Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAGAACTTTCAAAGCTTCTGACTTTAGAATAAAATGATGAAGTCAATAACATAAATATGAACTACTTCAAGTTACAAAAATTTTCCTTCTGGCAAAGCTTATGGATTTCTCACATATCTTTCTCCTCTTCTTCCTCTTCATCCTCCCCACTTTATCCACAGCTCAAAGTTGCTCTATTTCCAAGTGTATGAAGGACAACTTCGGCATCCGATTCCCGTTCCGAATTCCTGAGCTGCAACCTGCAAGATGTGGCTATCCTGGTTTCAACTTAGCCTGCAACGACGTGGGTGTGTCGACTCTAAATCTATCGTCTTCAGAACAATTTTTGGTAAGAAATATTGATTATGTTGCTCAACAGATACAGCTCTATGATCCAGATGTTTGCCTTCCTAAAAGGCTTCTTCTTCAAGGCTTCAACTTCGATCTCTCAAATTCTCCATTTCTGCTCCCTTTTAGTAAGAATTTCACCTTCCTAAGCTGTCAACCTCAATTTGCAACATCCCGATTTCCTGTCCTTAGCTGCCTTAGCAACTCCACCAGCTCGGTTGTGGCTACTTCTTCCATGAGTTATGTCAGGTCAATGTCAAAGTCAAACTCTTGCAGGATCATGGCTAATTTAACTGTCCCAGTTGCGTACCCAGATGAGGCCAATCAGTTTCTAACCGACCACTATGGTGATCTCCTGCTAACTTGGAATAGCCCTGCTTGCAGTATCTGCGAAACAGAAGGCAGGCTTTGTGGGTTCAAAAGCAACAGCGGCCTCGGCATTGCCTGTTTCAATAAGTACTCAACAGGTCAAAATTTTACCCTTTGTTGCTATTTCCTAAGTTCATGTTCTTCTTTAAACTCTTCATCTTCTGAAATGGATGAGAATGCATTGTTCGAGGAAAATGTAACGACCTAGTTTTCTACTTATCCTAAAGTCGTTACGGTATACCTATCATTTTAGGCTGAAATAATCATTTAAAATTTTATCATAAAAACATTGCTACGAACTTACATGTTTATTGAAAGGTCCTTAAAACACTTTAACATGAGTCAAAAGAACATAAGTAAAATAAAACATAAATGCCCTATACTAACTTATAGTCGACAAATTAAATGCAACCTAGCCCTATACTAACTTATAGTCTACAAAAATAAAATGCAAACTACCCTATGCATGTGACATGGTTTCCCGAGTTGCGATGCCACTGTCAGCCGTACATGGGAGTCTTGCTTTTACTTGAAAAATAAGAGTAACACATAACTTGAGTATTTTAAGAAATACTCATTAAGTGACCTTACTATTGAGGTAGATGCAAGCACACACAATCACGTGTGAGCCGTGTATAGAATAGTAAACATACATCTCATTACCCGCTTAGGATAGTCGGCTAAGGGAATACAGATTTAAATGATAGGTCAAATTCATGATTGTGTGTGCTTGCATCTAACCTCAATAGTGGGGTCACTTTACTAAGTATTTCTTAAAATACTTAAGCCATGTGTTACTCTTATTTTCCAAGTAAAGGCAAGACTCCCATGTACGGCTGACAATGACATCGCAACTCAAGAGACCATGTCACATGCATAGGGTAGTTTGTATTTTGTTTTTGTAGACGATAGGTTAGTATAGGGGCTAGGCTATATTTAATTTCATAGACTATATGTTATGCATACCCTAACGACTTTAGGTTAAGTAGAAATCTAGGGTAGTTACCTAAAAATTCAAATAAAAATAAATCATTGTTTTGTTCCGATTATGGTCAACTTTAACCCATATTGCAAAAATAAAGATACAGGCTGCTATATGAATCTTAGACTGGCTCTTGGTTGACTAAGACATAGATAAAGCTTATATTATAGGCAAGTTGAGATTAAAGTAATAACAGAAGAATATCATGGATGATGAAGGAATGACAAAGACACTTGTTCTCAGCTGCACGTCTCTTAATGATATCATTCATGATATAGTTTGCAAAAATATCAAACTTTAAATGATAAAATACCTTAAATTTCAGGGGAGAATAATGGCCTCAGAATATTGCGGATCATCTGTGTGGTGATTATTCTACCGAGTTTGATGTGTGTCTTTGGATTTGGCTGCTTCATCTGCTTCGCAAGGTGGGGCTATGGCATTGCAGACAGCAGAAGAAACCAAGCTCAGCATCAGCAGCAGGTCAATCCAGCTTTAGAGACAGAGCCACCGATCCGTTTGAGTGGTCTGGATGAATCAACCATTGATTCATATCAGAAGGTAATCCTTGGAGAAAGCCGGCGGCTGCCTGGCCCCAATGGCACCACCTGCCCCATATGCCTCGGAGAGTACTTAACCAAAGACACTGTCAGATGCATTCCTGAGTGTAAGCATTGCTTCCATGTGGATTGTATTGATCAATGGCTTCGTGTCAACAGCAGCTGCCCTCTTTGTCGAAACTCTCCCTCTCCCTCCCCTTCTCACTAACTTCAATTCTTCTACGTAACAAGAACACAACAATGCAAAGTCAGTGTGTACAGAGATTCAAGTAATTTAAGAAAACCCCACTTTTTTGTGTGTCAATAACCAAAAGAAACTCATAAAATCGGCATGGTAGCAG
mRNA sequence
ATAGAACTTTCAAAGCTTCTGACTTTAGAATAAAATGATGAAGTCAATAACATAAATATGAACTACTTCAAGTTACAAAAATTTTCCTTCTGGCAAAGCTTATGGATTTCTCACATATCTTTCTCCTCTTCTTCCTCTTCATCCTCCCCACTTTATCCACAGCTCAAAGTTGCTCTATTTCCAAGTGTATGAAGGACAACTTCGGCATCCGATTCCCGTTCCGAATTCCTGAGCTGCAACCTGCAAGATGTGGCTATCCTGGTTTCAACTTAGCCTGCAACGACGTGGGTGTGTCGACTCTAAATCTATCGTCTTCAGAACAATTTTTGGTAAGAAATATTGATTATGTTGCTCAACAGATACAGCTCTATGATCCAGATGTTTGCCTTCCTAAAAGGCTTCTTCTTCAAGGCTTCAACTTCGATCTCTCAAATTCTCCATTTCTGCTCCCTTTTAGTAAGAATTTCACCTTCCTAAGCTGTCAACCTCAATTTGCAACATCCCGATTTCCTGTCCTTAGCTGCCTTAGCAACTCCACCAGCTCGGTTGTGGCTACTTCTTCCATGAGTTATGTCAGGTCAATGTCAAAGTCAAACTCTTGCAGGATCATGGCTAATTTAACTGTCCCAGTTGCGTACCCAGATGAGGCCAATCAGTTTCTAACCGACCACTATGGTGATCTCCTGCTAACTTGGAATAGCCCTGCTTGCAGTATCTGCGAAACAGAAGGCAGGCTTTGTGGGTTCAAAAGCAACAGCGGCCTCGGCATTGCCTGTTTCAATAAGTACTCAACAGGGGAGAATAATGGCCTCAGAATATTGCGGATCATCTGTGTGGTGATTATTCTACCGAGTTTGATGTGTGTCTTTGGATTTGGCTGCTTCATCTGCTTCGCAAGGTGGGGCTATGGCATTGCAGACAGCAGAAGAAACCAAGCTCAGCATCAGCAGCAGGTCAATCCAGCTTTAGAGACAGAGCCACCGATCCGTTTGAGTGGTCTGGATGAATCAACCATTGATTCATATCAGAAGGTAATCCTTGGAGAAAGCCGGCGGCTGCCTGGCCCCAATGGCACCACCTGCCCCATATGCCTCGGAGAGTACTTAACCAAAGACACTGTCAGATGCATTCCTGAGTGTAAGCATTGCTTCCATGTGGATTGTATTGATCAATGGCTTCGTGTCAACAGCAGCTGCCCTCTTTGTCGAAACTCTCCCTCTCCCTCCCCTTCTCACTAACTTCAATTCTTCTACGTAACAAGAACACAACAATGCAAAGTCAGTGTGTACAGAGATTCAAGTAATTTAAGAAAACCCCACTTTTTTGTGTGTCAATAACCAAAAGAAACTCATAAAATCGGCATGGTAGCAG
Coding sequence (CDS)
ATGGATTTCTCACATATCTTTCTCCTCTTCTTCCTCTTCATCCTCCCCACTTTATCCACAGCTCAAAGTTGCTCTATTTCCAAGTGTATGAAGGACAACTTCGGCATCCGATTCCCGTTCCGAATTCCTGAGCTGCAACCTGCAAGATGTGGCTATCCTGGTTTCAACTTAGCCTGCAACGACGTGGGTGTGTCGACTCTAAATCTATCGTCTTCAGAACAATTTTTGGTAAGAAATATTGATTATGTTGCTCAACAGATACAGCTCTATGATCCAGATGTTTGCCTTCCTAAAAGGCTTCTTCTTCAAGGCTTCAACTTCGATCTCTCAAATTCTCCATTTCTGCTCCCTTTTAGTAAGAATTTCACCTTCCTAAGCTGTCAACCTCAATTTGCAACATCCCGATTTCCTGTCCTTAGCTGCCTTAGCAACTCCACCAGCTCGGTTGTGGCTACTTCTTCCATGAGTTATGTCAGGTCAATGTCAAAGTCAAACTCTTGCAGGATCATGGCTAATTTAACTGTCCCAGTTGCGTACCCAGATGAGGCCAATCAGTTTCTAACCGACCACTATGGTGATCTCCTGCTAACTTGGAATAGCCCTGCTTGCAGTATCTGCGAAACAGAAGGCAGGCTTTGTGGGTTCAAAAGCAACAGCGGCCTCGGCATTGCCTGTTTCAATAAGTACTCAACAGGGGAGAATAATGGCCTCAGAATATTGCGGATCATCTGTGTGGTGATTATTCTACCGAGTTTGATGTGTGTCTTTGGATTTGGCTGCTTCATCTGCTTCGCAAGGTGGGGCTATGGCATTGCAGACAGCAGAAGAAACCAAGCTCAGCATCAGCAGCAGGTCAATCCAGCTTTAGAGACAGAGCCACCGATCCGTTTGAGTGGTCTGGATGAATCAACCATTGATTCATATCAGAAGGTAATCCTTGGAGAAAGCCGGCGGCTGCCTGGCCCCAATGGCACCACCTGCCCCATATGCCTCGGAGAGTACTTAACCAAAGACACTGTCAGATGCATTCCTGAGTGTAAGCATTGCTTCCATGTGGATTGTATTGATCAATGGCTTCGTGTCAACAGCAGCTGCCCTCTTTGTCGAAACTCTCCCTCTCCCTCCCCTTCTCACTAA
Protein sequence
MDFSHIFLLFFLFILPTLSTAQSCSISKCMKDNFGIRFPFRIPELQPARCGYPGFNLACNDVGVSTLNLSSSEQFLVRNIDYVAQQIQLYDPDVCLPKRLLLQGFNFDLSNSPFLLPFSKNFTFLSCQPQFATSRFPVLSCLSNSTSSVVATSSMSYVRSMSKSNSCRIMANLTVPVAYPDEANQFLTDHYGDLLLTWNSPACSICETEGRLCGFKSNSGLGIACFNKYSTGENNGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQHQQQVNPALETEPPIRLSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKDTVRCIPECKHCFHVDCIDQWLRVNSSCPLCRNSPSPSPSH
Homology
BLAST of CmaCh00G002910 vs. ExPASy Swiss-Prot
Match:
P0CH01 (Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1)
HSP 1 Score: 303.1 bits (775), Expect = 4.3e-81
Identity = 180/383 (47.00%), Postives = 241/383 (62.92%), Query Frame = 0
Query: 1 MDFS-HIFL-LFFLFILPTLSTAQSCSISKCMKDNFGIRFPFRIPELQPARCGYPGFNLA 60
M FS +FL LFFLF L S Q CS S C +D+ +RFPF + QP CG+ GFNL
Sbjct: 1 MTFSKQLFLYLFFLFPLLHASHPQQCSSSSCGRDDVHVRFPFWLLSKQPELCGHAGFNLQ 60
Query: 61 CNDVGVSTLNLSSSEQFLVRNIDYVAQQIQLYDPDVCLPKRLLLQGFNFDLSNSPFLLPF 120
C + L L +S FLVR IDY++QQI+LYDP+ CL ++LL FD+S SPF +
Sbjct: 61 CTASPKTALKLPNSGTFLVREIDYLSQQIRLYDPENCLARKLL----TFDISRSPFSALY 120
Query: 121 SKNFTFLSCQPQFA-TSRFPVLSCLSNSTSSVVATSSMSYVRSMSKSNSCRIMANLTVPV 180
++TFLSC + A +SRF + CL NST+S +AT+S+ +SM SC+I+ L VPV
Sbjct: 121 LVSYTFLSCPNEVAKSSRFDSIPCLGNSTTSFLATTSLDLAKSMLP--SCQIVKTLDVPV 180
Query: 181 A--YPDEANQFLTD-HYGDLLLTWNSPACSICETEGRLCGFKSNSGLGIACFNKYSTGEN 240
+ + ++F TD + DL L W+SP+CS CE + CGF+SN+ L + CF ++G N
Sbjct: 181 SRRVIAKKSRFSTDVNDKDLWLKWDSPSCSDCERDFLRCGFRSNTSLQVKCFPFENSGYN 240
Query: 241 NGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQHQQQVN-PALETEP 300
++L+II + II P + +F C A G+ S R + Q+ V AL+
Sbjct: 241 TEPQVLKIILLSIIGP--LTIFA----TCIA---VGVCTSERFASLIQRNVAIAALQPNE 300
Query: 301 PIRLSGLDESTIDSYQKVILGESRRLPGPN-GTTCPICLGEYLTKDTVRCIPECKHCFHV 360
I +GLDES I+SY+K LGESRRLPG N CPICL EY +K+TVRCIPEC HCFH
Sbjct: 301 VIVTTGLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCFHS 360
Query: 361 DCIDQWLRVNSSCPLCRNSPSPS 376
+CID WL+++ SCPLCRNSPSP+
Sbjct: 361 ECIDVWLKIHGSCPLCRNSPSPA 368
BLAST of CmaCh00G002910 vs. ExPASy Swiss-Prot
Match:
Q9SKK8 (RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2)
HSP 1 Score: 282.7 bits (722), Expect = 6.0e-75
Identity = 167/386 (43.26%), Postives = 219/386 (56.74%), Query Frame = 0
Query: 9 LFFLFILPTLSTAQS--CSISKCMKDNFGIRFPFRIPELQPARCGYPGFNLACNDVGVST 68
L FLF P L+ ++ C C +++ RFPF + QP CGY GFNL C D +T
Sbjct: 12 LIFLFFFPLLNASEQKPCYSFSCSQESVVARFPFSLFSYQPESCGYSGFNLICKDDANTT 71
Query: 69 LNLSSSEQFLVRNIDYVAQQIQLYDPDVCLPKRLLLQGFNFDLSNSPFLLPFSKNFTFLS 128
L L SE FLV+ IDY Q+I+L DP+ CL +RLL NFD S SPF S+N+TFL
Sbjct: 72 LKLPKSEPFLVKEIDYETQRIRLNDPENCLARRLL----NFDPSGSPFSFLRSRNYTFLI 131
Query: 129 CQPQF-ATSRFPVLSCLSNSTSSVVATSSMSYVRSMSKSNSCRIMANLTVP-------VA 188
C + T+ F + CL N+TSS + + S +SC I L +P
Sbjct: 132 CPKEANITASFRAIDCLGNTTSSFFV---VQFENLGSMPSSCHIFKILPLPFSWFVAYTT 191
Query: 189 YPDEANQFLTDHYGDLLLTWNSPACSICE--TEGRLCGFKSNSGLGIACFNKYSTG-ENN 248
YPD N D+ L W+SP C CE T R CGFK+N+ + CF+ + G N
Sbjct: 192 YPDGQNS------RDMWLKWDSPDCRDCERRTNSR-CGFKNNTSHQVECFSSVNPGLHNT 251
Query: 249 GLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQHQQQVNPALE---TE 308
GL++L+I+C+ ++ P F G +C S R +Q QQ V L T
Sbjct: 252 GLQVLKIMCLSLVGPLTALTFCVGLVMC---------SSERVSSQIQQAVVARLSGSVTS 311
Query: 309 PP---IRLSGLDESTIDSYQKVILGESRRLP-GPNGTTCPICLGEYLTKDTVRCIPECKH 368
P + GLDESTI+SY+KV LGESRRLP G N CPICL EY TK+TVRC+PEC+H
Sbjct: 312 QPSNEVARIGLDESTIESYKKVELGESRRLPTGSNDVVCPICLSEYATKETVRCLPECEH 371
Query: 369 CFHVDCIDQWLRVNSSCPLCRNSPSP 375
CFH +CID WL+++SSCP+CR++PSP
Sbjct: 372 CFHTECIDAWLKLHSSCPVCRSNPSP 374
BLAST of CmaCh00G002910 vs. ExPASy Swiss-Prot
Match:
P0CH02 (Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana OX=3702 GN=ATL21B PE=3 SV=1)
HSP 1 Score: 244.2 bits (622), Expect = 2.4e-63
Identity = 151/375 (40.27%), Postives = 199/375 (53.07%), Query Frame = 0
Query: 3 FSHIFLLFFLFILPTLSTAQSCSIS-----KCMKDNFGIRFPFRIPELQPARCGYPGFNL 62
F FLLFF+F L S CS S +C IRFPF C +P FNL
Sbjct: 8 FLLFFLLFFIFPLRHASNPSKCSSSNSRPHRCGPLEVPIRFPF---------CDHPLFNL 67
Query: 63 ACNDVGVSTLNLSSSEQFLVRNIDYVAQQIQLYDPDVCLPKRLLLQGFNFDLSNSPFLLP 122
C ++ + L L S F V+ IDY QQI + DP+ CL KRLL F++S SPF
Sbjct: 68 LCTNLNNTVLQLPMSGTFFVQYIDYRKQQIYINDPENCLAKRLL----TFNISGSPFSPR 127
Query: 123 FSKNFTFLSCQPQFA-TSRFPVLSCLSNSTSSVVATSSMSYVRSMSKSNSCRIMANLTVP 182
F +TFL+C + S +P + CLSNSTSS ATS+ + SM SC+I+ + VP
Sbjct: 128 FDTLYTFLTCPNELVLPSWYPSIPCLSNSTSSFFATSNFALAESMLP--SCQIVKRIYVP 187
Query: 183 VAYPDEANQFLTDHYGDLLLTWNSPACSICETEGRLCGFKSNSGLGIACFNKYSTGENNG 242
P +F + LLL WNSP C CE + CGFK+ + + CF +G +
Sbjct: 188 ADSPFAETRFSSYLNQSLLLEWNSPNCRGCEIDYLRCGFKNKASPEVKCFGAKKSGHLSR 247
Query: 243 LRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQHQQQVNPALETEPPIR 302
+ +IC+ II ++ V C A + RR+ A + +
Sbjct: 248 AVVAVLICLSIIGAVILFV------TCIAIRIHN-TPRRRHWAVPAAAATVMQQPREVMA 307
Query: 303 LSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKDTVRCIPECKHCFHVDCID 362
GLD+STI+ Y+ + LGESRR PG NG CPICL EY++K+TVR IPEC HCFH CID
Sbjct: 308 TRGLDQSTIEKYKTMELGESRRPPGTNGIVCPICLSEYVSKETVRFIPECDHCFHAKCID 360
Query: 363 QWLRVNSSCPLCRNS 372
WL+++ SCPLCRNS
Sbjct: 368 VWLKIHGSCPLCRNS 360
BLAST of CmaCh00G002910 vs. ExPASy Swiss-Prot
Match:
P0CH03 (Putative RING-H2 finger protein ATL21C OS=Arabidopsis thaliana OX=3702 GN=ATL21C PE=3 SV=1)
HSP 1 Score: 221.1 bits (562), Expect = 2.1e-56
Identity = 155/380 (40.79%), Postives = 202/380 (53.16%), Query Frame = 0
Query: 3 FSHIFLLFFLFILPTLSTAQSCSIS-----KCMKDNFGIRFPFRIPELQPARCGYPGFNL 62
F +F L FL L S +CS S +C IRFPF C + FNL
Sbjct: 8 FPFVFFLLFLVSLRHASNPNNCSSSSSRPLRCGPLEVPIRFPF---------CNHARFNL 67
Query: 63 ACNDVGVSTLNLSSSEQFLVRNIDYVAQQIQLYDPDVCLPKRLLLQGFNFDLSNSPFLLP 122
C D+ + L L S FLVR+IDY Q+I + DP+ CL KRLL F++S SPF
Sbjct: 68 HCTDLNKTVLELPMSGTFLVRDIDYRRQKIYINDPN-CLAKRLL----TFNISGSPFSPH 127
Query: 123 FSKNFTFLSCQPQFA-TSRFPVLSCLSNSTSSVVATSSMSYVRSMSKSNSCRIMANLTVP 182
F +TFLSC + S +P + CLSNSTSS ATS+ S +SM SC+I+ L VP
Sbjct: 128 FDILYTFLSCPNEVVLPSWYPSIPCLSNSTSSFFATSNYSLAQSMLP--SCQIVKRLHVP 187
Query: 183 VAYPDEANQFLTD-HYGDLLLTWNSPAC-SICETEGRLCGFKSNSGLGIACFN-KYSTGE 242
P +F +D + LLL W P C + C + G NS + F+ Y + E
Sbjct: 188 ATSPFGETRFSSDLNNQSLLLEWALPDCRAKCLGATKKTGTIYNSNIFSCSFSFLYDSRE 247
Query: 243 --NNGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQHQQQVNPALET 302
NG + + V++I S + VF F I + DS A QQ +
Sbjct: 248 LFING-NLSSGVLVLVISLSAVTVFVFPTCIAIRLYDSERFDSAIAAATVMQQPREVMAR 307
Query: 303 EPPIRLSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKDTVRCIPECKHCFH 362
GLD+STI++++K+ LGESRRL G NG CPICL EY +K+TVR IPEC HCFH
Sbjct: 308 R------GLDQSTIETFKKMELGESRRLSGTNGIVCPICLSEYASKETVRFIPECDHCFH 364
Query: 363 VDCIDQWLRVNSSCPLCRNS 372
V+CID WL+++ SCPLCRNS
Sbjct: 368 VECIDVWLKIHGSCPLCRNS 364
BLAST of CmaCh00G002910 vs. ExPASy Swiss-Prot
Match:
Q9C7E9 (RING-H2 finger protein ATL20 OS=Arabidopsis thaliana OX=3702 GN=ATL20 PE=2 SV=2)
HSP 1 Score: 218.4 bits (555), Expect = 1.4e-55
Identity = 133/313 (42.49%), Postives = 180/313 (57.51%), Query Frame = 0
Query: 72 SEQFLVRNIDYVAQQIQLYDPDVCLPKRLLLQGFNFDLSNSPFLLPFSKNFTFLSCQPQF 131
S FLV I+Y QQI + DP+ C+ KRLL F+ S SPF FS +TFL+C +
Sbjct: 2 SGTFLVDEINYQKQQISISDPENCMVKRLL----TFNTSGSPFSYGFSFYYTFLTCPNEV 61
Query: 132 ATSRFPVLS--CLSNSTSSVVATSSMSYVRSMSKSNSCRIMANLTVP--VAYPD---EAN 191
+ ++S CLSNSTSS ATS++++ + + SC+I+ L VP V Y D E
Sbjct: 62 VIPVWSLMSIPCLSNSTSSFFATSNLTFSKLLPP--SCQIVKGLYVPVDVIYKDVITEEK 121
Query: 192 QFLTDHY-GDLLLTWNSPACSICETEGRLCGFKSNSGLGIACFNKYSTGENNGLRILRII 251
F T + G++LL W+SP C CE E CGFK+ + L + + LR L I
Sbjct: 122 GFSTVPWLGNVLLEWSSPNCRGCEKESLRCGFKNKASLEVKYLADPPDETKSRLRPLII- 181
Query: 252 CVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQHQQQVNPALETEPP---IRLSGL 311
+C+ G C A ++ NQ + + T+ P + +GL
Sbjct: 182 --------TLCIIGGITATCIAAIRIYNSERFVNQRRQNAAITARNTTQQPRGVVVTTGL 241
Query: 312 DESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKDTVRCIPECKHCFHVDCIDQWLR 371
D+STI+SY+KV LGESRRLPG NG CPICL EY +K+TVRC+PEC HCFHV CID+WL+
Sbjct: 242 DQSTIESYKKVELGESRRLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLK 299
Query: 372 VNSSCPLCRNSPS 374
++SSCP+CRNS S
Sbjct: 302 IHSSCPVCRNSRS 299
BLAST of CmaCh00G002910 vs. TAIR 10
Match:
AT2G46495.1 (RING/U-box superfamily protein )
HSP 1 Score: 303.1 bits (775), Expect = 3.1e-82
Identity = 180/383 (47.00%), Postives = 241/383 (62.92%), Query Frame = 0
Query: 1 MDFS-HIFL-LFFLFILPTLSTAQSCSISKCMKDNFGIRFPFRIPELQPARCGYPGFNLA 60
M FS +FL LFFLF L S Q CS S C +D+ +RFPF + QP CG+ GFNL
Sbjct: 1 MTFSKQLFLYLFFLFPLLHASHPQQCSSSSCGRDDVHVRFPFWLLSKQPELCGHAGFNLQ 60
Query: 61 CNDVGVSTLNLSSSEQFLVRNIDYVAQQIQLYDPDVCLPKRLLLQGFNFDLSNSPFLLPF 120
C + L L +S FLVR IDY++QQI+LYDP+ CL ++LL FD+S SPF +
Sbjct: 61 CTASPKTALKLPNSGTFLVREIDYLSQQIRLYDPENCLARKLL----TFDISRSPFSALY 120
Query: 121 SKNFTFLSCQPQFA-TSRFPVLSCLSNSTSSVVATSSMSYVRSMSKSNSCRIMANLTVPV 180
++TFLSC + A +SRF + CL NST+S +AT+S+ +SM SC+I+ L VPV
Sbjct: 121 LVSYTFLSCPNEVAKSSRFDSIPCLGNSTTSFLATTSLDLAKSMLP--SCQIVKTLDVPV 180
Query: 181 A--YPDEANQFLTD-HYGDLLLTWNSPACSICETEGRLCGFKSNSGLGIACFNKYSTGEN 240
+ + ++F TD + DL L W+SP+CS CE + CGF+SN+ L + CF ++G N
Sbjct: 181 SRRVIAKKSRFSTDVNDKDLWLKWDSPSCSDCERDFLRCGFRSNTSLQVKCFPFENSGYN 240
Query: 241 NGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQHQQQVN-PALETEP 300
++L+II + II P + +F C A G+ S R + Q+ V AL+
Sbjct: 241 TEPQVLKIILLSIIGP--LTIFA----TCIA---VGVCTSERFASLIQRNVAIAALQPNE 300
Query: 301 PIRLSGLDESTIDSYQKVILGESRRLPGPN-GTTCPICLGEYLTKDTVRCIPECKHCFHV 360
I +GLDES I+SY+K LGESRRLPG N CPICL EY +K+TVRCIPEC HCFH
Sbjct: 301 VIVTTGLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCFHS 360
Query: 361 DCIDQWLRVNSSCPLCRNSPSPS 376
+CID WL+++ SCPLCRNSPSP+
Sbjct: 361 ECIDVWLKIHGSCPLCRNSPSPA 368
BLAST of CmaCh00G002910 vs. TAIR 10
Match:
AT2G25410.1 (RING/U-box superfamily protein )
HSP 1 Score: 282.7 bits (722), Expect = 4.3e-76
Identity = 167/386 (43.26%), Postives = 219/386 (56.74%), Query Frame = 0
Query: 9 LFFLFILPTLSTAQS--CSISKCMKDNFGIRFPFRIPELQPARCGYPGFNLACNDVGVST 68
L FLF P L+ ++ C C +++ RFPF + QP CGY GFNL C D +T
Sbjct: 12 LIFLFFFPLLNASEQKPCYSFSCSQESVVARFPFSLFSYQPESCGYSGFNLICKDDANTT 71
Query: 69 LNLSSSEQFLVRNIDYVAQQIQLYDPDVCLPKRLLLQGFNFDLSNSPFLLPFSKNFTFLS 128
L L SE FLV+ IDY Q+I+L DP+ CL +RLL NFD S SPF S+N+TFL
Sbjct: 72 LKLPKSEPFLVKEIDYETQRIRLNDPENCLARRLL----NFDPSGSPFSFLRSRNYTFLI 131
Query: 129 CQPQF-ATSRFPVLSCLSNSTSSVVATSSMSYVRSMSKSNSCRIMANLTVP-------VA 188
C + T+ F + CL N+TSS + + S +SC I L +P
Sbjct: 132 CPKEANITASFRAIDCLGNTTSSFFV---VQFENLGSMPSSCHIFKILPLPFSWFVAYTT 191
Query: 189 YPDEANQFLTDHYGDLLLTWNSPACSICE--TEGRLCGFKSNSGLGIACFNKYSTG-ENN 248
YPD N D+ L W+SP C CE T R CGFK+N+ + CF+ + G N
Sbjct: 192 YPDGQNS------RDMWLKWDSPDCRDCERRTNSR-CGFKNNTSHQVECFSSVNPGLHNT 251
Query: 249 GLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQHQQQVNPALE---TE 308
GL++L+I+C+ ++ P F G +C S R +Q QQ V L T
Sbjct: 252 GLQVLKIMCLSLVGPLTALTFCVGLVMC---------SSERVSSQIQQAVVARLSGSVTS 311
Query: 309 PP---IRLSGLDESTIDSYQKVILGESRRLP-GPNGTTCPICLGEYLTKDTVRCIPECKH 368
P + GLDESTI+SY+KV LGESRRLP G N CPICL EY TK+TVRC+PEC+H
Sbjct: 312 QPSNEVARIGLDESTIESYKKVELGESRRLPTGSNDVVCPICLSEYATKETVRCLPECEH 371
Query: 369 CFHVDCIDQWLRVNSSCPLCRNSPSP 375
CFH +CID WL+++SSCP+CR++PSP
Sbjct: 372 CFHTECIDAWLKLHSSCPVCRSNPSP 374
BLAST of CmaCh00G002910 vs. TAIR 10
Match:
AT2G46494.1 (RING/U-box superfamily protein )
HSP 1 Score: 244.2 bits (622), Expect = 1.7e-64
Identity = 151/375 (40.27%), Postives = 199/375 (53.07%), Query Frame = 0
Query: 3 FSHIFLLFFLFILPTLSTAQSCSIS-----KCMKDNFGIRFPFRIPELQPARCGYPGFNL 62
F FLLFF+F L S CS S +C IRFPF C +P FNL
Sbjct: 8 FLLFFLLFFIFPLRHASNPSKCSSSNSRPHRCGPLEVPIRFPF---------CDHPLFNL 67
Query: 63 ACNDVGVSTLNLSSSEQFLVRNIDYVAQQIQLYDPDVCLPKRLLLQGFNFDLSNSPFLLP 122
C ++ + L L S F V+ IDY QQI + DP+ CL KRLL F++S SPF
Sbjct: 68 LCTNLNNTVLQLPMSGTFFVQYIDYRKQQIYINDPENCLAKRLL----TFNISGSPFSPR 127
Query: 123 FSKNFTFLSCQPQFA-TSRFPVLSCLSNSTSSVVATSSMSYVRSMSKSNSCRIMANLTVP 182
F +TFL+C + S +P + CLSNSTSS ATS+ + SM SC+I+ + VP
Sbjct: 128 FDTLYTFLTCPNELVLPSWYPSIPCLSNSTSSFFATSNFALAESMLP--SCQIVKRIYVP 187
Query: 183 VAYPDEANQFLTDHYGDLLLTWNSPACSICETEGRLCGFKSNSGLGIACFNKYSTGENNG 242
P +F + LLL WNSP C CE + CGFK+ + + CF +G +
Sbjct: 188 ADSPFAETRFSSYLNQSLLLEWNSPNCRGCEIDYLRCGFKNKASPEVKCFGAKKSGHLSR 247
Query: 243 LRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQHQQQVNPALETEPPIR 302
+ +IC+ II ++ V C A + RR+ A + +
Sbjct: 248 AVVAVLICLSIIGAVILFV------TCIAIRIHN-TPRRRHWAVPAAAATVMQQPREVMA 307
Query: 303 LSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKDTVRCIPECKHCFHVDCID 362
GLD+STI+ Y+ + LGESRR PG NG CPICL EY++K+TVR IPEC HCFH CID
Sbjct: 308 TRGLDQSTIEKYKTMELGESRRPPGTNGIVCPICLSEYVSKETVRFIPECDHCFHAKCID 360
Query: 363 QWLRVNSSCPLCRNS 372
WL+++ SCPLCRNS
Sbjct: 368 VWLKIHGSCPLCRNS 360
BLAST of CmaCh00G002910 vs. TAIR 10
Match:
AT5G53110.1 (RING/U-box superfamily protein )
HSP 1 Score: 244.2 bits (622), Expect = 1.7e-64
Identity = 152/379 (40.11%), Postives = 209/379 (55.15%), Query Frame = 0
Query: 8 LLFFLFILPTLSTAQS---CSISKCMKDNFGIRFPFRIPELQPARCGY-PGFNLAC--ND 67
LLF ++PT +T S C+ + C +D IRFPFR+ Q CGY GF+L C N
Sbjct: 11 LLFLSLLIPTTTTTTSTVTCTNAVCRRDGPIIRFPFRLKHQQSHSCGYDKGFDLTCDINA 70
Query: 68 VGVSTLNLSSSEQFLVRNIDYVAQQIQLYDPDVCLPKRLLLQGFNFDLSNSPFLLPFSKN 127
+T+ L S F V IDY AQ+I + DP+ CLP+R+L +L+++PF + +
Sbjct: 71 GNRTTITLPFSGNFTVEEIDYAAQEIWINDPNNCLPQRIL----QLNLNSTPFSGVYMRQ 130
Query: 128 FTFLSCQPQFATSRFPVL---SCLSNSTSSVVATSSMSYVRSMSKSNSCRIMANLTVPVA 187
FTF +C P RF L +CLS S+V AT S + +S S SCR+M + VPV
Sbjct: 131 FTFFNC-PTSEYLRFRPLNPITCLSGKNSTVFATPSPRVINYLS-SQSCRLMKTVYVPVR 190
Query: 188 YP-DEANQFLTDHYGDLLLTWNSPACSICETEGRLCGFKSNSGLGIACFNKYSTGENNGL 247
+P E +D +L LTW P CS CE +G CG KSNS I C + +
Sbjct: 191 WPFYEQIVSSSDLSDNLWLTWRVPRCSRCEIKGGKCGIKSNSSREIICSHVHKPAIPRRA 250
Query: 248 RILRIICVVIILPSLMCVFGFGCFICFARWGYGIADS--RRNQAQHQQQVNPALE--TEP 307
R I V +P + VFG CF+ Y S +R + ++N A
Sbjct: 251 RY--AIAVGAGIPGALIVFGLFCFV------YSKISSCIKRRRLVPTPEINNAQAHYLHS 310
Query: 308 PIRLSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKDTVRCIPECKHCFHVD 367
+ + GLD TI+SY K++LGES+RLP + TC ICL EY K+T+R IP+C+HCFH D
Sbjct: 311 SVIVMGLDGPTIESYPKIVLGESKRLPKVDDATCAICLSEYEPKETLRTIPQCQHCFHAD 370
Query: 368 CIDQWLRVNSSCPLCRNSP 373
CID+WL++N +CP+CRNSP
Sbjct: 371 CIDEWLKLNGTCPVCRNSP 375
BLAST of CmaCh00G002910 vs. TAIR 10
Match:
AT1G28040.1 (RING/U-box superfamily protein )
HSP 1 Score: 218.4 bits (555), Expect = 9.9e-57
Identity = 133/313 (42.49%), Postives = 180/313 (57.51%), Query Frame = 0
Query: 72 SEQFLVRNIDYVAQQIQLYDPDVCLPKRLLLQGFNFDLSNSPFLLPFSKNFTFLSCQPQF 131
S FLV I+Y QQI + DP+ C+ KRLL F+ S SPF FS +TFL+C +
Sbjct: 2 SGTFLVDEINYQKQQISISDPENCMVKRLL----TFNTSGSPFSYGFSFYYTFLTCPNEV 61
Query: 132 ATSRFPVLS--CLSNSTSSVVATSSMSYVRSMSKSNSCRIMANLTVP--VAYPD---EAN 191
+ ++S CLSNSTSS ATS++++ + + SC+I+ L VP V Y D E
Sbjct: 62 VIPVWSLMSIPCLSNSTSSFFATSNLTFSKLLPP--SCQIVKGLYVPVDVIYKDVITEEK 121
Query: 192 QFLTDHY-GDLLLTWNSPACSICETEGRLCGFKSNSGLGIACFNKYSTGENNGLRILRII 251
F T + G++LL W+SP C CE E CGFK+ + L + + LR L I
Sbjct: 122 GFSTVPWLGNVLLEWSSPNCRGCEKESLRCGFKNKASLEVKYLADPPDETKSRLRPLII- 181
Query: 252 CVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQHQQQVNPALETEPP---IRLSGL 311
+C+ G C A ++ NQ + + T+ P + +GL
Sbjct: 182 --------TLCIIGGITATCIAAIRIYNSERFVNQRRQNAAITARNTTQQPRGVVVTTGL 241
Query: 312 DESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKDTVRCIPECKHCFHVDCIDQWLR 371
D+STI+SY+KV LGESRRLPG NG CPICL EY +K+TVRC+PEC HCFHV CID+WL+
Sbjct: 242 DQSTIESYKKVELGESRRLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLK 299
Query: 372 VNSSCPLCRNSPS 374
++SSCP+CRNS S
Sbjct: 302 IHSSCPVCRNSRS 299
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P0CH01 | 4.3e-81 | 47.00 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A... | [more] |
Q9SKK8 | 6.0e-75 | 43.26 | RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2 | [more] |
P0CH02 | 2.4e-63 | 40.27 | Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana OX=3702 GN=ATL21B... | [more] |
P0CH03 | 2.1e-56 | 40.79 | Putative RING-H2 finger protein ATL21C OS=Arabidopsis thaliana OX=3702 GN=ATL21C... | [more] |
Q9C7E9 | 1.4e-55 | 42.49 | RING-H2 finger protein ATL20 OS=Arabidopsis thaliana OX=3702 GN=ATL20 PE=2 SV=2 | [more] |