CmaCh00G003200 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G003200
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Regulator of rDNA transcription protein 15
Location	Cma_Chr00: 25054446 .. 25055819 (+)
RNA-Seq Expression	CmaCh00G003200
Synteny	CmaCh00G003200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTGCCGGGCACACCGAGACCGGGGCAAGGGGAAAGCTTATTCGTTTCAGATCCTTGGCGCGACTTGCGCCGGTTTTGGTTTGGGCATCAGAGGGTGCACGAATGCTCCCCCCGACACAAAAGAGTTGGCAAACACGTTGGGTCGTTCGGTGTTGTTTAGGCATCGACAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTTCAGTGGACTTCTCGCGACGTCGCAGGCAGCGAACCGCCCACGTCGCCACGATCCGAACACTTCACCGGACCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAAAACATCTAAGGGCATCACAGACTTGTTATTGCCTCAAACTTCCTTGGCCTAAGCGGCCATAGTCCCTCTAAGAAGCTGGCCGCGGAGGGATTCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTTCACCGTGTTGAGTCAAATTAAGCCACAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCTGGCGGAGTCCTTAAAGCAACATCCGCCAATCCCTTGTCGACATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGGAAATGCTTTCGCAGTTGTTCGTCTTTCATAAATCCAAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCCCTGTTAATCATTACTCCGATCCCGAAGGCCAACAGAATAGGATCGAAATCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTAGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCGCCGGAGGCACGACCCGGCCAGTTAAGGCCAGGAGCGCATCGCCGACAGAAGGGACGAGCCAATCGGTGCTCACCATAGGCGGACCGATCGACCCAACCCAAGGTCCAACTACGAGCTTTTTAACTGCAACAACTTAA

mRNA sequence

ATGCTTTGCCGGGCACACCGAGACCGGGGCAAGGGGAAAGCTTATTCGTTTCAGATCCTTGGCGCGACTTGCGCCGGTTTTGGTTTGGGCATCAGAGGGTGCACGAATGCTCCCCCCGACACAAAAGAGTTGGCAAACACGTTGGGTCGCATCGACAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTGCTGGCGGAGTCCTTAAAGCAACATCCGCCAATCCCTTGTCGACATCGTTTATGGTTGAGACTAGGACGCGCCGGAGGCACGACCCGGCCAGTTAAGGCCAGGAGCGCATCGCCGACAGAAGGGACGAGCCAATCGGTGCTCACCATAGGCGGACCGATCGACCCAACCCAAGGTCCAACTACGAGCTTTTTAACTGCAACAACTTAA

Coding sequence (CDS)

ATGCTTTGCCGGGCACACCGAGACCGGGGCAAGGGGAAAGCTTATTCGTTTCAGATCCTTGGCGCGACTTGCGCCGGTTTTGGTTTGGGCATCAGAGGGTGCACGAATGCTCCCCCCGACACAAAAGAGTTGGCAAACACGTTGGGTCGCATCGACAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTGCTGGCGGAGTCCTTAAAGCAACATCCGCCAATCCCTTGTCGACATCGTTTATGGTTGAGACTAGGACGCGCCGGAGGCACGACCCGGCCAGTTAAGGCCAGGAGCGCATCGCCGACAGAAGGGACGAGCCAATCGGTGCTCACCATAGGCGGACCGATCGACCCAACCCAAGGTCCAACTACGAGCTTTTTAACTGCAACAACTTAA

Protein sequence

MLCRAHRDRGKGKAYSFQILGATCAGFGLGIRGCTNAPPDTKELANTLGRIDNDPSAGSPTETLLRLLLPLNDKVLAESLKQHPPIPCRHRLWLRLGRAGGTTRPVKARSASPTEGTSQSVLTIGGPIDPTQGPTTSFLTATT

Homology

[Close]

BLAST of CmaCh00G003200 vs. ExPASy Swiss-Prot
Match: P0C5Q0 (Putative uncharacterized protein YLR154W-F OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YLR154W-F PE=5 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 9.4e-05
Identity = 25/41 (60.98%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 39 PDTKELANTLGRIDNDPSAGSPTETLLRLLLPLNDKVLAES 80
          P  K   + L    NDPSAGSPTETLLRLL+PLND+V   S
Sbjct: 4  PKQKNPFSKLLNFFNDPSAGSPTETLLRLLVPLNDQVCPNS 44

[Close]

BLAST of CmaCh00G003200 vs. ExPASy TrEMBL
Match: A0A2N9IFN0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50755 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.8e-12
Identity = 58/121 (47.93%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 52  DNDPSAGSPTETLLRLLLPLNDKVLAES------------LKQH---------------- 111
           DNDPSAGSPTETLLRLLLPLNDKV   S              +H                
Sbjct: 498 DNDPSAGSPTETLLRLLLPLNDKVQWTSRDVAGSEPPTSPRSEHFTGPFNRQITPPTKNG 557

Query: 112 ---PPIPCR--------HRLWLRLGRAGGTTRPVKARSASPTEGTSQSVLTIGGPIDPTQ 134
              PPI  R        + +W      GGTTRPVKARSASP EGTS+ V T GGP+ PTQ
Sbjct: 558 HAPPPIESRKSSQSVNPYYVWT---CTGGTTRPVKARSASPVEGTSRPVHTRGGPLCPTQ 615

[Close]

BLAST of CmaCh00G003200 vs. ExPASy TrEMBL
Match: A0A0L9VE83 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g202400 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 64/144 (44.44%), Postives = 69/144 (47.92%), Query Frame = 0


Query: 41  TKELANTLGR--IDNDPSAGSPTETLLRLLLPLNDKV----------------------- 100
           TK +   LG   IDNDPSAG PT+TLLRLLLPLNDKV                       
Sbjct: 547 TKNVFRILGTNGIDNDPSAGLPTKTLLRLLLPLNDKVQWTSHHVTGSEPPTSPQSEHFTG 606

Query: 101 -----LAESLKQ-HPPIPCRHR----------LWLRLGRAGGTTRPVKARSASPTEGTSQ 144
                +A   K  H P P   R          +W      GGTTRPVKARSASP EGTS+
Sbjct: 607 PFNRQIAPPTKNGHAPPPIESRKISQSVNPYYVWT---CTGGTTRPVKARSASPAEGTSR 666

[Close]

BLAST of CmaCh00G003200 vs. ExPASy TrEMBL
Match: A0A2N9IDP5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50754 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 57/120 (47.50%), Postives = 62/120 (51.67%), Query Frame = 0


Query: 52  DNDPSAGSPTETLLRLLLPLNDKVLAES------------LKQH---------------- 111
           DNDPSAGSPTETLLRLLLPLNDKV   S              +H                
Sbjct: 491 DNDPSAGSPTETLLRLLLPLNDKVQWTSRDVAGSEPPTSPRSEHFTGPFNRQITPPTKNG 550

Query: 112 ---PPIPCR--------HRLWLRLGRAGGTTRPVKARSASPTEGTSQSVLTIGGPIDPTQ 133
              PPI  R        + +W      GGTTRPVKARSASP EGTS+ V T GGP+ PTQ
Sbjct: 551 HAPPPIESRKSSQSVNPYYVWT---CTGGTTRPVKARSASPVEGTSRPVHTRGGPLCPTQ 607

[Close]

BLAST of CmaCh00G003200 vs. ExPASy TrEMBL
Match: A0A2N9I9H1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50489 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 57/120 (47.50%), Postives = 62/120 (51.67%), Query Frame = 0


Query: 52  DNDPSAGSPTETLLRLLLPLNDKVLAES------------LKQH---------------- 111
           DNDPSAGSPTETLLRLLLPLNDKV   S              +H                
Sbjct: 491 DNDPSAGSPTETLLRLLLPLNDKVQWTSRDVAGSEPPTSPRSEHFTGPFNRQITPPTKNG 550

Query: 112 ---PPIPCR--------HRLWLRLGRAGGTTRPVKARSASPTEGTSQSVLTIGGPIDPTQ 133
              PPI  R        + +W      GGTTRPVKARSASP EGTS+ V T GGP+ PTQ
Sbjct: 551 HAPPPIESRKSSQSVNPYYVWT---CTGGTTRPVKARSASPVEGTSRPVHTRGGPLCPTQ 607

[Close]

BLAST of CmaCh00G003200 vs. ExPASy TrEMBL
Match: A0A1J7FP78 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_03599 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 9.1e-11
Identity = 55/118 (46.61%), Postives = 59/118 (50.00%), Query Frame = 0


Query: 54  DPSAGSPTETLLRLLLPLNDKV----------------------------LAESLKQ-HP 113
           D + GSPTETLLRLLLPLNDKV                            +A   K  H 
Sbjct: 598 DTAEGSPTETLLRLLLPLNDKVQWTSHNVAGSEPPTSPQSEHFTGPFNRQIAPPTKNGHA 657

Query: 114 PIPCRHR----------LWLRLGRAGGTTRPVKARSASPTEGTSQSVLTIGGPIDPTQ 133
           P P   R          +W     AGGTTRPVKARSASP EGTS+ V T GGPIDPTQ
Sbjct: 658 PPPIESRKSSQSVNPYYVW-TCNSAGGTTRPVKARSASPAEGTSRPVHTSGGPIDPTQ 714

[Close]

BLAST of CmaCh00G003200 vs. NCBI nr
Match: KOM53365.1 (hypothetical protein LR48_Vigan09g202400 [Vigna angularis])

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-11
Identity = 64/144 (44.44%), Postives = 69/144 (47.92%), Query Frame = 0


Query: 41  TKELANTLGR--IDNDPSAGSPTETLLRLLLPLNDKV----------------------- 100
           TK +   LG   IDNDPSAG PT+TLLRLLLPLNDKV                       
Sbjct: 547 TKNVFRILGTNGIDNDPSAGLPTKTLLRLLLPLNDKVQWTSHHVTGSEPPTSPQSEHFTG 606

Query: 101 -----LAESLKQ-HPPIPCRHR----------LWLRLGRAGGTTRPVKARSASPTEGTSQ 144
                +A   K  H P P   R          +W      GGTTRPVKARSASP EGTS+
Sbjct: 607 PFNRQIAPPTKNGHAPPPIESRKISQSVNPYYVWT---CTGGTTRPVKARSASPAEGTSR 666

[Close]

BLAST of CmaCh00G003200 vs. NCBI nr
Match: OIV89726.1 (hypothetical protein TanjilG_03599 [Lupinus angustifolius])

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-10
Identity = 55/118 (46.61%), Postives = 59/118 (50.00%), Query Frame = 0


Query: 54  DPSAGSPTETLLRLLLPLNDKV----------------------------LAESLKQ-HP 113
           D + GSPTETLLRLLLPLNDKV                            +A   K  H 
Sbjct: 598 DTAEGSPTETLLRLLLPLNDKVQWTSHNVAGSEPPTSPQSEHFTGPFNRQIAPPTKNGHA 657

Query: 114 PIPCRHR----------LWLRLGRAGGTTRPVKARSASPTEGTSQSVLTIGGPIDPTQ 133
           P P   R          +W     AGGTTRPVKARSASP EGTS+ V T GGPIDPTQ
Sbjct: 658 PPPIESRKSSQSVNPYYVW-TCNSAGGTTRPVKARSASPAEGTSRPVHTSGGPIDPTQ 714

[Close]

BLAST of CmaCh00G003200 vs. NCBI nr
Match: KEH17021.1 (senescence-associated protein [Medicago truncatula])

HSP 1 Score: 74.3 bits (181), Expect = 9.4e-10
Identity = 64/181 (35.36%), Postives = 69/181 (38.12%), Query Frame = 0


Query: 51  IDNDPSAGSPTETLLRLLLPLNDKV----------------------------LAESLKQ 110
           IDNDPSAGSPTETLLRLLLPLNDKV                            +A   K 
Sbjct: 693 IDNDPSAGSPTETLLRLLLPLNDKVQWTSHNVAGSGPPTSPQSEHFTGPFNRQIAPPTKN 752

Query: 111 -HPPIPCRHR----------LW-------------------------------------- 134
            H P P   R          +W                                      
Sbjct: 753 GHAPPPIESRKSSQSVNPYYVWTCGVLKATSADPWSASFMVETRTLFVFHKSKNFTSDYE 812

[Close]

BLAST of CmaCh00G003200 vs. NCBI nr
Match: KEH16994.1 (senescence-associated protein [Medicago truncatula])

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-09
Identity = 63/175 (36.00%), Postives = 68/175 (38.86%), Query Frame = 0


Query: 51  IDNDPSAGSPTETLLRLLLPLNDKV----------------------------LAESLKQ 110
           IDNDPSAGSPTETLLRLLLPLNDKV                            +A   K 
Sbjct: 677 IDNDPSAGSPTETLLRLLLPLNDKVQWTSHNVAGSGPPTSPQSEHFTGPFNRQIAPPTKN 736

Query: 111 -HPPIPCRHR----------LW-------------------------------------- 133
            H P P   R          +W                                      
Sbjct: 737 GHAPPPIESRKSSQSVNPYYVWTCGVLKATSADPWQMLSQLFVFHKSKNFTSDYEIRMPP 796

[Close]

BLAST of CmaCh00G003200 vs. NCBI nr
Match: PHT25982.1 (Protein TAR1 [Capsicum baccatum])

HSP 1 Score: 71.2 bits (173), Expect = 7.9e-09
Identity = 66/160 (41.25%), Postives = 70/160 (43.75%), Query Frame = 0


Query: 21  GATCAGFGLGIRG-CTNAPP-DTKELANTL------GRIDNDPSAGSPTETLLRLLLPLN 80
           GA   G G G R  C + PP  T +L NT           NDP AGSPTETLL LLLPLN
Sbjct: 87  GACPLGTGGGARAECRSTPPARTPQLLNTFPGAFGYAGFHNDPFAGSPTETLLPLLLPLN 146

Query: 81  DKV----------------------------LAESLKQ-HPPIPCRHR----------LW 134
           DKV                            +A   K  H P P   R          +W
Sbjct: 147 DKVQWTSHDVAGFEPPTSPRSKHFTGSFNRQIAPPTKNGHAPPPIESRKSSQSVNPYYVW 206

The following BLAST results are available for this feature:

BLAST of CmaCh00G003200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C5Q0	9.4e-05	60.98	Putative uncharacterized protein YLR154W-F OS=Saccharomyces cerevisiae (strain A...	[more]

BLAST of CmaCh00G003200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9IFN0	2.8e-12	47.93	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50755 PE=4 SV=1	[more]
A0A0L9VE83	1.1e-11	44.44	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g202400 PE...	[more]
A0A2N9IDP5	1.4e-11	47.50	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50754 PE=4 SV=1	[more]
A0A2N9I9H1	1.4e-11	47.50	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50489 PE=4 SV=1	[more]
A0A1J7FP78	9.1e-11	46.61	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_03599 PE=4 S...	[more]

BLAST of CmaCh00G003200 vs. NCBI nr


Match Name	E-value	Identity	Description
KOM53365.1	2.2e-11	44.44	hypothetical protein LR48_Vigan09g202400 [Vigna angularis]	[more]
OIV89726.1	1.9e-10	46.61	hypothetical protein TanjilG_03599 [Lupinus angustifolius]	[more]
KEH17021.1	9.4e-10	35.36	senescence-associated protein [Medicago truncatula]	[more]
KEH16994.1	1.2e-09	36.00	senescence-associated protein [Medicago truncatula]	[more]
PHT25982.1	7.9e-09	41.25	Protein TAR1 [Capsicum baccatum]	[more]

BLAST of CmaCh00G003200 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G003200.1	CmaCh00G003200.1	mRNA