CmaCh01G004730 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCATCGTGGGATTCAGAGATTGAGCCAAGGATTATTGTAATTAGAAATTGAGAATTAGCGATCGATTTCCTGTGTTCTTCAAAAATTTCTCAACCAGAGTGGGGAAGATTATTCTGGATTTACTTCCAAACGCCCAGCGGATTTCCGATTTGGAGATTTATGCTTTGATTTTGTTCATCTTTTTGAATTCTTAACAAATCTATGGTTTTGTTTTTCTATCTCTGAATCTCTACCTTCTTCCTTCTCAATGGGATTCACCATCTCCGATGACTTGTTGGGTACTTTCGTCCCGATTTTCGTTTATTGGTTCTATTCTGGGATTTACGTGATTCTCGGTTTCTTCGAGAATTACCGACTGCACTCCAAGAAAGACGAGGATGAGAAGAACTTGGTTTCAAAATCCACTGTGGTTCGAGGCGTTCTCTTTCAACAATTCATTCAGGCTATTGTCGCCATCATCCTCTTTAAGGTCAGCTCCTACTTTCTATTTAATTTCTTTGCTAGTATTGCAATTAATAATCATCGTCGTCGTCGTCGCACTTGTCGTTATTACTGTAATTTAGTTTATTTCTGATCCTAATTATTGGTGGAACCTGCCCTAGAAAATTTCAACTGGGATTCATTTTGCTCATACACTTTGGTATAACTGTAGTACGATCTTCCTAAGATTTCCTTAGTTTAGCTACTGAGATTGAAAGTTTTGTTGTCTGTGGACCATTTGAGTTCTGACAAAATTAAAGTAACAACTCCTCTTCTCTTTATATGTGTTTTGATCGAAATTAGAGTCTGTCACACCACTGGACGCAGGGGTGAAGCCATCGCAGCAATTTACCATTTGCAAAATTTCGTTTTTTATATAATTAAACACTGCATATTTAAAAGAACATCTATTGCTAATGCTGGCAAAGTGAAAATCATTTTTTGTTACTGTAATTTGAATTGATGAAACAAAAATCTGAAAATCTTATAATTTAGTAGTCAACTCGAAAATTTCGATTCCATTCAGGAACAAAAGGGTTGATGATTCAAGCCGGAAATTGGAAGGATAAACTTGCAGTTTTTAGCATCCACTGTAAAGTTATATTAGTTGGTGTTAAGCTGTTAGCTTTTGACTTTTAAGTTTTTTGGATTTCAAACTCTAGGAATAGAGGTTCATAAGGAAAGAGTTTGGATGAATAATTTCAAAGCTGTGATCGATGGATTTGAATAAAAGTTTTATGCTATTCACCCCTTTTTTTATTCTTAAATTCCCTTTGAGGTTATCGTTTGGTTACAAATCGAATTGGTCAAAACAACACGGTATATCTCAATTGTATGAAAATTTAATCGTACTTTAGCTATAATTCGATTCTCTTGGATTTGTCTATGTAGTTTAGGTTACATATTTATTTGTGTAATCTTTAATGTTTTGGTTTACTTATATATATGTTTGAAAAAAAATATCCTCAAGAAGTATTGGGACAGTACCAATCCCCTTACGTCTTCTGCATTGTAGGAAGTCAACAACTCGTACGAGCTAAAACCTTGGTTCCGTACAATTGTGTCTTGTGTGTTGGATGTATTTACTACAATGTTATTGCTATTGCTTCTAAGCAATCTCTCTTTTTCTTTTTTCCTGTGAGTTTCATGCTAAATGAGATGTAGAACTGTAGTTCTTGTTGTGGATGTTCGTGTGAAATATAATTTCTGGAGTAAAACTATTATTAAAGTTAGCCTCATCTAAGTGCTGTTAAATGTGGCTTTGATCCAGTGGTTAAAGTGGCAAGTCATGAACTTAAATGTTTTCAGCTTATAGCATACTCCCAATTCTGGAAAGGAAAATGGAATCAATGTTAGATTCTGGCATTACTTACTGATATCATGTGGGTTACCAGCCCTGCACTTGCATCCTAGTTTGTATCCAAATTTACAATTGCATCTTGTTATGTTCAGGTGACTGGAAATGATGATGGGAGCATTGCAGTTCCAAAATCCTGGCCAGTGGTTGTTCTTCAATTTCTAACCGCGATGTTCGTTTTGGACACATGGCAATACTTCGCACACAGATACATGCATCATAACAAGTTTCTGTTCAGACACATTCATTCTCAGCACCATAAGCTTGTTGTTCCATATGCGTTTGGGGCTTTGTATAATCATCCTGTGGAAGGACTACTGCTCGACACAGTCGGTGGAGCGTTGTCGTTTCTAGTATCTGGTATGACTCCCAGAGTCTCTATCTTCTTCTTTTCCTTTGCAACTATTAAGACCGTAGACGATCACTGTGGATTATGGCTGCCTGGTAACCTCTTCCACGTCTTGTTTCGAAACAATACTGCATATCACGATGTCCACCATCAGCTATATGGTAGCAAGTTTAATTTCTCACAACCCTTCTTTGTTATATGGGATAGAATACTTGGAACCTACTTGCCTTACTCCTTGGAGAAGAGGGCAGGAGGCGGCTTTGAAGCACGGCCGAAGATTGAATAAATATTTTAAGCAGCCGTCTGTTGCTTATATTATATTATTTGTATCCCACAACAATATAATTTGTATATTACTCCTATTGTTGCGCTTTTTATACCCTTTTTTTTTCACATTGCCCTAACATAGGTTTGAAATATGAGTTGAGATGAGCTTAGGTTGTGTTTTGATATGTTTTCTTAAAACTTTTCTATGGCTTTAGATTAGTCACAATCATTGTGAGTGATGACTTTTGAAGAGCTGCTCCAATCCCAAGTGATAGCTTCTTCTTGTCTTTGTTAGAAAGGTTGTAGTTTCCAGTTATGCATCATAAGCTTGAACAGGGGCCATGTTTGGCTAGGTTGATGGGTTGATGAAGCTTTGGAACTAGATGGTTTGGTTTGGTTTGGTTTGGTTTGTTTGGACGCATGTTCGGAAATGATTTTGGAATGATTGAAATTACTATTCCGAAAAGGTGGAAAAGCTATTCTCTTATCTTATAGGTTGGATATTTGGAACATTTTAAATTTTATTTTGATAACGCTAGCGTTGTGTGTCGATCTTTGATCTCTATTACATGTTATATTTAATTGGAATCGTGATTACGTC TTCATCGTGGGATTCAGAGATTGAGCCAAGGATTATTGTAATTAGAAATTGAGAATTAGCGATCGATTTCCTGTGTTCTTCAAAAATTTCTCAACCAGAGTGGGGAAGATTATTCTGGATTTACTTCCAAACGCCCAGCGGATTTCCGATTTGGAGATTTATGCTTTGATTTTGTTCATCTTTTTGAATTCTTAACAAATCTATGGTTTTGTTTTTCTATCTCTGAATCTCTACCTTCTTCCTTCTCAATGGGATTCACCATCTCCGATGACTTGTTGGGTACTTTCGTCCCGATTTTCGTTTATTGGTTCTATTCTGGGATTTACGTGATTCTCGGTTTCTTCGAGAATTACCGACTGCACTCCAAGAAAGACGAGGATGAGAAGAACTTGGTTTCAAAATCCACTGTGGTTCGAGGCGTTCTCTTTCAACAATTCATTCAGGCTATTGTCGCCATCATCCTCTTTAAGGTGACTGGAAATGATGATGGGAGCATTGCAGTTCCAAAATCCTGGCCAGTGGTTGTTCTTCAATTTCTAACCGCGATGTTCGTTTTGGACACATGGCAATACTTCGCACACAGATACATGCATCATAACAAGTTTCTGTTCAGACACATTCATTCTCAGCACCATAAGCTTGTTGTTCCATATGCGTTTGGGGCTTTGTATAATCATCCTGTGGAAGGACTACTGCTCGACACAGTCGGTGGAGCGTTGTCGTTTCTAGTATCTGGTATGACTCCCAGAGTCTCTATCTTCTTCTTTTCCTTTGCAACTATTAAGACCGTAGACGATCACTGTGGATTATGGCTGCCTGGTAACCTCTTCCACGTCTTGTTTCGAAACAATACTGCATATCACGATGTCCACCATCAGCTATATGGTAGCAAGTTTAATTTCTCACAACCCTTCTTTGTTATATGGGATAGAATACTTGGAACCTACTTGCCTTACTCCTTGGAGAAGAGGGCAGGAGGCGGCTTTGAAGCACGGCCGAAGATTGAATAAATATTTTAAGCAGCCGTCTGTTGCTTATATTATATTATTTGTATCCCACAACAATATAATTTGTATATTACTCCTATTGTTGCGCTTTTTATACCCTTTTTTTTTCACATTGCCCTAACATAGGTTTGAAATATGAGTTGAGATGAGCTTAGGTTGTGTTTTGATATGTTTTCTTAAAACTTTTCTATGGCTTTAGATTAGTCACAATCATTGTGAGTGATGACTTTTGAAGAGCTGCTCCAATCCCAAGTGATAGCTTCTTCTTGTCTTTGTTAGAAAGGTTGTAGTTTCCAGTTATGCATCATAAGCTTGAACAGGGGCCATGTTTGGCTAGGTTGATGGGTTGATGAAGCTTTGGAACTAGATGGTTTGGTTTGGTTTGGTTTGGTTTGTTTGGACGCATGTTCGGAAATGATTTTGGAATGATTGAAATTACTATTCCGAAAAGGTGGAAAAGCTATTCTCTTATCTTATAGGTTGGATATTTGGAACATTTTAAATTTTATTTTGATAACGCTAGCGTTGTGTGTCGATCTTTGATCTCTATTACATGTTATATTTAATTGGAATCGTGATTACGTC ATGGGATTCACCATCTCCGATGACTTGTTGGGTACTTTCGTCCCGATTTTCGTTTATTGGTTCTATTCTGGGATTTACGTGATTCTCGGTTTCTTCGAGAATTACCGACTGCACTCCAAGAAAGACGAGGATGAGAAGAACTTGGTTTCAAAATCCACTGTGGTTCGAGGCGTTCTCTTTCAACAATTCATTCAGGCTATTGTCGCCATCATCCTCTTTAAGGTGACTGGAAATGATGATGGGAGCATTGCAGTTCCAAAATCCTGGCCAGTGGTTGTTCTTCAATTTCTAACCGCGATGTTCGTTTTGGACACATGGCAATACTTCGCACACAGATACATGCATCATAACAAGTTTCTGTTCAGACACATTCATTCTCAGCACCATAAGCTTGTTGTTCCATATGCGTTTGGGGCTTTGTATAATCATCCTGTGGAAGGACTACTGCTCGACACAGTCGGTGGAGCGTTGTCGTTTCTAGTATCTGGTATGACTCCCAGAGTCTCTATCTTCTTCTTTTCCTTTGCAACTATTAAGACCGTAGACGATCACTGTGGATTATGGCTGCCTGGTAACCTCTTCCACGTCTTGTTTCGAAACAATACTGCATATCACGATGTCCACCATCAGCTATATGGTAGCAAGTTTAATTTCTCACAACCCTTCTTTGTTATATGGGATAGAATACTTGGAACCTACTTGCCTTACTCCTTGGAGAAGAGGGCAGGAGGCGGCTTTGAAGCACGGCCGAAGATTGAATAA MGFTISDDLLGTFVPIFVYWFYSGIYVILGFFENYRLHSKKDEDEKNLVSKSTVVRGVLFQQFIQAIVAIILFKVTGNDDGSIAVPKSWPVVVLQFLTAMFVLDTWQYFAHRYMHHNKFLFRHIHSQHHKLVVPYAFGALYNHPVEGLLLDTVGGALSFLVSGMTPRVSIFFFSFATIKTVDDHCGLWLPGNLFHVLFRNNTAYHDVHHQLYGSKFNFSQPFFVIWDRILGTYLPYSLEKRAGGGFEARPKIE Homology
BLAST of CmaCh01G004730 vs. ExPASy Swiss-Prot
Match: Q8VYI1 (Sphinganine C4-monooxygenase 1 OS=Arabidopsis thaliana OX=3702 GN=SBH1 PE=1 SV=1) HSP 1 Score: 408.7 bits (1049), Expect = 4.9e-113 Identity = 192/254 (75.59%), Postives = 223/254 (87.80%), Query Frame = 0
BLAST of CmaCh01G004730 vs. ExPASy Swiss-Prot
Match: Q9AST3 (Sphinganine C4-monooxygenase 2 OS=Arabidopsis thaliana OX=3702 GN=SBH2 PE=1 SV=1) HSP 1 Score: 399.1 bits (1024), Expect = 3.9e-110 Identity = 185/252 (73.41%), Postives = 218/252 (86.51%), Query Frame = 0
BLAST of CmaCh01G004730 vs. ExPASy Swiss-Prot
Match: B8B4W4 (Very-long-chain aldehyde decarbonylase GL1-9 OS=Oryza sativa subsp. indica OX=39946 GN=GL1-9 PE=3 SV=1) HSP 1 Score: 352.1 bits (902), Expect = 5.4e-96 Identity = 166/251 (66.14%), Postives = 202/251 (80.48%), Query Frame = 0
BLAST of CmaCh01G004730 vs. ExPASy Swiss-Prot
Match: Q0D4G3 (Very-long-chain aldehyde decarbonylase GL1-9 OS=Oryza sativa subsp. japonica OX=39947 GN=GL1-9 PE=2 SV=1) HSP 1 Score: 352.1 bits (902), Expect = 5.4e-96 Identity = 166/251 (66.14%), Postives = 202/251 (80.48%), Query Frame = 0
BLAST of CmaCh01G004730 vs. ExPASy Swiss-Prot
Match: O94298 (Sphingolipid C4-hydroxylase sur2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sur2 PE=3 SV=1) HSP 1 Score: 211.8 bits (538), Expect = 8.7e-54 Identity = 105/253 (41.50%), Postives = 148/253 (58.50%), Query Frame = 0
BLAST of CmaCh01G004730 vs. ExPASy TrEMBL
Match: A0A6J1KH66 (sphinganine C4-monooxygenase 1-like OS=Cucurbita maxima OX=3661 GN=LOC111493180 PE=3 SV=1) HSP 1 Score: 523.1 bits (1346), Expect = 6.5e-145 Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0
BLAST of CmaCh01G004730 vs. ExPASy TrEMBL
Match: A0A6J1GBQ9 (sphinganine C4-monooxygenase 1-like OS=Cucurbita moschata OX=3662 GN=LOC111452712 PE=3 SV=1) HSP 1 Score: 521.9 bits (1343), Expect = 1.5e-144 Identity = 251/253 (99.21%), Postives = 253/253 (100.00%), Query Frame = 0
BLAST of CmaCh01G004730 vs. ExPASy TrEMBL
Match: A0A5D3CZU2 (Sphinganine C4-monooxygenase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1327G00180 PE=3 SV=1) HSP 1 Score: 503.4 bits (1295), Expect = 5.4e-139 Identity = 240/253 (94.86%), Postives = 248/253 (98.02%), Query Frame = 0
BLAST of CmaCh01G004730 vs. ExPASy TrEMBL
Match: A0A1S3B426 (sphinganine C4-monooxygenase 1-like OS=Cucumis melo OX=3656 GN=LOC103485785 PE=3 SV=1) HSP 1 Score: 503.4 bits (1295), Expect = 5.4e-139 Identity = 240/253 (94.86%), Postives = 248/253 (98.02%), Query Frame = 0
BLAST of CmaCh01G004730 vs. ExPASy TrEMBL
Match: A0A6J1DY75 (sphinganine C4-monooxygenase 1-like OS=Momordica charantia OX=3673 GN=LOC111025684 PE=3 SV=1) HSP 1 Score: 501.9 bits (1291), Expect = 1.6e-138 Identity = 239/253 (94.47%), Postives = 249/253 (98.42%), Query Frame = 0
BLAST of CmaCh01G004730 vs. NCBI nr
Match: XP_022998593.1 (sphinganine C4-monooxygenase 1-like [Cucurbita maxima]) HSP 1 Score: 523.1 bits (1346), Expect = 1.3e-144 Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0
BLAST of CmaCh01G004730 vs. NCBI nr
Match: XP_023523598.1 (sphinganine C4-monooxygenase 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 522.3 bits (1344), Expect = 2.3e-144 Identity = 252/253 (99.60%), Postives = 253/253 (100.00%), Query Frame = 0
BLAST of CmaCh01G004730 vs. NCBI nr
Match: XP_022949326.1 (sphinganine C4-monooxygenase 1-like [Cucurbita moschata] >KAG6607119.1 Sphinganine C4-monooxygenase 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036810.1 Sphinganine C4-monooxygenase 2 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 521.9 bits (1343), Expect = 3.0e-144 Identity = 251/253 (99.21%), Postives = 253/253 (100.00%), Query Frame = 0
BLAST of CmaCh01G004730 vs. NCBI nr
Match: XP_008441706.1 (PREDICTED: sphinganine C4-monooxygenase 1-like [Cucumis melo] >KAA0032268.1 sphinganine C4-monooxygenase 1-like [Cucumis melo var. makuwa] >TYK17072.1 sphinganine C4-monooxygenase 1-like [Cucumis melo var. makuwa]) HSP 1 Score: 503.4 bits (1295), Expect = 1.1e-138 Identity = 240/253 (94.86%), Postives = 248/253 (98.02%), Query Frame = 0
BLAST of CmaCh01G004730 vs. NCBI nr
Match: XP_022159270.1 (sphinganine C4-monooxygenase 1-like [Momordica charantia]) HSP 1 Score: 501.9 bits (1291), Expect = 3.2e-138 Identity = 239/253 (94.47%), Postives = 249/253 (98.42%), Query Frame = 0
BLAST of CmaCh01G004730 vs. TAIR 10
Match: AT1G69640.1 (sphingoid base hydroxylase 1 ) HSP 1 Score: 408.7 bits (1049), Expect = 3.5e-114 Identity = 192/254 (75.59%), Postives = 223/254 (87.80%), Query Frame = 0
BLAST of CmaCh01G004730 vs. TAIR 10
Match: AT1G14290.1 (sphingoid base hydroxylase 2 ) HSP 1 Score: 399.1 bits (1024), Expect = 2.7e-111 Identity = 185/252 (73.41%), Postives = 218/252 (86.51%), Query Frame = 0
BLAST of CmaCh01G004730 vs. TAIR 10
Match: AT2G29390.3 (sterol 4-alpha-methyl-oxidase 2-2 ) HSP 1 Score: 77.0 bits (188), Expect = 2.4e-14 Identity = 69/236 (29.24%), Postives = 108/236 (45.76%), Query Frame = 0
BLAST of CmaCh01G004730 vs. TAIR 10
Match: AT2G29390.2 (sterol 4-alpha-methyl-oxidase 2-2 ) HSP 1 Score: 77.0 bits (188), Expect = 2.4e-14 Identity = 69/236 (29.24%), Postives = 108/236 (45.76%), Query Frame = 0
BLAST of CmaCh01G004730 vs. TAIR 10
Match: AT2G29390.1 (sterol 4-alpha-methyl-oxidase 2-2 ) HSP 1 Score: 75.5 bits (184), Expect = 6.9e-14 Identity = 71/246 (28.86%), Postives = 110/246 (44.72%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|