CmaCh00G003000 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G003000
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Photosystem II protein D1
Location	Cma_Chr00: 22717667 .. 22719153 (+)
RNA-Seq Expression	CmaCh00G003000
Synteny	CmaCh00G003000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGCAAATACTTCAGTGGTAGGGAGTCAGATGCTATCAAATTCATTGATAATAGATAATGCTACCAACCAAGAACACCAGTTCCTATTATTACTTTGCTTGGATCATTGGCTAATGCGCAATTTTGTAATGTCTTAGGGCATCCCATTAGTAAGCCGACTTGGATCGATTCGTCTTTTCTATTATTGATCGATTTGTGCGTATATCCAGAAATATTTCATTACTGAGGATCCTCAAATAAAAAGAATTTGTATCGAATCCAGTATATACTTAGCTTCACCTTTCTTGTCTTCAAACTTTGGCTCGTAAACACAAAAGTACTGTACGCCTTTTAAAAGGGGAAATTCGCAATTATTGGAACAATTCGTTACGGAGCAAGAACAGGTTCTTTCTTTGATCTTACTAAGAGCTTCTTTGACTTTACAGAGAGAGGGTATATAGATATAGGGGGAAAATGGGGTATTTGGATATTATTTGCATCACCGATTTGGCCAGTAATGAATGATTGGTTTTGACACCATGTAAATGGACTTCATAAATGCTCAAGATATACCAAAACTAATTAATTCATTTCTATAATGTGAATTTGGTAAGAGTTGATCAACTGAATATTCCACTTAGTTAGAATCCTGCCTAGGGAAGTAACTGCGTTTTAGATGTATACATAGGTGGTAAGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGGGATTTTGTTTACTTAGTTTGAAAATCAGTTATCTACTCCATCCGACTAGTTCCGGGTTCGAGTCCCGGGCAACTTATATTTATGGATGTTGATATTGGTTGACATGGGTATATAAGTCATCTGTTACTCTTGAATAACAAGCCCTTACTGAATTTTCTATTTCTAGAGAATGAATGTGCTTGGGAGGCCCTGATGATTAATGATGAAATAAACCAAGCAAGATTTGACCATGACTGCAATTTGAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCCTTTCTGTAACTGGATAACCTGCACTGAAAACCAACCGTCTTTACATTGGATGGTTTGGTGTTTTAATGATCCCTACCTTATTGACCGCAACTTCCGTATTCATTATTGCCTTCATTGCTGCTCGGAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTCTACTTTACGGAAACAATATTCTTTCTGGTGCCATTATCCCTACTTCTGCAGCTATCGGGTTGCACTTTGACCCAATTTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTGACTTGGTGTAGCATGTTACATGGGTGGAGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTGACGGAATCTCTGGTACTTTCAACTGA

mRNA sequence

TGTGCAAATACTTCAGTGGTAGGGAGTCAGATGCTATCAAATTCATTGATAATAGATAATGCTACCAACCAAGAACACCAGTTCCTATTATTACTTTGCTTGGATCATTGGCTAATGCGCAATTTTCTATCGGGTTGCACTTTGACCCAATTTGGGAAGCTGCTTCCGTTGATGAATGCATGTTACATGGGTGGAGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTGACGGAATCTCTGGTACTTTCAACTGA

Coding sequence (CDS)

TGTGCAAATACTTCAGTGGTAGGGAGTCAGATGCTATCAAATTCATTGATAATAGATAATGCTACCAACCAAGAACACCAGTTCCTATTATTACTTTGCTTGGATCATTGGCTAATGCGCAATTTTCTATCGGGTTGCACTTTGACCCAATTTGGGAAGCTGCTTCCGTTGATGAATGCATGTTACATGGGTGGAGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTGACGGAATCTCTGGTACTTTCAACTGA

Protein sequence

CANTSVVGSQMLSNSLIIDNATNQEHQFLLLLCLDHWLMRNFLSGCTLTQFGKLLPLMNACYMGGEWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPDGISGTFN

Homology

[Close]

BLAST of CmaCh00G003000 vs. ExPASy Swiss-Prot
Match: Q9TL35 (Photosystem II protein D1 OS=Nephroselmis olivacea OX=31312 GN=psbA PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.1e-26
Identity = 69/113 (61.06%), Postives = 80/113 (70.80%), Query Frame = 0


Query: 8   GSQMLSNSLIIDNATNQEHQFLL--LLCLDHWLMRNFLSGC-TLTQFGKLLPLMNACYMG 67
           G+ ++S ++I  +A    H + +     +D WL   +  GC  L     LL +  ACYMG
Sbjct: 74  GNNIISGAIIPSSAAIGIHFYPIWEAASIDEWL---YNGGCYELIVLHFLLGV--ACYMG 133

Query: 68  GEWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPDGISGTFN 118
            EWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMP GISGTFN
Sbjct: 134 REWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFN 181

[Close]

BLAST of CmaCh00G003000 vs. ExPASy Swiss-Prot
Match: P32036 (Photosystem II protein D1 OS=Cuscuta reflexa OX=4129 GN=psbA PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.0e-25
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 60  ACYMGGEWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPDGISGTFN 118
           ACYMG EWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMP GISGTFN
Sbjct: 124 ACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFN 181

[Close]

BLAST of CmaCh00G003000 vs. ExPASy Swiss-Prot
Match: A9L976 (Photosystem II protein D1 OS=Lemna minor OX=4472 GN=psbA PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.0e-25
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 60  ACYMGGEWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPDGISGTFN 118
           ACYMG EWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMP GISGTFN
Sbjct: 124 ACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFN 181

[Close]

BLAST of CmaCh00G003000 vs. ExPASy Swiss-Prot
Match: P04998 (Photosystem II protein D1 OS=Medicago sativa OX=3879 GN=psbA PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.0e-25
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 60  ACYMGGEWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPDGISGTFN 118
           ACYMG EWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMP GISGTFN
Sbjct: 124 ACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFN 181

[Close]

BLAST of CmaCh00G003000 vs. ExPASy Swiss-Prot
Match: Q9MUW0 (Photosystem II protein D1 OS=Mesostigma viride OX=41882 GN=psbA PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.0e-25
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 60  ACYMGGEWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPDGISGTFN 118
           ACYMG EWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMP GISGTFN
Sbjct: 124 ACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFN 181

[Close]

BLAST of CmaCh00G003000 vs. ExPASy TrEMBL
Match: A0A438D9U7 (G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Vitis vinifera OX=29760 GN=SD25_4 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 7.4e-27
Identity = 62/71 (87.32%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 46  CTLTQFGKLLPLMNACYMGGEWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFS 105
           CT TQ+GK  PLMNACYMG EWELSFRLGMRPWIAVAYSAPVAAA AVFLIYPIGQGSFS
Sbjct: 55  CTFTQYGKQHPLMNACYMGREWELSFRLGMRPWIAVAYSAPVAAAAAVFLIYPIGQGSFS 114

Query: 106 DGMPDGISGTF 117
           DGMP GIS  F
Sbjct: 115 DGMPLGISAPF 125

[Close]

BLAST of CmaCh00G003000 vs. ExPASy TrEMBL
Match: A0A1Y3BX41 (32 kDa thylakoid membrane protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr00c0572g0575941 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.1e-25
Identity = 60/62 (96.77%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 56  PLMNACYMGGEWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPDGISGT 115
           PLMNACYMG EWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMP GISGT
Sbjct: 101 PLMNACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGT 160

Query: 116 FN 118
           FN
Sbjct: 161 FN 162

[Close]

BLAST of CmaCh00G003000 vs. ExPASy TrEMBL
Match: A0A482IAZ8 (Photosystem II protein D1 (Fragment) OS=Selaginella bodinieri OX=1353957 GN=psbA PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.0e-23
Identity = 58/62 (93.55%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 56  PLMNACYMGGEWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPDGISGT 115
           PL  ACYMG EWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMP GISGT
Sbjct: 44  PLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGT 103

Query: 116 FN 118
           FN
Sbjct: 104 FN 105

[Close]

BLAST of CmaCh00G003000 vs. ExPASy TrEMBL
Match: A0A4Y7LEY7 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_046297 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.0e-23
Identity = 62/76 (81.58%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 41  NFLSGC---TLTQFGKLLPLMNACYMGGEWELSFRLGMRPWIAVAYSAPVAAATAVFLIY 100
           N +SG    T T+ GK L LMNACYMG EWELSFRLGMRPWIAVAYSA VAAATAVFLIY
Sbjct: 76  NIISGAMIPTFTRSGKWLLLMNACYMGREWELSFRLGMRPWIAVAYSALVAAATAVFLIY 135

Query: 101 PIGQGSFSDGMPDGIS 114
           PIGQGSFSDGMP GIS
Sbjct: 136 PIGQGSFSDGMPLGIS 151

[Close]

BLAST of CmaCh00G003000 vs. ExPASy TrEMBL
Match: A0A482IC61 (Photosystem II protein D1 (Fragment) OS=Selaginella bodinieri OX=1353957 GN=psbA PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.0e-23
Identity = 58/62 (93.55%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 56  PLMNACYMGGEWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPDGISGT 115
           PL  ACYMG EWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMP GISGT
Sbjct: 44  PLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGT 103

Query: 116 FN 118
           FN
Sbjct: 104 FN 105

[Close]

BLAST of CmaCh00G003000 vs. NCBI nr
Match: RVW32235.1 (G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Vitis vinifera])

HSP 1 Score: 129.8 bits (325), Expect = 1.5e-26
Identity = 62/71 (87.32%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 46  CTLTQFGKLLPLMNACYMGGEWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFS 105
           CT TQ+GK  PLMNACYMG EWELSFRLGMRPWIAVAYSAPVAAA AVFLIYPIGQGSFS
Sbjct: 55  CTFTQYGKQHPLMNACYMGREWELSFRLGMRPWIAVAYSAPVAAAAAVFLIYPIGQGSFS 114

Query: 106 DGMPDGISGTF 117
           DGMP GIS  F
Sbjct: 115 DGMPLGISAPF 125

[Close]

BLAST of CmaCh00G003000 vs. NCBI nr
Match: OTF84353.1 (putative photosynthetic reaction centre, L/M [Helianthus annuus])

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-25
Identity = 60/62 (96.77%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 56  PLMNACYMGGEWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPDGISGT 115
           PLMNACYMG EWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMP GISGT
Sbjct: 101 PLMNACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGT 160

Query: 116 FN 118
           FN
Sbjct: 161 FN 162

[Close]

BLAST of CmaCh00G003000 vs. NCBI nr
Match: QYC37456.1 (photosystem II protein D1 [Paspalum setaceum])

HSP 1 Score: 121.3 bits (303), Expect = 5.5e-24
Identity = 72/127 (56.69%), Postives = 79/127 (62.20%), Query Frame = 0


Query: 10  QMLSNSLIIDNATNQEHQFLLLLCLDHWLMRNFLSGCTLTQFGKL--------------- 69
           +++S SL+++   +    FLLL            S CT TQFGKL               
Sbjct: 65  ELVSGSLLMETILSLVPLFLLLR----------RSDCTFTQFGKLHLFDEWLYNGGPYEL 124

Query: 70  ----LPLMNACYMGGEWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPD 118
                 L  ACYMG EWELSFRLGM PWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMP 
Sbjct: 125 IVLHFLLSVACYMGREWELSFRLGMCPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPL 181

[Close]

BLAST of CmaCh00G003000 vs. NCBI nr
Match: QBP05284.1 (photosystem II protein D1, partial [Selaginella bodinieri])

HSP 1 Score: 119.4 bits (298), Expect = 2.1e-23
Identity = 58/62 (93.55%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 56  PLMNACYMGGEWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPDGISGT 115
           PL  ACYMG EWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMP GISGT
Sbjct: 44  PLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGT 103

Query: 116 FN 118
           FN
Sbjct: 104 FN 105

[Close]

BLAST of CmaCh00G003000 vs. NCBI nr
Match: RZC83507.1 (hypothetical protein C5167_046297 [Papaver somniferum])

HSP 1 Score: 119.4 bits (298), Expect = 2.1e-23
Identity = 62/76 (81.58%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 41  NFLSGC---TLTQFGKLLPLMNACYMGGEWELSFRLGMRPWIAVAYSAPVAAATAVFLIY 100
           N +SG    T T+ GK L LMNACYMG EWELSFRLGMRPWIAVAYSA VAAATAVFLIY
Sbjct: 76  NIISGAMIPTFTRSGKWLLLMNACYMGREWELSFRLGMRPWIAVAYSALVAAATAVFLIY 135

Query: 101 PIGQGSFSDGMPDGIS 114
           PIGQGSFSDGMP GIS
Sbjct: 136 PIGQGSFSDGMPLGIS 151

[Close]

BLAST of CmaCh00G003000 vs. TAIR 10
Match: ATCG00020.1 (photosystem II reaction center protein A )

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-26
Identity = 67/112 (59.82%), Postives = 78/112 (69.64%), Query Frame = 0


Query: 8   GSQMLSNSLIIDNATNQEHQFLL--LLCLDHWLMRNFLSGCTLTQFGKLLPLMNACYMGG 67
           G+ ++S ++I  +A    H + +     +D WL         +  F  LL +  ACYMG 
Sbjct: 74  GNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHF--LLGV--ACYMGR 133

Query: 68  EWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPDGISGTFN 118
           EWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMP GISGTFN
Sbjct: 134 EWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFN 181

[Close]

BLAST of CmaCh00G003000 vs. TAIR 10
Match: ATCG00270.1 (photosystem II reaction center protein D )

HSP 1 Score: 43.9 bits (102), Expect = 1.0e-04
Identity = 20/55 (36.36%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 62  YMGGEWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPDGISGTF 117
           +M  ++EL+  + +RP+ A+A+S P+A   +VFLIYP+GQ  +      G++  F
Sbjct: 126 FMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180

The following BLAST results are available for this feature:

BLAST of CmaCh00G003000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9TL35	6.1e-26	61.06	Photosystem II protein D1 OS=Nephroselmis olivacea OX=31312 GN=psbA PE=3 SV=1	[more]
P32036	1.0e-25	96.55	Photosystem II protein D1 OS=Cuscuta reflexa OX=4129 GN=psbA PE=3 SV=1	[more]
A9L976	1.0e-25	96.55	Photosystem II protein D1 OS=Lemna minor OX=4472 GN=psbA PE=3 SV=1	[more]
P04998	1.0e-25	96.55	Photosystem II protein D1 OS=Medicago sativa OX=3879 GN=psbA PE=3 SV=1	[more]
Q9MUW0	1.0e-25	96.55	Photosystem II protein D1 OS=Mesostigma viride OX=41882 GN=psbA PE=3 SV=1	[more]

BLAST of CmaCh00G003000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438D9U7	7.4e-27	87.32	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Vitis vin...	[more]
A0A1Y3BX41	1.1e-25	96.77	32 kDa thylakoid membrane protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr00c...	[more]
A0A482IAZ8	1.0e-23	93.55	Photosystem II protein D1 (Fragment) OS=Selaginella bodinieri OX=1353957 GN=psbA...	[more]
A0A4Y7LEY7	1.0e-23	81.58	Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_046297 PE=3 SV=1	[more]
A0A482IC61	1.0e-23	93.55	Photosystem II protein D1 (Fragment) OS=Selaginella bodinieri OX=1353957 GN=psbA...	[more]

BLAST of CmaCh00G003000 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW32235.1	1.5e-26	87.32	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Vitis vinif...	[more]
OTF84353.1	2.2e-25	96.77	putative photosynthetic reaction centre, L/M [Helianthus annuus]	[more]
QYC37456.1	5.5e-24	56.69	photosystem II protein D1 [Paspalum setaceum]	[more]
QBP05284.1	2.1e-23	93.55	photosystem II protein D1, partial [Selaginella bodinieri]	[more]
RZC83507.1	2.1e-23	81.58	hypothetical protein C5167_046297 [Papaver somniferum]	[more]

BLAST of CmaCh00G003000 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00020.1	2.1e-26	59.82	photosystem II reaction center protein A	[more]
ATCG00270.1	1.0e-04	36.36	photosystem II reaction center protein D	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000484	Photosynthetic reaction centre, L/M	PFAM	PF00124	Photo_RC	coord: 60..117 e-value: 5.6E-21 score: 74.9
IPR000484	Photosynthetic reaction centre, L/M	PANTHER	PTHR33149	PHOTOSYSTEM II PROTEIN D1	coord: 54..117
IPR036854	Photosystem II protein D1/D2 superfamily	GENE3D	1.20.85.10		coord: 48..117 e-value: 8.8E-18 score: 66.5
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 60..117
None	No IPR available	PANTHER	PTHR33149:SF30	PHOTOSYNTHETIC REACTION CENTRE, L/M-RELATED	coord: 54..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G003000.1	CmaCh00G003000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0019684	photosynthesis, light reaction
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity