CmaCh00G002980 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh00G002980
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptiontranscription factor bHLH13-like
LocationCma_Chr00: 22651495 .. 22651797 (-)
RNA-Seq ExpressionCmaCh00G002980
SyntenyCmaCh00G002980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATATGAAAGGGAGCAATCCGGCATCACCTCAAGTGAAGCAACCCCTTCGGAGACGAACCCAGAAATTGAAAACAAAGATCAATTCCTCGATGTTGACATCGACGTCGAAGCAGGTAATGACGAAGTCATTGTTAAGGTTAGCTGCCCATTAGAGTCACACCCTGCATCAAGAGTTATCAAGGCAATGAAAAATGCACAGATCAGTGTTGTTGATTCAAAACTCTCTGTTGAAGTAAACGATACAGTTTTGCACACGTTTACGATCAAATCCCCCGGATCGGAGCAGTTGACCTGTTGA

mRNA sequence

ATGGAATATGAAAGGGAGCAATCCGGCATCACCTCAAGTGAAGCAACCCCTTCGGAGACGAACCCAGAAATTGAAAACAAAGATCAATTCCTCGATGTTGACATCGACGTCGAAGCAGGTAATGACGAAGTCATTGTTAAGGTTAGCTGCCCATTAGAGTCACACCCTGCATCAAGAGTTATCAAGGCAATGAAAAATGCACAGATCAGTGTTGTTGATTCAAAACTCTCTGTTGAAGTAAACGATACAGTTTTGCACACGTTTACGATCAAATCCCCCGGATCGGAGCAGTTGACCTGTTGA

Coding sequence (CDS)

ATGGAATATGAAAGGGAGCAATCCGGCATCACCTCAAGTGAAGCAACCCCTTCGGAGACGAACCCAGAAATTGAAAACAAAGATCAATTCCTCGATGTTGACATCGACGTCGAAGCAGGTAATGACGAAGTCATTGTTAAGGTTAGCTGCCCATTAGAGTCACACCCTGCATCAAGAGTTATCAAGGCAATGAAAAATGCACAGATCAGTGTTGTTGATTCAAAACTCTCTGTTGAAGTAAACGATACAGTTTTGCACACGTTTACGATCAAATCCCCCGGATCGGAGCAGTTGACCTGTTGA

Protein sequence

MEYEREQSGITSSEATPSETNPEIENKDQFLDVDIDVEAGNDEVIVKVSCPLESHPASRVIKAMKNAQISVVDSKLSVEVNDTVLHTFTIKSPGSEQLTC
Homology
BLAST of CmaCh00G002980 vs. ExPASy Swiss-Prot
Match: A0A3Q7ELQ2 (Transcription factor MTB1 OS=Solanum lycopersicum OX=4081 GN=MTB1 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-18
Identity = 59/100 (59.00%), Postives = 70/100 (70.00%), Query Frame = 0

Query: 1   MEYERE-QSGITSSEATPSETNPEIENKDQFLDVDIDVEAGNDEVIVKVSCPLESHPASR 60
           ME ERE + G TS +A  SE +P  E   Q    DI++EA NDEVIV+VSC LE+HP SR
Sbjct: 486 MESERELRLGSTSRDAITSEDSPSSE--IQIRGPDINIEAANDEVIVRVSCSLETHPLSR 545

Query: 61  VIKAMKNAQISVVDSKLSVEVNDTVLHTFTIKSPGSEQLT 100
           +I+  K AQI+VV+SKLS   N TV HTF IKS GSEQLT
Sbjct: 546 IIQIFKEAQINVVESKLSAG-NGTVYHTFVIKSSGSEQLT 582

BLAST of CmaCh00G002980 vs. ExPASy Swiss-Prot
Match: A0A3Q7HES4 (Transcription factor MTB2 OS=Solanum lycopersicum OX=4081 GN=MTB2 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-14
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 0

Query: 2   EYEREQSGITSSEATPSETNPEIENKDQFLDVDIDVEAGNDEVIVKVSCPLESHPASRVI 61
           EY+ E+ G TS +A                  DI++EA +DEVIV+  CPL +HP ++V+
Sbjct: 485 EYKLEKRGSTSVDA-----------------ADINIEAASDEVIVRARCPLGTHPVAKVV 544

Query: 62  KAMKNAQISVVDSKLSVEVNDTVLHTFTIKSPGSEQLT 100
           +A K  Q+SVV+SKL+V  NDTV HTF +KS G EQLT
Sbjct: 545 EAFKETQVSVVESKLAVG-NDTVYHTFVVKSSGPEQLT 564

BLAST of CmaCh00G002980 vs. ExPASy Swiss-Prot
Match: Q9ZPY8 (Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana OX=3702 GN=AIB PE=2 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 7.3e-12
Identity = 35/67 (52.24%), Postives = 55/67 (82.09%), Query Frame = 0

Query: 34  DIDVEAGNDEVIVKVSCPLESHPASRVIKAMKNAQISVVDSKLSVEVNDTVLHTFTIKS- 93
           ++D++A N+EV+V+V  PL+SHPASR+I+AM+N+ +S++++KLS+   DT+ HTF IKS 
Sbjct: 471 EVDIQAMNEEVVVRVISPLDSHPASRIIQAMRNSNVSLMEAKLSL-AEDTMFHTFVIKSN 530

Query: 94  PGSEQLT 100
            GS+ LT
Sbjct: 531 NGSDPLT 536

BLAST of CmaCh00G002980 vs. ExPASy Swiss-Prot
Match: Q9LNJ5 (Transcription factor bHLH13 OS=Arabidopsis thaliana OX=3702 GN=BHLH13 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.5e-12
Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = 0

Query: 1   MEYEREQSGITSSEATPSETNPEIENKDQFLDVDIDVEAGNDEVIVKVSCPLESHPASRV 60
           ME ERE+ G +S        NP I      LD DI+V+   ++V V+++CPLESHPASR+
Sbjct: 485 MEAERERLGYSS--------NPPIS-----LDSDINVQTSGEDVTVRINCPLESHPASRI 544

Query: 61  IKAMKNAQISVVDSKLSVEVNDTVLHTFTIKSPGSEQLT 100
             A + +++ V++S L V   DTVLHTF +K   SE+LT
Sbjct: 545 FHAFEESKVEVINSNLEVS-QDTVLHTFVVK---SEELT 566

BLAST of CmaCh00G002980 vs. ExPASy Swiss-Prot
Match: A0A3Q7H216 (Transcription factor MTB3 OS=Solanum lycopersicum OX=4081 GN=MTB3 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.1e-07
Identity = 24/70 (34.29%), Postives = 44/70 (62.86%), Query Frame = 0

Query: 25  ENKDQFLDVDIDVEAGNDEVIVKVSCPLESHPASRVIKAMKNAQISVVDSKLSVEVNDTV 84
           + + Q + ++ID     D+ +V+V CPL +HP SRV+K  +  Q+   +S +S+  N  +
Sbjct: 392 DKQKQQVILEIDFHQRQDDAVVRVGCPLNAHPVSRVLKTFQEHQVVAQESNVSLTENGEL 451

Query: 85  LHTFTIKSPG 95
           +H F+I++PG
Sbjct: 452 VHMFSIRAPG 461

BLAST of CmaCh00G002980 vs. TAIR 10
Match: AT2G46510.1 (ABA-inducible BHLH-type transcription factor )

HSP 1 Score: 71.2 bits (173), Expect = 5.2e-13
Identity = 35/67 (52.24%), Postives = 55/67 (82.09%), Query Frame = 0

Query: 34  DIDVEAGNDEVIVKVSCPLESHPASRVIKAMKNAQISVVDSKLSVEVNDTVLHTFTIKS- 93
           ++D++A N+EV+V+V  PL+SHPASR+I+AM+N+ +S++++KLS+   DT+ HTF IKS 
Sbjct: 471 EVDIQAMNEEVVVRVISPLDSHPASRIIQAMRNSNVSLMEAKLSL-AEDTMFHTFVIKSN 530

Query: 94  PGSEQLT 100
            GS+ LT
Sbjct: 531 NGSDPLT 536

BLAST of CmaCh00G002980 vs. TAIR 10
Match: AT1G01260.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 6.7e-13
Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = 0

Query: 1   MEYEREQSGITSSEATPSETNPEIENKDQFLDVDIDVEAGNDEVIVKVSCPLESHPASRV 60
           ME ERE+ G +S        NP I      LD DI+V+   ++V V+++CPLESHPASR+
Sbjct: 485 MEAERERLGYSS--------NPPIS-----LDSDINVQTSGEDVTVRINCPLESHPASRI 544

Query: 61  IKAMKNAQISVVDSKLSVEVNDTVLHTFTIKSPGSEQLT 100
             A + +++ V++S L V   DTVLHTF +K   SE+LT
Sbjct: 545 FHAFEESKVEVINSNLEVS-QDTVLHTFVVK---SEELT 566

BLAST of CmaCh00G002980 vs. TAIR 10
Match: AT1G01260.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 6.7e-13
Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = 0

Query: 1   MEYEREQSGITSSEATPSETNPEIENKDQFLDVDIDVEAGNDEVIVKVSCPLESHPASRV 60
           ME ERE+ G +S        NP I      LD DI+V+   ++V V+++CPLESHPASR+
Sbjct: 485 MEAERERLGYSS--------NPPIS-----LDSDINVQTSGEDVTVRINCPLESHPASRI 544

Query: 61  IKAMKNAQISVVDSKLSVEVNDTVLHTFTIKSPGSEQLT 100
             A + +++ V++S L V   DTVLHTF +K   SE+LT
Sbjct: 545 FHAFEESKVEVINSNLEVS-QDTVLHTFVVK---SEELT 566

BLAST of CmaCh00G002980 vs. TAIR 10
Match: AT1G01260.3 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 6.7e-13
Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = 0

Query: 1   MEYEREQSGITSSEATPSETNPEIENKDQFLDVDIDVEAGNDEVIVKVSCPLESHPASRV 60
           ME ERE+ G +S        NP I      LD DI+V+   ++V V+++CPLESHPASR+
Sbjct: 485 MEAERERLGYSS--------NPPIS-----LDSDINVQTSGEDVTVRINCPLESHPASRI 544

Query: 61  IKAMKNAQISVVDSKLSVEVNDTVLHTFTIKSPGSEQLT 100
             A + +++ V++S L V   DTVLHTF +K   SE+LT
Sbjct: 545 FHAFEESKVEVINSNLEVS-QDTVLHTFVVK---SEELT 566

BLAST of CmaCh00G002980 vs. TAIR 10
Match: AT4G16430.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 52.8 bits (125), Expect = 1.9e-07
Identity = 28/86 (32.56%), Postives = 53/86 (61.63%), Query Frame = 0

Query: 19  ETNPEI---ENKDQFLDVDIDVEAGNDEVIVKVSCPLESHPASRVIKAMKNAQISVVDSK 78
           ET  +I      +Q    ++D +  +D+ +V++SCPLE+HP S+VI+ ++  ++   DS 
Sbjct: 373 ETEKQIMKRRESNQITPAEVDYQQRHDDAVVRLSCPLETHPVSKVIQTLRENEVMPHDSN 432

Query: 79  LSVEVNDTVLHTFTIKSPG---SEQL 99
           +++   + V+HTFT++  G   +EQL
Sbjct: 433 VAI-TEEGVVHTFTLRPQGGCTAEQL 457

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A3Q7ELQ21.8e-1859.00Transcription factor MTB1 OS=Solanum lycopersicum OX=4081 GN=MTB1 PE=1 SV=1[more]
A0A3Q7HES41.2e-1446.94Transcription factor MTB2 OS=Solanum lycopersicum OX=4081 GN=MTB2 PE=2 SV=1[more]
Q9ZPY87.3e-1252.24Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana OX=3702 GN=... [more]
Q9LNJ59.5e-1244.44Transcription factor bHLH13 OS=Arabidopsis thaliana OX=3702 GN=BHLH13 PE=1 SV=1[more]
A0A3Q7H2164.1e-0734.29Transcription factor MTB3 OS=Solanum lycopersicum OX=4081 GN=MTB3 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT2G46510.15.2e-1352.24ABA-inducible BHLH-type transcription factor [more]
AT1G01260.16.7e-1344.44basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
AT1G01260.26.7e-1344.44basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
AT1G01260.36.7e-1344.44basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
AT4G16430.11.9e-0732.56basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availablePANTHERPTHR11514:SF107TRANSCRIPTION FACTOR MTB1coord: 1..99
IPR045084Transcription factor AIB/MYC-likePANTHERPTHR11514MYCcoord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G002980.1CmaCh00G002980.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0046983 protein dimerization activity