CmaCh00G002910 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G002910
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RING-type domain-containing protein
Location	Cma_Chr00: 22612935 .. 22615514 (-)
RNA-Seq Expression	CmaCh00G002910
Synteny	CmaCh00G002910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAGAACTTTCAAAGCTTCTGACTTTAGAATAAAATGATGAAGTCAATAACATAAATATGAACTACTTCAAGTTACAAAAATTTTCCTTCTGGCAAAGCTTATGGATTTCTCACATATCTTTCTCCTCTTCTTCCTCTTCATCCTCCCCACTTTATCCACAGCTCAAAGTTGCTCTATTTCCAAGTGTATGAAGGACAACTTCGGCATCCGATTCCCGTTCCGAATTCCTGAGCTGCAACCTGCAAGATGTGGCTATCCTGGTTTCAACTTAGCCTGCAACGACGTGGGTGTGTCGACTCTAAATCTATCGTCTTCAGAACAATTTTTGGTAAGAAATATTGATTATGTTGCTCAACAGATACAGCTCTATGATCCAGATGTTTGCCTTCCTAAAAGGCTTCTTCTTCAAGGCTTCAACTTCGATCTCTCAAATTCTCCATTTCTGCTCCCTTTTAGTAAGAATTTCACCTTCCTAAGCTGTCAACCTCAATTTGCAACATCCCGATTTCCTGTCCTTAGCTGCCTTAGCAACTCCACCAGCTCGGTTGTGGCTACTTCTTCCATGAGTTATGTCAGGTCAATGTCAAAGTCAAACTCTTGCAGGATCATGGCTAATTTAACTGTCCCAGTTGCGTACCCAGATGAGGCCAATCAGTTTCTAACCGACCACTATGGTGATCTCCTGCTAACTTGGAATAGCCCTGCTTGCAGTATCTGCGAAACAGAAGGCAGGCTTTGTGGGTTCAAAAGCAACAGCGGCCTCGGCATTGCCTGTTTCAATAAGTACTCAACAGGTCAAAATTTTACCCTTTGTTGCTATTTCCTAAGTTCATGTTCTTCTTTAAACTCTTCATCTTCTGAAATGGATGAGAATGCATTGTTCGAGGAAAATGTAACGACCTAGTTTTCTACTTATCCTAAAGTCGTTACGGTATACCTATCATTTTAGGCTGAAATAATCATTTAAAATTTTATCATAAAAACATTGCTACGAACTTACATGTTTATTGAAAGGTCCTTAAAACACTTTAACATGAGTCAAAAGAACATAAGTAAAATAAAACATAAATGCCCTATACTAACTTATAGTCGACAAATTAAATGCAACCTAGCCCTATACTAACTTATAGTCTACAAAAATAAAATGCAAACTACCCTATGCATGTGACATGGTTTCCCGAGTTGCGATGCCACTGTCAGCCGTACATGGGAGTCTTGCTTTTACTTGAAAAATAAGAGTAACACATAACTTGAGTATTTTAAGAAATACTCATTAAGTGACCTTACTATTGAGGTAGATGCAAGCACACACAATCACGTGTGAGCCGTGTATAGAATAGTAAACATACATCTCATTACCCGCTTAGGATAGTCGGCTAAGGGAATACAGATTTAAATGATAGGTCAAATTCATGATTGTGTGTGCTTGCATCTAACCTCAATAGTGGGGTCACTTTACTAAGTATTTCTTAAAATACTTAAGCCATGTGTTACTCTTATTTTCCAAGTAAAGGCAAGACTCCCATGTACGGCTGACAATGACATCGCAACTCAAGAGACCATGTCACATGCATAGGGTAGTTTGTATTTTGTTTTTGTAGACGATAGGTTAGTATAGGGGCTAGGCTATATTTAATTTCATAGACTATATGTTATGCATACCCTAACGACTTTAGGTTAAGTAGAAATCTAGGGTAGTTACCTAAAAATTCAAATAAAAATAAATCATTGTTTTGTTCCGATTATGGTCAACTTTAACCCATATTGCAAAAATAAAGATACAGGCTGCTATATGAATCTTAGACTGGCTCTTGGTTGACTAAGACATAGATAAAGCTTATATTATAGGCAAGTTGAGATTAAAGTAATAACAGAAGAATATCATGGATGATGAAGGAATGACAAAGACACTTGTTCTCAGCTGCACGTCTCTTAATGATATCATTCATGATATAGTTTGCAAAAATATCAAACTTTAAATGATAAAATACCTTAAATTTCAGGGGAGAATAATGGCCTCAGAATATTGCGGATCATCTGTGTGGTGATTATTCTACCGAGTTTGATGTGTGTCTTTGGATTTGGCTGCTTCATCTGCTTCGCAAGGTGGGGCTATGGCATTGCAGACAGCAGAAGAAACCAAGCTCAGCATCAGCAGCAGGTCAATCCAGCTTTAGAGACAGAGCCACCGATCCGTTTGAGTGGTCTGGATGAATCAACCATTGATTCATATCAGAAGGTAATCCTTGGAGAAAGCCGGCGGCTGCCTGGCCCCAATGGCACCACCTGCCCCATATGCCTCGGAGAGTACTTAACCAAAGACACTGTCAGATGCATTCCTGAGTGTAAGCATTGCTTCCATGTGGATTGTATTGATCAATGGCTTCGTGTCAACAGCAGCTGCCCTCTTTGTCGAAACTCTCCCTCTCCCTCCCCTTCTCACTAACTTCAATTCTTCTACGTAACAAGAACACAACAATGCAAAGTCAGTGTGTACAGAGATTCAAGTAATTTAAGAAAACCCCACTTTTTTGTGTGTCAATAACCAAAAGAAACTCATAAAATCGGCATGGTAGCAG

mRNA sequence

ATAGAACTTTCAAAGCTTCTGACTTTAGAATAAAATGATGAAGTCAATAACATAAATATGAACTACTTCAAGTTACAAAAATTTTCCTTCTGGCAAAGCTTATGGATTTCTCACATATCTTTCTCCTCTTCTTCCTCTTCATCCTCCCCACTTTATCCACAGCTCAAAGTTGCTCTATTTCCAAGTGTATGAAGGACAACTTCGGCATCCGATTCCCGTTCCGAATTCCTGAGCTGCAACCTGCAAGATGTGGCTATCCTGGTTTCAACTTAGCCTGCAACGACGTGGGTGTGTCGACTCTAAATCTATCGTCTTCAGAACAATTTTTGGTAAGAAATATTGATTATGTTGCTCAACAGATACAGCTCTATGATCCAGATGTTTGCCTTCCTAAAAGGCTTCTTCTTCAAGGCTTCAACTTCGATCTCTCAAATTCTCCATTTCTGCTCCCTTTTAGTAAGAATTTCACCTTCCTAAGCTGTCAACCTCAATTTGCAACATCCCGATTTCCTGTCCTTAGCTGCCTTAGCAACTCCACCAGCTCGGTTGTGGCTACTTCTTCCATGAGTTATGTCAGGTCAATGTCAAAGTCAAACTCTTGCAGGATCATGGCTAATTTAACTGTCCCAGTTGCGTACCCAGATGAGGCCAATCAGTTTCTAACCGACCACTATGGTGATCTCCTGCTAACTTGGAATAGCCCTGCTTGCAGTATCTGCGAAACAGAAGGCAGGCTTTGTGGGTTCAAAAGCAACAGCGGCCTCGGCATTGCCTGTTTCAATAAGTACTCAACAGGGGAGAATAATGGCCTCAGAATATTGCGGATCATCTGTGTGGTGATTATTCTACCGAGTTTGATGTGTGTCTTTGGATTTGGCTGCTTCATCTGCTTCGCAAGGTGGGGCTATGGCATTGCAGACAGCAGAAGAAACCAAGCTCAGCATCAGCAGCAGGTCAATCCAGCTTTAGAGACAGAGCCACCGATCCGTTTGAGTGGTCTGGATGAATCAACCATTGATTCATATCAGAAGGTAATCCTTGGAGAAAGCCGGCGGCTGCCTGGCCCCAATGGCACCACCTGCCCCATATGCCTCGGAGAGTACTTAACCAAAGACACTGTCAGATGCATTCCTGAGTGTAAGCATTGCTTCCATGTGGATTGTATTGATCAATGGCTTCGTGTCAACAGCAGCTGCCCTCTTTGTCGAAACTCTCCCTCTCCCTCCCCTTCTCACTAACTTCAATTCTTCTACGTAACAAGAACACAACAATGCAAAGTCAGTGTGTACAGAGATTCAAGTAATTTAAGAAAACCCCACTTTTTTGTGTGTCAATAACCAAAAGAAACTCATAAAATCGGCATGGTAGCAG

Coding sequence (CDS)

ATGGATTTCTCACATATCTTTCTCCTCTTCTTCCTCTTCATCCTCCCCACTTTATCCACAGCTCAAAGTTGCTCTATTTCCAAGTGTATGAAGGACAACTTCGGCATCCGATTCCCGTTCCGAATTCCTGAGCTGCAACCTGCAAGATGTGGCTATCCTGGTTTCAACTTAGCCTGCAACGACGTGGGTGTGTCGACTCTAAATCTATCGTCTTCAGAACAATTTTTGGTAAGAAATATTGATTATGTTGCTCAACAGATACAGCTCTATGATCCAGATGTTTGCCTTCCTAAAAGGCTTCTTCTTCAAGGCTTCAACTTCGATCTCTCAAATTCTCCATTTCTGCTCCCTTTTAGTAAGAATTTCACCTTCCTAAGCTGTCAACCTCAATTTGCAACATCCCGATTTCCTGTCCTTAGCTGCCTTAGCAACTCCACCAGCTCGGTTGTGGCTACTTCTTCCATGAGTTATGTCAGGTCAATGTCAAAGTCAAACTCTTGCAGGATCATGGCTAATTTAACTGTCCCAGTTGCGTACCCAGATGAGGCCAATCAGTTTCTAACCGACCACTATGGTGATCTCCTGCTAACTTGGAATAGCCCTGCTTGCAGTATCTGCGAAACAGAAGGCAGGCTTTGTGGGTTCAAAAGCAACAGCGGCCTCGGCATTGCCTGTTTCAATAAGTACTCAACAGGGGAGAATAATGGCCTCAGAATATTGCGGATCATCTGTGTGGTGATTATTCTACCGAGTTTGATGTGTGTCTTTGGATTTGGCTGCTTCATCTGCTTCGCAAGGTGGGGCTATGGCATTGCAGACAGCAGAAGAAACCAAGCTCAGCATCAGCAGCAGGTCAATCCAGCTTTAGAGACAGAGCCACCGATCCGTTTGAGTGGTCTGGATGAATCAACCATTGATTCATATCAGAAGGTAATCCTTGGAGAAAGCCGGCGGCTGCCTGGCCCCAATGGCACCACCTGCCCCATATGCCTCGGAGAGTACTTAACCAAAGACACTGTCAGATGCATTCCTGAGTGTAAGCATTGCTTCCATGTGGATTGTATTGATCAATGGCTTCGTGTCAACAGCAGCTGCCCTCTTTGTCGAAACTCTCCCTCTCCCTCCCCTTCTCACTAA

Protein sequence

MDFSHIFLLFFLFILPTLSTAQSCSISKCMKDNFGIRFPFRIPELQPARCGYPGFNLACNDVGVSTLNLSSSEQFLVRNIDYVAQQIQLYDPDVCLPKRLLLQGFNFDLSNSPFLLPFSKNFTFLSCQPQFATSRFPVLSCLSNSTSSVVATSSMSYVRSMSKSNSCRIMANLTVPVAYPDEANQFLTDHYGDLLLTWNSPACSICETEGRLCGFKSNSGLGIACFNKYSTGENNGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQHQQQVNPALETEPPIRLSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKDTVRCIPECKHCFHVDCIDQWLRVNSSCPLCRNSPSPSPSH

Homology

[Close]

BLAST of CmaCh00G002910 vs. ExPASy Swiss-Prot
Match: P0CH01 (Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 4.3e-81
Identity = 180/383 (47.00%), Postives = 241/383 (62.92%), Query Frame = 0


Query: 1   MDFS-HIFL-LFFLFILPTLSTAQSCSISKCMKDNFGIRFPFRIPELQPARCGYPGFNLA 60
           M FS  +FL LFFLF L   S  Q CS S C +D+  +RFPF +   QP  CG+ GFNL 
Sbjct: 1   MTFSKQLFLYLFFLFPLLHASHPQQCSSSSCGRDDVHVRFPFWLLSKQPELCGHAGFNLQ 60

Query: 61  CNDVGVSTLNLSSSEQFLVRNIDYVAQQIQLYDPDVCLPKRLLLQGFNFDLSNSPFLLPF 120
           C     + L L +S  FLVR IDY++QQI+LYDP+ CL ++LL     FD+S SPF   +
Sbjct: 61  CTASPKTALKLPNSGTFLVREIDYLSQQIRLYDPENCLARKLL----TFDISRSPFSALY 120

Query: 121 SKNFTFLSCQPQFA-TSRFPVLSCLSNSTSSVVATSSMSYVRSMSKSNSCRIMANLTVPV 180
             ++TFLSC  + A +SRF  + CL NST+S +AT+S+   +SM    SC+I+  L VPV
Sbjct: 121 LVSYTFLSCPNEVAKSSRFDSIPCLGNSTTSFLATTSLDLAKSMLP--SCQIVKTLDVPV 180

Query: 181 A--YPDEANQFLTD-HYGDLLLTWNSPACSICETEGRLCGFKSNSGLGIACFNKYSTGEN 240
           +     + ++F TD +  DL L W+SP+CS CE +   CGF+SN+ L + CF   ++G N
Sbjct: 181 SRRVIAKKSRFSTDVNDKDLWLKWDSPSCSDCERDFLRCGFRSNTSLQVKCFPFENSGYN 240

Query: 241 NGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQHQQQVN-PALETEP 300
              ++L+II + II P  + +F      C A    G+  S R  +  Q+ V   AL+   
Sbjct: 241 TEPQVLKIILLSIIGP--LTIFA----TCIA---VGVCTSERFASLIQRNVAIAALQPNE 300

Query: 301 PIRLSGLDESTIDSYQKVILGESRRLPGPN-GTTCPICLGEYLTKDTVRCIPECKHCFHV 360
            I  +GLDES I+SY+K  LGESRRLPG N    CPICL EY +K+TVRCIPEC HCFH 
Sbjct: 301 VIVTTGLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCFHS 360

Query: 361 DCIDQWLRVNSSCPLCRNSPSPS 376
           +CID WL+++ SCPLCRNSPSP+
Sbjct: 361 ECIDVWLKIHGSCPLCRNSPSPA 368

[Close]

BLAST of CmaCh00G002910 vs. ExPASy Swiss-Prot
Match: Q9SKK8 (RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2)

HSP 1 Score: 282.7 bits (722), Expect = 6.0e-75
Identity = 167/386 (43.26%), Postives = 219/386 (56.74%), Query Frame = 0


Query: 9   LFFLFILPTLSTAQS--CSISKCMKDNFGIRFPFRIPELQPARCGYPGFNLACNDVGVST 68
           L FLF  P L+ ++   C    C +++   RFPF +   QP  CGY GFNL C D   +T
Sbjct: 12  LIFLFFFPLLNASEQKPCYSFSCSQESVVARFPFSLFSYQPESCGYSGFNLICKDDANTT 71

Query: 69  LNLSSSEQFLVRNIDYVAQQIQLYDPDVCLPKRLLLQGFNFDLSNSPFLLPFSKNFTFLS 128
           L L  SE FLV+ IDY  Q+I+L DP+ CL +RLL    NFD S SPF    S+N+TFL 
Sbjct: 72  LKLPKSEPFLVKEIDYETQRIRLNDPENCLARRLL----NFDPSGSPFSFLRSRNYTFLI 131

Query: 129 CQPQF-ATSRFPVLSCLSNSTSSVVATSSMSYVRSMSKSNSCRIMANLTVP-------VA 188
           C  +   T+ F  + CL N+TSS      + +    S  +SC I   L +P         
Sbjct: 132 CPKEANITASFRAIDCLGNTTSSFFV---VQFENLGSMPSSCHIFKILPLPFSWFVAYTT 191

Query: 189 YPDEANQFLTDHYGDLLLTWNSPACSICE--TEGRLCGFKSNSGLGIACFNKYSTG-ENN 248
           YPD  N        D+ L W+SP C  CE  T  R CGFK+N+   + CF+  + G  N 
Sbjct: 192 YPDGQNS------RDMWLKWDSPDCRDCERRTNSR-CGFKNNTSHQVECFSSVNPGLHNT 251

Query: 249 GLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQHQQQVNPALE---TE 308
           GL++L+I+C+ ++ P     F  G  +C          S R  +Q QQ V   L    T 
Sbjct: 252 GLQVLKIMCLSLVGPLTALTFCVGLVMC---------SSERVSSQIQQAVVARLSGSVTS 311

Query: 309 PP---IRLSGLDESTIDSYQKVILGESRRLP-GPNGTTCPICLGEYLTKDTVRCIPECKH 368
            P   +   GLDESTI+SY+KV LGESRRLP G N   CPICL EY TK+TVRC+PEC+H
Sbjct: 312 QPSNEVARIGLDESTIESYKKVELGESRRLPTGSNDVVCPICLSEYATKETVRCLPECEH 371

Query: 369 CFHVDCIDQWLRVNSSCPLCRNSPSP 375
           CFH +CID WL+++SSCP+CR++PSP
Sbjct: 372 CFHTECIDAWLKLHSSCPVCRSNPSP 374

[Close]

BLAST of CmaCh00G002910 vs. ExPASy Swiss-Prot
Match: P0CH02 (Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana OX=3702 GN=ATL21B PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 2.4e-63
Identity = 151/375 (40.27%), Postives = 199/375 (53.07%), Query Frame = 0


Query: 3   FSHIFLLFFLFILPTLSTAQSCSIS-----KCMKDNFGIRFPFRIPELQPARCGYPGFNL 62
           F   FLLFF+F L   S    CS S     +C      IRFPF         C +P FNL
Sbjct: 8   FLLFFLLFFIFPLRHASNPSKCSSSNSRPHRCGPLEVPIRFPF---------CDHPLFNL 67

Query: 63  ACNDVGVSTLNLSSSEQFLVRNIDYVAQQIQLYDPDVCLPKRLLLQGFNFDLSNSPFLLP 122
            C ++  + L L  S  F V+ IDY  QQI + DP+ CL KRLL     F++S SPF   
Sbjct: 68  LCTNLNNTVLQLPMSGTFFVQYIDYRKQQIYINDPENCLAKRLL----TFNISGSPFSPR 127

Query: 123 FSKNFTFLSCQPQFA-TSRFPVLSCLSNSTSSVVATSSMSYVRSMSKSNSCRIMANLTVP 182
           F   +TFL+C  +    S +P + CLSNSTSS  ATS+ +   SM    SC+I+  + VP
Sbjct: 128 FDTLYTFLTCPNELVLPSWYPSIPCLSNSTSSFFATSNFALAESMLP--SCQIVKRIYVP 187

Query: 183 VAYPDEANQFLTDHYGDLLLTWNSPACSICETEGRLCGFKSNSGLGIACFNKYSTGENNG 242
              P    +F +     LLL WNSP C  CE +   CGFK+ +   + CF    +G  + 
Sbjct: 188 ADSPFAETRFSSYLNQSLLLEWNSPNCRGCEIDYLRCGFKNKASPEVKCFGAKKSGHLSR 247

Query: 243 LRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQHQQQVNPALETEPPIR 302
             +  +IC+ II   ++ V       C A   +     RR+ A          +    + 
Sbjct: 248 AVVAVLICLSIIGAVILFV------TCIAIRIHN-TPRRRHWAVPAAAATVMQQPREVMA 307

Query: 303 LSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKDTVRCIPECKHCFHVDCID 362
             GLD+STI+ Y+ + LGESRR PG NG  CPICL EY++K+TVR IPEC HCFH  CID
Sbjct: 308 TRGLDQSTIEKYKTMELGESRRPPGTNGIVCPICLSEYVSKETVRFIPECDHCFHAKCID 360

Query: 363 QWLRVNSSCPLCRNS 372
            WL+++ SCPLCRNS
Sbjct: 368 VWLKIHGSCPLCRNS 360

[Close]

BLAST of CmaCh00G002910 vs. ExPASy Swiss-Prot
Match: P0CH03 (Putative RING-H2 finger protein ATL21C OS=Arabidopsis thaliana OX=3702 GN=ATL21C PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.1e-56
Identity = 155/380 (40.79%), Postives = 202/380 (53.16%), Query Frame = 0


Query: 3   FSHIFLLFFLFILPTLSTAQSCSIS-----KCMKDNFGIRFPFRIPELQPARCGYPGFNL 62
           F  +F L FL  L   S   +CS S     +C      IRFPF         C +  FNL
Sbjct: 8   FPFVFFLLFLVSLRHASNPNNCSSSSSRPLRCGPLEVPIRFPF---------CNHARFNL 67

Query: 63  ACNDVGVSTLNLSSSEQFLVRNIDYVAQQIQLYDPDVCLPKRLLLQGFNFDLSNSPFLLP 122
            C D+  + L L  S  FLVR+IDY  Q+I + DP+ CL KRLL     F++S SPF   
Sbjct: 68  HCTDLNKTVLELPMSGTFLVRDIDYRRQKIYINDPN-CLAKRLL----TFNISGSPFSPH 127

Query: 123 FSKNFTFLSCQPQFA-TSRFPVLSCLSNSTSSVVATSSMSYVRSMSKSNSCRIMANLTVP 182
           F   +TFLSC  +    S +P + CLSNSTSS  ATS+ S  +SM    SC+I+  L VP
Sbjct: 128 FDILYTFLSCPNEVVLPSWYPSIPCLSNSTSSFFATSNYSLAQSMLP--SCQIVKRLHVP 187

Query: 183 VAYPDEANQFLTD-HYGDLLLTWNSPAC-SICETEGRLCGFKSNSGLGIACFN-KYSTGE 242
              P    +F +D +   LLL W  P C + C    +  G   NS +    F+  Y + E
Sbjct: 188 ATSPFGETRFSSDLNNQSLLLEWALPDCRAKCLGATKKTGTIYNSNIFSCSFSFLYDSRE 247

Query: 243 --NNGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQHQQQVNPALET 302
              NG  +   + V++I  S + VF F   I    +     DS    A   QQ    +  
Sbjct: 248 LFING-NLSSGVLVLVISLSAVTVFVFPTCIAIRLYDSERFDSAIAAATVMQQPREVMAR 307

Query: 303 EPPIRLSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKDTVRCIPECKHCFH 362
                  GLD+STI++++K+ LGESRRL G NG  CPICL EY +K+TVR IPEC HCFH
Sbjct: 308 R------GLDQSTIETFKKMELGESRRLSGTNGIVCPICLSEYASKETVRFIPECDHCFH 364

Query: 363 VDCIDQWLRVNSSCPLCRNS 372
           V+CID WL+++ SCPLCRNS
Sbjct: 368 VECIDVWLKIHGSCPLCRNS 364

[Close]

BLAST of CmaCh00G002910 vs. ExPASy Swiss-Prot
Match: Q9C7E9 (RING-H2 finger protein ATL20 OS=Arabidopsis thaliana OX=3702 GN=ATL20 PE=2 SV=2)

HSP 1 Score: 218.4 bits (555), Expect = 1.4e-55
Identity = 133/313 (42.49%), Postives = 180/313 (57.51%), Query Frame = 0


Query: 72  SEQFLVRNIDYVAQQIQLYDPDVCLPKRLLLQGFNFDLSNSPFLLPFSKNFTFLSCQPQF 131
           S  FLV  I+Y  QQI + DP+ C+ KRLL     F+ S SPF   FS  +TFL+C  + 
Sbjct: 2   SGTFLVDEINYQKQQISISDPENCMVKRLL----TFNTSGSPFSYGFSFYYTFLTCPNEV 61

Query: 132 ATSRFPVLS--CLSNSTSSVVATSSMSYVRSMSKSNSCRIMANLTVP--VAYPD---EAN 191
               + ++S  CLSNSTSS  ATS++++ + +    SC+I+  L VP  V Y D   E  
Sbjct: 62  VIPVWSLMSIPCLSNSTSSFFATSNLTFSKLLPP--SCQIVKGLYVPVDVIYKDVITEEK 121

Query: 192 QFLTDHY-GDLLLTWNSPACSICETEGRLCGFKSNSGLGIACFNKYSTGENNGLRILRII 251
            F T  + G++LL W+SP C  CE E   CGFK+ + L +           + LR L I 
Sbjct: 122 GFSTVPWLGNVLLEWSSPNCRGCEKESLRCGFKNKASLEVKYLADPPDETKSRLRPLII- 181

Query: 252 CVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQHQQQVNPALETEPP---IRLSGL 311
                    +C+ G     C A      ++   NQ +    +     T+ P   +  +GL
Sbjct: 182 --------TLCIIGGITATCIAAIRIYNSERFVNQRRQNAAITARNTTQQPRGVVVTTGL 241

Query: 312 DESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKDTVRCIPECKHCFHVDCIDQWLR 371
           D+STI+SY+KV LGESRRLPG NG  CPICL EY +K+TVRC+PEC HCFHV CID+WL+
Sbjct: 242 DQSTIESYKKVELGESRRLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLK 299

Query: 372 VNSSCPLCRNSPS 374
           ++SSCP+CRNS S
Sbjct: 302 IHSSCPVCRNSRS 299

[Close]

BLAST of CmaCh00G002910 vs. TAIR 10
Match: AT2G46495.1 (RING/U-box superfamily protein )

HSP 1 Score: 303.1 bits (775), Expect = 3.1e-82
Identity = 180/383 (47.00%), Postives = 241/383 (62.92%), Query Frame = 0


Query: 1   MDFS-HIFL-LFFLFILPTLSTAQSCSISKCMKDNFGIRFPFRIPELQPARCGYPGFNLA 60
           M FS  +FL LFFLF L   S  Q CS S C +D+  +RFPF +   QP  CG+ GFNL 
Sbjct: 1   MTFSKQLFLYLFFLFPLLHASHPQQCSSSSCGRDDVHVRFPFWLLSKQPELCGHAGFNLQ 60

Query: 61  CNDVGVSTLNLSSSEQFLVRNIDYVAQQIQLYDPDVCLPKRLLLQGFNFDLSNSPFLLPF 120
           C     + L L +S  FLVR IDY++QQI+LYDP+ CL ++LL     FD+S SPF   +
Sbjct: 61  CTASPKTALKLPNSGTFLVREIDYLSQQIRLYDPENCLARKLL----TFDISRSPFSALY 120

Query: 121 SKNFTFLSCQPQFA-TSRFPVLSCLSNSTSSVVATSSMSYVRSMSKSNSCRIMANLTVPV 180
             ++TFLSC  + A +SRF  + CL NST+S +AT+S+   +SM    SC+I+  L VPV
Sbjct: 121 LVSYTFLSCPNEVAKSSRFDSIPCLGNSTTSFLATTSLDLAKSMLP--SCQIVKTLDVPV 180

Query: 181 A--YPDEANQFLTD-HYGDLLLTWNSPACSICETEGRLCGFKSNSGLGIACFNKYSTGEN 240
           +     + ++F TD +  DL L W+SP+CS CE +   CGF+SN+ L + CF   ++G N
Sbjct: 181 SRRVIAKKSRFSTDVNDKDLWLKWDSPSCSDCERDFLRCGFRSNTSLQVKCFPFENSGYN 240

Query: 241 NGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQHQQQVN-PALETEP 300
              ++L+II + II P  + +F      C A    G+  S R  +  Q+ V   AL+   
Sbjct: 241 TEPQVLKIILLSIIGP--LTIFA----TCIA---VGVCTSERFASLIQRNVAIAALQPNE 300

Query: 301 PIRLSGLDESTIDSYQKVILGESRRLPGPN-GTTCPICLGEYLTKDTVRCIPECKHCFHV 360
            I  +GLDES I+SY+K  LGESRRLPG N    CPICL EY +K+TVRCIPEC HCFH 
Sbjct: 301 VIVTTGLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCFHS 360

Query: 361 DCIDQWLRVNSSCPLCRNSPSPS 376
           +CID WL+++ SCPLCRNSPSP+
Sbjct: 361 ECIDVWLKIHGSCPLCRNSPSPA 368

[Close]

BLAST of CmaCh00G002910 vs. TAIR 10
Match: AT2G25410.1 (RING/U-box superfamily protein )

HSP 1 Score: 282.7 bits (722), Expect = 4.3e-76
Identity = 167/386 (43.26%), Postives = 219/386 (56.74%), Query Frame = 0


Query: 9   LFFLFILPTLSTAQS--CSISKCMKDNFGIRFPFRIPELQPARCGYPGFNLACNDVGVST 68
           L FLF  P L+ ++   C    C +++   RFPF +   QP  CGY GFNL C D   +T
Sbjct: 12  LIFLFFFPLLNASEQKPCYSFSCSQESVVARFPFSLFSYQPESCGYSGFNLICKDDANTT 71

Query: 69  LNLSSSEQFLVRNIDYVAQQIQLYDPDVCLPKRLLLQGFNFDLSNSPFLLPFSKNFTFLS 128
           L L  SE FLV+ IDY  Q+I+L DP+ CL +RLL    NFD S SPF    S+N+TFL 
Sbjct: 72  LKLPKSEPFLVKEIDYETQRIRLNDPENCLARRLL----NFDPSGSPFSFLRSRNYTFLI 131

Query: 129 CQPQF-ATSRFPVLSCLSNSTSSVVATSSMSYVRSMSKSNSCRIMANLTVP-------VA 188
           C  +   T+ F  + CL N+TSS      + +    S  +SC I   L +P         
Sbjct: 132 CPKEANITASFRAIDCLGNTTSSFFV---VQFENLGSMPSSCHIFKILPLPFSWFVAYTT 191

Query: 189 YPDEANQFLTDHYGDLLLTWNSPACSICE--TEGRLCGFKSNSGLGIACFNKYSTG-ENN 248
           YPD  N        D+ L W+SP C  CE  T  R CGFK+N+   + CF+  + G  N 
Sbjct: 192 YPDGQNS------RDMWLKWDSPDCRDCERRTNSR-CGFKNNTSHQVECFSSVNPGLHNT 251

Query: 249 GLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQHQQQVNPALE---TE 308
           GL++L+I+C+ ++ P     F  G  +C          S R  +Q QQ V   L    T 
Sbjct: 252 GLQVLKIMCLSLVGPLTALTFCVGLVMC---------SSERVSSQIQQAVVARLSGSVTS 311

Query: 309 PP---IRLSGLDESTIDSYQKVILGESRRLP-GPNGTTCPICLGEYLTKDTVRCIPECKH 368
            P   +   GLDESTI+SY+KV LGESRRLP G N   CPICL EY TK+TVRC+PEC+H
Sbjct: 312 QPSNEVARIGLDESTIESYKKVELGESRRLPTGSNDVVCPICLSEYATKETVRCLPECEH 371

Query: 369 CFHVDCIDQWLRVNSSCPLCRNSPSP 375
           CFH +CID WL+++SSCP+CR++PSP
Sbjct: 372 CFHTECIDAWLKLHSSCPVCRSNPSP 374

[Close]

BLAST of CmaCh00G002910 vs. TAIR 10
Match: AT2G46494.1 (RING/U-box superfamily protein )

HSP 1 Score: 244.2 bits (622), Expect = 1.7e-64
Identity = 151/375 (40.27%), Postives = 199/375 (53.07%), Query Frame = 0


Query: 3   FSHIFLLFFLFILPTLSTAQSCSIS-----KCMKDNFGIRFPFRIPELQPARCGYPGFNL 62
           F   FLLFF+F L   S    CS S     +C      IRFPF         C +P FNL
Sbjct: 8   FLLFFLLFFIFPLRHASNPSKCSSSNSRPHRCGPLEVPIRFPF---------CDHPLFNL 67

Query: 63  ACNDVGVSTLNLSSSEQFLVRNIDYVAQQIQLYDPDVCLPKRLLLQGFNFDLSNSPFLLP 122
            C ++  + L L  S  F V+ IDY  QQI + DP+ CL KRLL     F++S SPF   
Sbjct: 68  LCTNLNNTVLQLPMSGTFFVQYIDYRKQQIYINDPENCLAKRLL----TFNISGSPFSPR 127

Query: 123 FSKNFTFLSCQPQFA-TSRFPVLSCLSNSTSSVVATSSMSYVRSMSKSNSCRIMANLTVP 182
           F   +TFL+C  +    S +P + CLSNSTSS  ATS+ +   SM    SC+I+  + VP
Sbjct: 128 FDTLYTFLTCPNELVLPSWYPSIPCLSNSTSSFFATSNFALAESMLP--SCQIVKRIYVP 187

Query: 183 VAYPDEANQFLTDHYGDLLLTWNSPACSICETEGRLCGFKSNSGLGIACFNKYSTGENNG 242
              P    +F +     LLL WNSP C  CE +   CGFK+ +   + CF    +G  + 
Sbjct: 188 ADSPFAETRFSSYLNQSLLLEWNSPNCRGCEIDYLRCGFKNKASPEVKCFGAKKSGHLSR 247

Query: 243 LRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQHQQQVNPALETEPPIR 302
             +  +IC+ II   ++ V       C A   +     RR+ A          +    + 
Sbjct: 248 AVVAVLICLSIIGAVILFV------TCIAIRIHN-TPRRRHWAVPAAAATVMQQPREVMA 307

Query: 303 LSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKDTVRCIPECKHCFHVDCID 362
             GLD+STI+ Y+ + LGESRR PG NG  CPICL EY++K+TVR IPEC HCFH  CID
Sbjct: 308 TRGLDQSTIEKYKTMELGESRRPPGTNGIVCPICLSEYVSKETVRFIPECDHCFHAKCID 360

Query: 363 QWLRVNSSCPLCRNS 372
            WL+++ SCPLCRNS
Sbjct: 368 VWLKIHGSCPLCRNS 360

[Close]

BLAST of CmaCh00G002910 vs. TAIR 10
Match: AT5G53110.1 (RING/U-box superfamily protein )

HSP 1 Score: 244.2 bits (622), Expect = 1.7e-64
Identity = 152/379 (40.11%), Postives = 209/379 (55.15%), Query Frame = 0


Query: 8   LLFFLFILPTLSTAQS---CSISKCMKDNFGIRFPFRIPELQPARCGY-PGFNLAC--ND 67
           LLF   ++PT +T  S   C+ + C +D   IRFPFR+   Q   CGY  GF+L C  N 
Sbjct: 11  LLFLSLLIPTTTTTTSTVTCTNAVCRRDGPIIRFPFRLKHQQSHSCGYDKGFDLTCDINA 70

Query: 68  VGVSTLNLSSSEQFLVRNIDYVAQQIQLYDPDVCLPKRLLLQGFNFDLSNSPFLLPFSKN 127
              +T+ L  S  F V  IDY AQ+I + DP+ CLP+R+L      +L+++PF   + + 
Sbjct: 71  GNRTTITLPFSGNFTVEEIDYAAQEIWINDPNNCLPQRIL----QLNLNSTPFSGVYMRQ 130

Query: 128 FTFLSCQPQFATSRFPVL---SCLSNSTSSVVATSSMSYVRSMSKSNSCRIMANLTVPVA 187
           FTF +C P     RF  L   +CLS   S+V AT S   +  +S S SCR+M  + VPV 
Sbjct: 131 FTFFNC-PTSEYLRFRPLNPITCLSGKNSTVFATPSPRVINYLS-SQSCRLMKTVYVPVR 190

Query: 188 YP-DEANQFLTDHYGDLLLTWNSPACSICETEGRLCGFKSNSGLGIACFNKYSTGENNGL 247
           +P  E     +D   +L LTW  P CS CE +G  CG KSNS   I C + +        
Sbjct: 191 WPFYEQIVSSSDLSDNLWLTWRVPRCSRCEIKGGKCGIKSNSSREIICSHVHKPAIPRRA 250

Query: 248 RILRIICVVIILPSLMCVFGFGCFICFARWGYGIADS--RRNQAQHQQQVNPALE--TEP 307
           R    I V   +P  + VFG  CF+      Y    S  +R +     ++N A       
Sbjct: 251 RY--AIAVGAGIPGALIVFGLFCFV------YSKISSCIKRRRLVPTPEINNAQAHYLHS 310

Query: 308 PIRLSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKDTVRCIPECKHCFHVD 367
            + + GLD  TI+SY K++LGES+RLP  +  TC ICL EY  K+T+R IP+C+HCFH D
Sbjct: 311 SVIVMGLDGPTIESYPKIVLGESKRLPKVDDATCAICLSEYEPKETLRTIPQCQHCFHAD 370

Query: 368 CIDQWLRVNSSCPLCRNSP 373
           CID+WL++N +CP+CRNSP
Sbjct: 371 CIDEWLKLNGTCPVCRNSP 375

[Close]

BLAST of CmaCh00G002910 vs. TAIR 10
Match: AT1G28040.1 (RING/U-box superfamily protein )

HSP 1 Score: 218.4 bits (555), Expect = 9.9e-57
Identity = 133/313 (42.49%), Postives = 180/313 (57.51%), Query Frame = 0


Query: 72  SEQFLVRNIDYVAQQIQLYDPDVCLPKRLLLQGFNFDLSNSPFLLPFSKNFTFLSCQPQF 131
           S  FLV  I+Y  QQI + DP+ C+ KRLL     F+ S SPF   FS  +TFL+C  + 
Sbjct: 2   SGTFLVDEINYQKQQISISDPENCMVKRLL----TFNTSGSPFSYGFSFYYTFLTCPNEV 61

Query: 132 ATSRFPVLS--CLSNSTSSVVATSSMSYVRSMSKSNSCRIMANLTVP--VAYPD---EAN 191
               + ++S  CLSNSTSS  ATS++++ + +    SC+I+  L VP  V Y D   E  
Sbjct: 62  VIPVWSLMSIPCLSNSTSSFFATSNLTFSKLLPP--SCQIVKGLYVPVDVIYKDVITEEK 121

Query: 192 QFLTDHY-GDLLLTWNSPACSICETEGRLCGFKSNSGLGIACFNKYSTGENNGLRILRII 251
            F T  + G++LL W+SP C  CE E   CGFK+ + L +           + LR L I 
Sbjct: 122 GFSTVPWLGNVLLEWSSPNCRGCEKESLRCGFKNKASLEVKYLADPPDETKSRLRPLII- 181

Query: 252 CVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQHQQQVNPALETEPP---IRLSGL 311
                    +C+ G     C A      ++   NQ +    +     T+ P   +  +GL
Sbjct: 182 --------TLCIIGGITATCIAAIRIYNSERFVNQRRQNAAITARNTTQQPRGVVVTTGL 241

Query: 312 DESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKDTVRCIPECKHCFHVDCIDQWLR 371
           D+STI+SY+KV LGESRRLPG NG  CPICL EY +K+TVRC+PEC HCFHV CID+WL+
Sbjct: 242 DQSTIESYKKVELGESRRLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLK 299

Query: 372 VNSSCPLCRNSPS 374
           ++SSCP+CRNS S
Sbjct: 302 IHSSCPVCRNSRS 299

The following BLAST results are available for this feature:

BLAST of CmaCh00G002910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CH01	4.3e-81	47.00	Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A...	[more]
Q9SKK8	6.0e-75	43.26	RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2	[more]
P0CH02	2.4e-63	40.27	Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana OX=3702 GN=ATL21B...	[more]
P0CH03	2.1e-56	40.79	Putative RING-H2 finger protein ATL21C OS=Arabidopsis thaliana OX=3702 GN=ATL21C...	[more]
Q9C7E9	1.4e-55	42.49	RING-H2 finger protein ATL20 OS=Arabidopsis thaliana OX=3702 GN=ATL20 PE=2 SV=2	[more]

BLAST of CmaCh00G002910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46495.1	3.1e-82	47.00	RING/U-box superfamily protein	[more]
AT2G25410.1	4.3e-76	43.26	RING/U-box superfamily protein	[more]
AT2G46494.1	1.7e-64	40.27	RING/U-box superfamily protein	[more]
AT5G53110.1	1.7e-64	40.11	RING/U-box superfamily protein	[more]
AT1G28040.1	9.9e-57	42.49	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 327..368 e-value: 2.1E-5 score: 33.9
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 326..369 e-value: 2.5E-12 score: 46.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 327..369 score: 12.282736
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 290..374 e-value: 1.1E-19 score: 71.8
IPR025287	Wall-associated receptor kinase, galacturonan-binding domain	PFAM	PF13947	GUB_WAK_bind	coord: 24..91 e-value: 3.4E-14 score: 53.0
None	No IPR available	PANTHER	PTHR46279:SF2	RING-H2 FINGER PROTEIN ATL21A-RELATED	coord: 3..376
None	No IPR available	PANTHER	PTHR46279	RING/U-BOX SUPERFAMILY PROTEIN	coord: 3..376
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 320..372

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G002910.1	CmaCh00G002910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0030247	polysaccharide binding