CmaCh00G002700 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G002700
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	S-protein homolog
Location	Cma_Chr00: 21301938 .. 21302387 (-)
RNA-Seq Expression	CmaCh00G002700
Synteny	CmaCh00G002700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAAGAATATTGTCGTTTTCTTTCTTTTCACGGTGGCTTTAGTGGGGGCTGAGGTTCCAAGGGTCGCGTTACCACCACCAGGACCTTCTAGATATTACATTCATGTGGTTAACGGGCTAAGCAAACTTGGGTTGCTTGTGCATTGTCAGTCTAAAGACGATGACTTGGGGTATCATCGTTTGCTTAATCATGGAGATGATTACCAATGGAACTTCAAGGTTAACTTTTGGGGAACAACCCTCTATTGGTGCAAATTGGAGACGCCACATGCATATGTCTCTTTTGAAAGCTTTTGGCCTGAAACGCAGCACTTATGGCTCCGTGATAGGTGCAAACATGGAACTGTAGGAACTTGTATTTGGACGGCCAAAGATGATGGAATTTACTTGAGAAACTTTCTTGCTAATGTTGATGAATTGATACACAAGTGGATCTATAAAAGATAG

mRNA sequence

ATGATAAAGAATATTGTCGTTTTCTTTCTTTTCACGGTGGCTTTAGTGGGGGCTGAGGTTCCAAGGGTCGCGTTACCACCACCAGGACCTTCTAGATATTACATTCATGTGGTTAACGGGCTAAGCAAACTTGGGTTGCTTGTGCATTGTCAGTCTAAAGACGATGACTTGGGGTATCATCGTTTGCTTAATCATGGAGATGATTACCAATGGAACTTCAAGGTTAACTTTTGGGGAACAACCCTCTATTGGTGCAAATTGGAGACGCCACATGCATATGTCTCTTTTGAAAGCTTTTGGCCTGAAACGCAGCACTTATGGCTCCGTGATAGGTGCAAACATGGAACTGTAGGAACTTGTATTTGGACGGCCAAAGATGATGGAATTTACTTGAGAAACTTTCTTGCTAATGTTGATGAATTGATACACAAGTGGATCTATAAAAGATAG

Coding sequence (CDS)

ATGATAAAGAATATTGTCGTTTTCTTTCTTTTCACGGTGGCTTTAGTGGGGGCTGAGGTTCCAAGGGTCGCGTTACCACCACCAGGACCTTCTAGATATTACATTCATGTGGTTAACGGGCTAAGCAAACTTGGGTTGCTTGTGCATTGTCAGTCTAAAGACGATGACTTGGGGTATCATCGTTTGCTTAATCATGGAGATGATTACCAATGGAACTTCAAGGTTAACTTTTGGGGAACAACCCTCTATTGGTGCAAATTGGAGACGCCACATGCATATGTCTCTTTTGAAAGCTTTTGGCCTGAAACGCAGCACTTATGGCTCCGTGATAGGTGCAAACATGGAACTGTAGGAACTTGTATTTGGACGGCCAAAGATGATGGAATTTACTTGAGAAACTTTCTTGCTAATGTTGATGAATTGATACACAAGTGGATCTATAAAAGATAG

Protein sequence

MIKNIVVFFLFTVALVGAEVPRVALPPPGPSRYYIHVVNGLSKLGLLVHCQSKDDDLGYHRLLNHGDDYQWNFKVNFWGTTLYWCKLETPHAYVSFESFWPETQHLWLRDRCKHGTVGTCIWTAKDDGIYLRNFLANVDELIHKWIYKR

Homology

[Close]

BLAST of CmaCh00G002700 vs. ExPASy Swiss-Prot
Match: F4JLS0 (S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.1e-15
Identity = 52/152 (34.21%), Postives = 76/152 (50.00%), Query Frame = 0


Query: 2   IKNIVVFFLFTVA-------LVGAEVPRVALPPPGPSRYYIHVVNGLSK-LGLLVHCQSK 61
           IK  ++   F++A       LVG    R  + P   S + + VVNGL+    L +HC+SK
Sbjct: 4   IKQFLLAICFSLALTCQDHVLVGGTTTRDIIVPK-ISEWQVTVVNGLTTGETLFIHCKSK 63

Query: 62  DDDLGYHRLLNHGDDYQWNFKVNFWGTTLYWCKLETPHAYVSFESFWPETQHLWLRDRCK 121
           +DDLG    L   + + WNF  N   +T +WC +   + +++   FW +   + L  RC 
Sbjct: 64  EDDLGEIN-LKFRNRFSWNFGENMLHSTFFWCYMNKDNGHMNVNVFWDD---VILFHRCG 123

Query: 122 HGTVGTCIWTAKDDGIYLRNFLANVDELIHKW 146
                 CIWTAK DG+YL N  +  D L  KW
Sbjct: 124 W---KNCIWTAKTDGLYLWNSASGEDVLSRKW 147

[Close]

BLAST of CmaCh00G002700 vs. ExPASy Swiss-Prot
Match: Q2HQ46 (S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-14
Identity = 43/119 (36.13%), Postives = 63/119 (52.94%), Query Frame = 0


Query: 28  PGPSRYYIHVVNGLSK-LGLLVHCQSKDDDLGYHRLLNHGDDYQWNFKVNFWGTTLYWCK 87
           P  S + + V NGL+    L +HC+SK++DLG    L   D + WNF  N   +TL+WC 
Sbjct: 36  PKISEWQVTVANGLTTGETLFIHCKSKENDLGDIN-LKFLDRFSWNFGENMLHSTLFWCY 95

Query: 88  LETPHAYVSFESFWPETQHLWLRDRCKHGTVGTCIWTAKDDGIYLRNFLANVDELIHKW 146
           +     +++ + FW +   + L  RC       C+WTAK+DG+YL N     D L  KW
Sbjct: 96  MSKDDGHMNVKVFWDD---VILFHRCDW---KNCVWTAKNDGLYLWNSAIGEDVLSEKW 147

[Close]

BLAST of CmaCh00G002700 vs. ExPASy Swiss-Prot
Match: F2Q9V4 (S-protein homolog 6 OS=Arabidopsis thaliana OX=3702 GN=SPH6 PE=3 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 4.9e-12
Identity = 45/145 (31.03%), Postives = 69/145 (47.59%), Query Frame = 0


Query: 6   VVFFLFTVALVGAEVPR---VALPPPGP-SRYYIHVVNGLSKLGLLVHCQSKDDDLGYHR 65
           ++ F+  ++L+G E  +      P  GP +R  I+  N      L VHC+S+DDD G+H 
Sbjct: 3   IIIFIVLISLIGCETLQHDGKVFPMKGPLTRVVIYNDNDYL---LGVHCKSRDDDHGFH- 62

Query: 66  LLNHGDDYQWNFKVNFWGTTLYWCKLETPHAYVSFESFWPETQHLWLRDRCKHGTVGTCI 125
           +L  G  Y W F VNF  +TLY+C              +   +      RC++     C 
Sbjct: 63  ILQKGGLYGWMFYVNFMNSTLYFCGFSQEQVKKGVFDIYKAVRD---SSRCRN-----CT 122

Query: 126 WTAKDDGIYLRNFLANVDELIHKWI 147
           W AK+DGIY    +   + L +KW+
Sbjct: 123 WEAKEDGIYGYGEIPKKNPLFYKWL 135

[Close]

BLAST of CmaCh00G002700 vs. ExPASy Swiss-Prot
Match: Q9LW22 (S-protein homolog 21 OS=Arabidopsis thaliana OX=3702 GN=SPH21 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.6e-09
Identity = 33/94 (35.11%), Postives = 50/94 (53.19%), Query Frame = 0


Query: 38  VNGLSKLGLLVHCQSKDDDLGYHRLLNHGDDYQWNFKVNFWGTTLYWCKLETPHAYVSFE 97
           +N  +K  L VHC+SK++D+G  + L  G+   ++FK NFWGTT +WC L     Y  + 
Sbjct: 32  LNPKNKNILKVHCKSKNNDIGV-KYLKIGEVMSFSFKTNFWGTTEFWCNLYKGPDYKRYR 91

Query: 98  SFWP-ETQHLWLRDRCKHGTVGTCIWTAKDDGIY 131
                +   L+ +D   +       W A+DDGIY
Sbjct: 92  GITAYQAIGLFAKDGSSYN------WLARDDGIY 118

[Close]

BLAST of CmaCh00G002700 vs. ExPASy Swiss-Prot
Match: F4JLQ5 (S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-08
Identity = 35/116 (30.17%), Postives = 61/116 (52.59%), Query Frame = 0


Query: 31  SRYYIHVVNGL-SKLGLLVHCQSKDDDLGYHRLLNHGDDYQWNFKVNFWGTTLYWCKLET 90
           S+  + + N L ++L LL HC+SKDDDLG +R L  G+ + ++F   F+G TLY+C    
Sbjct: 46  SKRTVEINNDLGNQLTLLYHCKSKDDDLG-NRTLQPGESWSFSFGRQFFGRTLYFCSFSW 105

Query: 91  PHAYVSFESFWPETQHLWLRDRCKHGTVGTCIWTAKDDGIYLRNFLANVDELIHKW 146
           P+   SF+  + + +     ++C+      C+W  + +G    N      +L + W
Sbjct: 106 PNESHSFD-IYKDHRDSGGDNKCES---DRCVWKIRRNGPCRFNDETKQFDLCYPW 156

[Close]

BLAST of CmaCh00G002700 vs. TAIR 10
Match: AT4G16295.1 (S-protein homologue 1 )

HSP 1 Score: 82.0 bits (201), Expect = 4.4e-16
Identity = 52/152 (34.21%), Postives = 76/152 (50.00%), Query Frame = 0


Query: 2   IKNIVVFFLFTVA-------LVGAEVPRVALPPPGPSRYYIHVVNGLSK-LGLLVHCQSK 61
           IK  ++   F++A       LVG    R  + P   S + + VVNGL+    L +HC+SK
Sbjct: 4   IKQFLLAICFSLALTCQDHVLVGGTTTRDIIVPK-ISEWQVTVVNGLTTGETLFIHCKSK 63

Query: 62  DDDLGYHRLLNHGDDYQWNFKVNFWGTTLYWCKLETPHAYVSFESFWPETQHLWLRDRCK 121
           +DDLG    L   + + WNF  N   +T +WC +   + +++   FW +   + L  RC 
Sbjct: 64  EDDLGEIN-LKFRNRFSWNFGENMLHSTFFWCYMNKDNGHMNVNVFWDD---VILFHRCG 123

Query: 122 HGTVGTCIWTAKDDGIYLRNFLANVDELIHKW 146
                 CIWTAK DG+YL N  +  D L  KW
Sbjct: 124 W---KNCIWTAKTDGLYLWNSASGEDVLSRKW 147

[Close]

BLAST of CmaCh00G002700 vs. TAIR 10
Match: AT4G29035.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 81.3 bits (199), Expect = 7.4e-16
Identity = 43/119 (36.13%), Postives = 63/119 (52.94%), Query Frame = 0


Query: 28  PGPSRYYIHVVNGLSK-LGLLVHCQSKDDDLGYHRLLNHGDDYQWNFKVNFWGTTLYWCK 87
           P  S + + V NGL+    L +HC+SK++DLG    L   D + WNF  N   +TL+WC 
Sbjct: 36  PKISEWQVTVANGLTTGETLFIHCKSKENDLGDIN-LKFLDRFSWNFGENMLHSTLFWCY 95

Query: 88  LETPHAYVSFESFWPETQHLWLRDRCKHGTVGTCIWTAKDDGIYLRNFLANVDELIHKW 146
           +     +++ + FW +   + L  RC       C+WTAK+DG+YL N     D L  KW
Sbjct: 96  MSKDDGHMNVKVFWDD---VILFHRCDW---KNCVWTAKNDGLYLWNSAIGEDVLSEKW 147

[Close]

BLAST of CmaCh00G002700 vs. TAIR 10
Match: AT3G26880.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 62.0 bits (149), Expect = 4.7e-10
Identity = 33/94 (35.11%), Postives = 50/94 (53.19%), Query Frame = 0


Query: 38  VNGLSKLGLLVHCQSKDDDLGYHRLLNHGDDYQWNFKVNFWGTTLYWCKLETPHAYVSFE 97
           +N  +K  L VHC+SK++D+G  + L  G+   ++FK NFWGTT +WC L     Y  + 
Sbjct: 32  LNPKNKNILKVHCKSKNNDIGV-KYLKIGEVMSFSFKTNFWGTTEFWCNLYKGPDYKRYR 91

Query: 98  SFWP-ETQHLWLRDRCKHGTVGTCIWTAKDDGIY 131
                +   L+ +D   +       W A+DDGIY
Sbjct: 92  GITAYQAIGLFAKDGSSYN------WLARDDGIY 118

[Close]

BLAST of CmaCh00G002700 vs. TAIR 10
Match: AT5G04350.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 61.6 bits (148), Expect = 6.1e-10
Identity = 35/95 (36.84%), Postives = 52/95 (54.74%), Query Frame = 0


Query: 42  SKLGLLVHCQSKDDDLGYHRLLNHGDDYQWNFKVNFWGTTLYWCKLET-PH-----AYVS 101
           SKL L VHC+SKDDDLG H +L  G DY++ F  N W TT + C+++  P+      +V+
Sbjct: 38  SKL-LKVHCRSKDDDLGEH-ILKIGQDYEFTFGDNIWQTTSFSCQMDQGPNFKHHLDFVA 97

Query: 102 FESFWPETQHLWLRDRCKHGTVGTCIWTAKDDGIY 131
           +E+ W +                +C W  ++DGIY
Sbjct: 98  YETSWSKALE------------ASCKWIGREDGIY 118

[Close]

BLAST of CmaCh00G002700 vs. TAIR 10
Match: AT5G06020.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-09
Identity = 32/99 (32.32%), Postives = 46/99 (46.46%), Query Frame = 0


Query: 48  VHCQSKDDDLGYHRLLNHGDDYQWNFKVNFWGTTLYWCKLETPHAYVSFESFWPETQHLW 107
           +HC+SKDDDLG+H +   G+ Y W F VNF  +TLY+C                  +  +
Sbjct: 61  IHCKSKDDDLGFH-IHKEGELYGWKFHVNFQNSTLYFCGFSQGQDNKGVFDIDRAERDFY 120

Query: 108 LRDRCKHGTVGTCIWTAKDDGIYLRNFLANVDELIHKWI 147
              RC++     C W AK D +Y  + L        KW+
Sbjct: 121 ---RCRN-----CTWNAKKDSLYGYSNLPQTVTWFFKWL 150

The following BLAST results are available for this feature:

BLAST of CmaCh00G002700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JLS0	6.1e-15	34.21	S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1	[more]
Q2HQ46	1.0e-14	36.13	S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1	[more]
F2Q9V4	4.9e-12	31.03	S-protein homolog 6 OS=Arabidopsis thaliana OX=3702 GN=SPH6 PE=3 SV=2	[more]
Q9LW22	6.6e-09	35.11	S-protein homolog 21 OS=Arabidopsis thaliana OX=3702 GN=SPH21 PE=3 SV=1	[more]
F4JLQ5	1.5e-08	30.17	S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1	[more]

BLAST of CmaCh00G002700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16295.1	4.4e-16	34.21	S-protein homologue 1	[more]
AT4G29035.1	7.4e-16	36.13	Plant self-incompatibility protein S1 family	[more]
AT3G26880.1	4.7e-10	35.11	Plant self-incompatibility protein S1 family	[more]
AT5G04350.1	6.1e-10	36.84	Plant self-incompatibility protein S1 family	[more]
AT5G06020.1	1.4e-09	32.32	Plant self-incompatibility protein S1 family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 35..145 e-value: 9.9E-23 score: 80.7
IPR010264	Plant self-incompatibility S1	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 30..147
None	No IPR available	PANTHER	PTHR31232:SF99	SUBFAMILY NOT NAMED	coord: 30..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G002700.1	CmaCh00G002700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0060320	rejection of self pollen
cellular_component	GO:0005576	extracellular region