CmaCh00G003160 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GATGCAACTTCTTAACCCGCCGCTGTTAAGACAGACTCCTGCTAATAGTTTAGCACACTCTTTGTTCTACTATGGGGTCGCACAAGGAGATAGATTTGACTCCTTGGTGTCCATTAGGTGGTCTGTGGACTTTGCTTTCTTCGGACTAATAGGTGTTGAATCTTACACGACAATTTCAATTTGGACTTGCTCGATCTGTTCAATTGAGACCTTATAATGATCATGCAATTGCCGGGACCAATTGCTGTTTTCTTTATGTATTCCTGATTTATCTCCACTAGGGCAGTCTAGTCTTCTGGTTGGTTCTTTGCCCCTAGTTTTGGTGTAGCTACTATATTTCTATTCATCTTTTACAAGGATTTCATAATTGGACATTGAACCCCTTTCATATGATGTTCCAGGTGTATTGAGCGCGGCTATGCGTCATGGTGCTGCCGTAGAAAATCCCTTATTTGAAGATGGTGATGGATGGTGCAAATAGATTCCTTCCGGATAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTACCAAATCTTTGAGGTTTTCCAATAAAAAAGGGGTTATTGCATTTCTTTCTCTTATTTGTACCAGTAACTGCTTTATGGATGAGTGCTTCCTCTTGGAGTAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTTGTTTCTCAGGAAATCCATGGGAAGATCCTGAATTTGAGACTTTCTATCTATACACCCAAAATCTTCTCTTAACCGAAGGGATTCGTACTTGGATGGCAGCTCAAGATCAGCCTCATGAAAACACACCTTGCCTTATATTACCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAATGGAACTTTCTCTTTTGGAACTTTATCTTTAGTTGGTCGTAACCAAGAAACAACCCCCTGGTTTCGGTGGGAATGCCCGACTTATCCATTTATATGGTAAACTATTGGGGGCGGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGTTCTGGGGCGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCTGAGACACCTTTCCGTACTTTGTGTCTAGAGTACTTCACTGAATTTCCTCTGCAGTATTGGGTTTTGACGATATTTATCATGCACTTCTGGGACCCGATACCCTTGATCTTTTTCATTCTTCCGTTATGTGTGGAAAGATAGAAAGCAAATGCCTACTTGGGTATTCACTAAATTAAGTATAAGTTTCTTCTAGTATTCAAAGCTCCTGATTTAGGGAGCGTATATGATACCTAGGCTCCGTGGGGAGGAGATCTAAGATCAATTACCAACTTTCACCTTAGCCCAAGTGTGATATTTGGGTATTTACTCAAATCTCTGGGGGAGAGAGAAGGATGGATTCTTAGTGTAGACGATTTGGAAGATATAGTTGGGGGGCATGTATGGTTAGTTAGGTTACATTTGTATACTTGGGGGAATTTAGCAGATCTTAACTAAACCGTTTGGCTCGCCGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTGATAGTTTAGGTGCTTTATCCCGTTTTGGTTTTATTGCTTGTTCTTTTGTCTGGCTTGTTCTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTGAGTGAGTTTTAGGGGCCGACTGGACCCGAAGCTTCTCAAGCTCAACCAACCGTTTACGTTTCTAGTTAGAGACCTCTTGTAGCTAACGTTGGATCAAGGACCTACTCTACTACTGGTTTAGGTAAATATCTAATGCGTTCTCCGACCATAGAGAAAAGTCATTTTGAGGGGAGAGATAGAAAGAAAGAGACTATGTGCTTTTGGGATCTGCGTGCTCCTTGGTTAGAACCAATAAGGGGTCCTAATCGTTTGGACTTGAGTAGGCAAAGATATACAACCTTGGCAAGACCTTACGCAGAATATATGACCCATGCTCCTTTAGGTTCTTTAAATTACGGGGGTGGCGTGTAGCTACCGAAATTAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTAGTTACCTCTCATTTTCTTCTAGGATTCCCCCCATTTGTAGGTCATTTATGGCATGCAGGAAGGGCTCGGGCAGCTGCCGCAGGATTTGAAAAAGGAATTGATCGACCTC GATGCAACTTCTTAACCCGCCGCTGTTAAGACAGACTCCTGCTAATAGTTTAGCACACTCTTTGTTCTACTATGGGGTCGCACAAGGAGATAGATTTGACTCCTTGGTGTCCATTAGGTGGTCTGTGGACTTTGCTTTCTTCGGACTAATAGGTGTATTGAGCGCGGCTATGCGTCATGGTGCTGCCGTAGAAAATCCCTTATTTGAAGATGGAAATCCATGGGAAGATCCTGAATTTGAGACTTTCTATCTATACACCCAAAATCTTCTCTTAACCGAAGGGATTCGTACTTGGATGGCAGCTCAAGATCAGCCTCATGAAAACACACCTTGCCTTATATTACCTGAGGAGGAAGGGCTCGGGCAGCTGCCGCAGGATTTGAAAAAGGAATTGATCGACCTC ATGCAACTTCTTAACCCGCCGCTGTTAAGACAGACTCCTGCTAATAGTTTAGCACACTCTTTGTTCTACTATGGGGTCGCACAAGGAGATAGATTTGACTCCTTGGTGTCCATTAGGTGGTCTGTGGACTTTGCTTTCTTCGGACTAATAGGTGTATTGAGCGCGGCTATGCGTCATGGTGCTGCCGTAGAAAATCCCTTATTTGAAGATGGAAATCCATGGGAAGATCCTGAATTTGAGACTTTCTATCTATACACCCAAAATCTTCTCTTAACCGAAGGGATTCGTACTTGGATGGCAGCTCAAGATCAGCCTCATGAAAACACACCTTGCCTTATATTACCTGAGGAGGAAGGGCTCGGGCAGCTGCCGCAGGATTTGAAAAAGGAATTGATCGACCTC MQLLNPPLLRQTPANSLAHSLFYYGVAQGDRFDSLVSIRWSVDFAFFGLIGVLSAAMRHGAAVENPLFEDGNPWEDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENTPCLILPEEEGLGQLPQDLKKELIDL Homology
BLAST of CmaCh00G003160 vs. ExPASy Swiss-Prot
Match: A8SE98 (Photosystem II D2 protein OS=Ceratophyllum demersum OX=4428 GN=psbD PE=3 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 1.4e-10 Identity = 34/43 (79.07%), Postives = 35/43 (81.40%), Query Frame = 0
BLAST of CmaCh00G003160 vs. ExPASy Swiss-Prot
Match: Q9MUW2 (Photosystem II D2 protein OS=Mesostigma viride OX=41882 GN=psbD PE=3 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 1.8e-10 Identity = 33/43 (76.74%), Postives = 35/43 (81.40%), Query Frame = 0
BLAST of CmaCh00G003160 vs. ExPASy Swiss-Prot
Match: Q4FFP4 (Photosystem II D2 protein OS=Acorus americanus OX=263995 GN=psbD PE=3 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 2.4e-10 Identity = 33/43 (76.74%), Postives = 35/43 (81.40%), Query Frame = 0
BLAST of CmaCh00G003160 vs. ExPASy Swiss-Prot
Match: Q3V539 (Photosystem II D2 protein OS=Acorus calamus OX=4465 GN=psbD PE=3 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 2.4e-10 Identity = 33/43 (76.74%), Postives = 35/43 (81.40%), Query Frame = 0
BLAST of CmaCh00G003160 vs. ExPASy Swiss-Prot
Match: A4QJB0 (Photosystem II D2 protein OS=Aethionema cordifolium OX=434059 GN=psbD PE=3 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 2.4e-10 Identity = 33/43 (76.74%), Postives = 35/43 (81.40%), Query Frame = 0
BLAST of CmaCh00G003160 vs. ExPASy TrEMBL
Match: A0A0D2QUQ7 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G234300 PE=3 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 2.9e-11 Identity = 53/111 (47.75%), Postives = 58/111 (52.25%), Query Frame = 0
BLAST of CmaCh00G003160 vs. ExPASy TrEMBL
Match: A0A7J7M888 (Uncharacterized protein OS=Kingdonia uniflora OX=39325 GN=GIB67_016478 PE=3 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 1.9e-10 Identity = 49/106 (46.23%), Postives = 55/106 (51.89%), Query Frame = 0
BLAST of CmaCh00G003160 vs. ExPASy TrEMBL
Match: A0A5D2QRR7 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A05G362700v1 PE=3 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 4.2e-10 Identity = 46/104 (44.23%), Postives = 52/104 (50.00%), Query Frame = 0
BLAST of CmaCh00G003160 vs. ExPASy TrEMBL
Match: A0A5D2GN19 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A05G358600v1 PE=3 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 4.2e-10 Identity = 46/104 (44.23%), Postives = 52/104 (50.00%), Query Frame = 0
BLAST of CmaCh00G003160 vs. ExPASy TrEMBL
Match: A0A151R6Q3 (Photosystem II D2 protein OS=Cajanus cajan OX=3821 GN=KK1_040553 PE=3 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 1.2e-09 Identity = 59/142 (41.55%), Postives = 68/142 (47.89%), Query Frame = 0
BLAST of CmaCh00G003160 vs. NCBI nr
Match: GEW63126.1 (photosystem II protein D2, chloroplastic [Tanacetum cinerariifolium]) HSP 1 Score: 79.7 bits (195), Expect = 2.1e-11 Identity = 60/121 (49.59%), Postives = 69/121 (57.02%), Query Frame = 0
BLAST of CmaCh00G003160 vs. NCBI nr
Match: KJB10925.1 (hypothetical protein B456_001G234300 [Gossypium raimondii]) HSP 1 Score: 78.2 bits (191), Expect = 6.1e-11 Identity = 53/111 (47.75%), Postives = 58/111 (52.25%), Query Frame = 0
BLAST of CmaCh00G003160 vs. NCBI nr
Match: KAG6539831.1 (hypothetical protein Mapa_018877 [Marchantia paleacea]) HSP 1 Score: 77.0 bits (188), Expect = 1.4e-10 Identity = 53/124 (42.74%), Postives = 61/124 (49.19%), Query Frame = 0
BLAST of CmaCh00G003160 vs. NCBI nr
Match: KAG6540409.1 (hypothetical protein Mapa_018313 [Marchantia paleacea]) HSP 1 Score: 77.0 bits (188), Expect = 1.4e-10 Identity = 53/124 (42.74%), Postives = 61/124 (49.19%), Query Frame = 0
BLAST of CmaCh00G003160 vs. NCBI nr
Match: KAF6151000.1 (hypothetical protein GIB67_016478 [Kingdonia uniflora]) HSP 1 Score: 75.5 bits (184), Expect = 3.9e-10 Identity = 49/106 (46.23%), Postives = 55/106 (51.89%), Query Frame = 0
BLAST of CmaCh00G003160 vs. TAIR 10
Match: ATCG00270.1 (photosystem II reaction center protein D ) HSP 1 Score: 66.6 bits (161), Expect = 1.7e-11 Identity = 33/43 (76.74%), Postives = 35/43 (81.40%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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