQGLKK+FSYEKILKDVKKEF
Sbjct: 7   QIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEF 66

Query: 115 CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 161
           CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAG+VKKDQIKIHGF
Sbjct: 67  CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

[Close]

BLAST of CmaCh01G011290 vs. TAIR 10
Match: AT5G54940.1 (Translation initiation factor SUI1 family protein )

HSP 1 Score: 196.1 bits (497), Expect = 2.2e-50
Identity = 92/107 (85.98%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 54  VQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKE 113
           +QIPSAYDPFA+AKDSDAPG KE +HIR+QQRNGKK LTTVQGLKK++SYE+ILKD+KK+
Sbjct: 6   IQIPSAYDPFAEAKDSDAPGAKENIHIRIQQRNGKKSLTTVQGLKKEYSYERILKDLKKD 65

Query: 114 FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 161
           FCCNGNVVQDKELGKIIQLQGDQRK VSQFLVQ GI KKDQIKIHGF
Sbjct: 66  FCCNGNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112

[Close]

BLAST of CmaCh01G011290 vs. TAIR 10
Match: AT5G54940.2 (Translation initiation factor SUI1 family protein )

HSP 1 Score: 196.1 bits (497), Expect = 2.2e-50
Identity = 92/107 (85.98%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 54  VQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKE 113
           +QIPSAYDPFA+AKDSDAPG KE +HIR+QQRNGKK LTTVQGLKK++SYE+ILKD+KK+
Sbjct: 6   IQIPSAYDPFAEAKDSDAPGAKENIHIRIQQRNGKKSLTTVQGLKKEYSYERILKDLKKD 65

Query: 114 FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 161
           FCCNGNVVQDKELGKIIQLQGDQRK VSQFLVQ GI KKDQIKIHGF
Sbjct: 66  FCCNGNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112

[Close]

BLAST of CmaCh01G011290 vs. TAIR 10
Match: AT1G54290.1 (Translation initiation factor SUI1 family protein )

HSP 1 Score: 176.8 bits (447), Expect = 1.4e-44
Identity = 85/108 (78.70%), Postives = 96/108 (88.89%), Query Frame = 0


Query: 54  VQIPSAYDPFADAKDSDAPGG-KEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKK 113
           VQ+P+A+DPFADA   D+  G KEYVHIRVQQRNG+K LTTVQGLKK++SY KILKD+KK
Sbjct: 6   VQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKK 65

Query: 114 EFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 161
           EFCCNG VVQD ELG++IQLQGDQRKNVS FLVQAG+VKKD IKIHGF
Sbjct: 66  EFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]

BLAST of CmaCh01G011290 vs. TAIR 10
Match: AT4G27130.1 (Translation initiation factor SUI1 family protein )

HSP 1 Score: 174.5 bits (441), Expect = 6.9e-44
Identity = 84/107 (78.50%), Postives = 95/107 (88.79%), Query Frame = 0


Query: 55  QIPSAYDPFADAKDSDAPGG-KEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKE 114
           Q+P+A+DPFADA   D+  G KEYVHIRVQQRNG+K LTTVQGLKK++SY KILKD+KKE
Sbjct: 7   QVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKE 66

Query: 115 FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 161
           FCCNG VVQD ELG++IQLQGDQRKNVS FLVQAG+VKKD IKIHGF
Sbjct: 67  FCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]

BLAST of CmaCh01G011290 vs. TAIR 10
Match: AT5G54760.1 (Translation initiation factor SUI1 family protein )

HSP 1 Score: 174.1 bits (440), Expect = 9.1e-44
Identity = 84/107 (78.50%), Postives = 95/107 (88.79%), Query Frame = 0


Query: 55  QIPSAYDPFADAKDSDAPGG-KEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKE 114
           Q+P+A+DPFADA   D+  G KEYVHIRVQQRNG+K LTTVQGLKK++SY KILKD+KKE
Sbjct: 7   QVPTAFDPFADANVEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKE 66

Query: 115 FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 161
           FCCNG VVQD ELG++IQLQGDQRKNVS FLVQAG+VKKD IKIHGF
Sbjct: 67  FCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

The following BLAST results are available for this feature:

BLAST of CmaCh01G011290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JV4	2.0e-43	78.70	Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]
P41568	9.8e-43	78.50	Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At4...	[more]
P56330	9.8e-43	75.45	Protein translation factor SUI1 homolog OS=Zea mays OX=4577 GN=TIF PE=3 SV=1	[more]
A6MZM2	9.8e-43	75.45	Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica OX=39946 G...	[more]
Q0D5W6	9.8e-43	75.45	Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica OX=39947...	[more]

BLAST of CmaCh01G011290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IX56	7.5e-54	100.00	protein translation factor SUI1 homolog 2-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FPT4	7.5e-54	100.00	protein translation factor SUI1 homolog 2-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A5D3DHR8	3.5e-51	96.23	SUI1 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0K771	3.5e-51	96.23	SUI1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G209580 PE=3 S...	[more]
A0A1S3BI45	3.5e-51	96.23	protein translation factor SUI1 homolog 1-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of CmaCh01G011290 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015195.1	2.1e-74	73.43	Protein translation factor SUI1-like 1, partial [Cucurbita argyrosperma subsp. a...	[more]
XP_022940170.1	1.5e-53	100.00	protein translation factor SUI1 homolog 2-like [Cucurbita moschata] >XP_02298165...	[more]
KAG6607799.1	3.4e-53	99.07	AUGMIN subunit 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAF3453464.1	2.5e-51	96.23	hypothetical protein FNV43_RR03904 [Rhamnella rubrinervis]	[more]
XP_004139787.1	7.2e-51	96.23	protein translation factor SUI1 homolog 1 [Cucumis sativus] >XP_008447738.1 PRED...	[more]

BLAST of CmaCh01G011290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54940.1	2.2e-50	85.98	Translation initiation factor SUI1 family protein	[more]
AT5G54940.2	2.2e-50	85.98	Translation initiation factor SUI1 family protein	[more]
AT1G54290.1	1.4e-44	78.70	Translation initiation factor SUI1 family protein	[more]
AT4G27130.1	6.9e-44	78.50	Translation initiation factor SUI1 family protein	[more]
AT5G54760.1	9.1e-44	78.50	Translation initiation factor SUI1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005874	Eukaryotic translation initiation factor SUI1	TIGRFAM	TIGR01160	TIGR01160	coord: 54..160 e-value: 1.0E-50 score: 168.9
IPR005874	Eukaryotic translation initiation factor SUI1	CDD	cd11566	eIF1_SUI1	coord: 76..159 e-value: 1.14989E-50 score: 155.0
None	No IPR available	GENE3D	3.30.780.10		coord: 41..160 e-value: 3.6E-45 score: 155.3
None	No IPR available	PANTHER	PTHR10388:SF56	BNAA10G09260D PROTEIN	coord: 53..160
None	No IPR available	PANTHER	PTHR10388	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1	coord: 53..160
IPR001950	SUI1 domain	PFAM	PF01253	SUI1	coord: 75..149 e-value: 9.5E-24 score: 83.7
IPR001950	SUI1 domain	PROSITE	PS50296	SUI1	coord: 78..148 score: 22.878408
IPR036877	SUI1 domain superfamily	SUPERFAMILY	55159	eIF1-like	coord: 49..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G011290.1	CmaCh01G011290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
molecular_function	GO:0003743	translation initiation factor activity