CmaCh00G002560 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G002560
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	polygalacturonase-like
Location	Cma_Chr00: 18377128 .. 18377655 (+)
RNA-Seq Expression	CmaCh00G002560
Synteny	CmaCh00G002560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTTTCCATTGCTTGCGGTGTTATTGATGGGCAAGGAACTACCTTATGAGATTGTAAACGCTCAGGGAAGAGTTGCCCTAATGGAGCCTGGGCAAGGAAAATTTGAGTTGACTAGATAGAGAACAAAAATTGAAATTTTTTTCTTTAGCTAAATTTGAAAGAAAATGGAATCGATTAGCTATATTAATTTAAATTTTCACTAATTCTTGTGTTTGATTATTTTGAATCGACAGAGTCTTCAAATCAACGATACAAAAAACATAAACATCTGGGGTTTATCTTCAATTAGCAGTCAAATGTTCAACATTGTGGTGGATGGGTGCCAAAACGTGCATATGACTGGAGTGATGTCTCGTCTGCAGGCGATAGTCCAAACACTGATGGCACATGTGCAACAATCATCAAATGTGAGCATCCTCAACTCGAACATCGACACTGGTGACGACTGCTTCTCAATTGGTCCAGGGACTTCCAACTTGTGGATGGAAAATATTACATGTGAACCTGGACATGGCATCAGGTAG

mRNA sequence

ATGGGCTTTCCATTGCTTGCGGTGTTATTGATGGGCAAGGAACTACCTTATGAGATTAGTCTTCAAATCAACGATACAAAAAACATAAACATCTGGGGTTTATCTTCAATTAGCAGTCAAATGTTCAACATTGTGGTGGATGGGTGCCAAAACGTGCATATGACTGGAGTGATGTCTCGTCTGCAGGCGATAGTCCAAACACTGATGGCACATGTGCAACAATCATCAAATGTGAGCATCCTCAACTCGAACATCGACACTGGTGACGACTGCTTCTCAATTGGTCCAGGGACTTCCAACTTGTGGATGGAAAATATTACATGTGAACCTGGACATGGCATCAGGTAG

Coding sequence (CDS)

ATGGGCTTTCCATTGCTTGCGGTGTTATTGATGGGCAAGGAACTACCTTATGAGATTAGTCTTCAAATCAACGATACAAAAAACATAAACATCTGGGGTTTATCTTCAATTAGCAGTCAAATGTTCAACATTGTGGTGGATGGGTGCCAAAACGTGCATATGACTGGAGTGATGTCTCGTCTGCAGGCGATAGTCCAAACACTGATGGCACATGTGCAACAATCATCAAATGTGAGCATCCTCAACTCGAACATCGACACTGGTGACGACTGCTTCTCAATTGGTCCAGGGACTTCCAACTTGTGGATGGAAAATATTACATGTGAACCTGGACATGGCATCAGGTAG

Protein sequence

MGFPLLAVLLMGKELPYEISLQINDTKNINIWGLSSISSQMFNIVVDGCQNVHMTGVMSRLQAIVQTLMAHVQQSSNVSILNSNIDTGDDCFSIGPGTSNLWMENITCEPGHGIR

Homology

[Close]

BLAST of CmaCh00G002560 vs. ExPASy Swiss-Prot
Match: P48979 (Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.2e-22
Identity = 55/96 (57.29%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 20  SLQINDTKNINIWGLSSISSQMFNIVVDGCQNVHMTGV-MSRLQAIVQTLMAHVQQSSNV 79
           +L  +D+ NI + GL+S++SQMF+IV++  QNV M GV +SR      T   HVQ SS V
Sbjct: 149 TLGFSDSNNIVVSGLASLNSQMFHIVINDFQNVQMQGVRVSRSGNSPNTDGIHVQMSSGV 208

Query: 80  SILNSNIDTGDDCFSIGPGTSNLWMENITCEPGHGI 115
           +ILNS I TGDDC SIGPGTSNLW+E + C PGHGI
Sbjct: 209 TILNSKIATGDDCVSIGPGTSNLWIEGVACGPGHGI 244

[Close]

BLAST of CmaCh00G002560 vs. ExPASy Swiss-Prot
Match: O22818 (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.6e-17
Identity = 47/96 (48.96%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 20  SLQINDTKNINIWGLSSISSQMFNIVVDGCQNVHMTGV-MSRLQAIVQTLMAHVQQSSNV 79
           SL  + + NI I GL+SI+SQ F+IV+D   NV++ GV +S  +    T   HV+ S +V
Sbjct: 155 SLVFSGSNNIKISGLTSINSQKFHIVIDNSNNVNIDGVKVSADENSPNTDGIHVESSHSV 214

Query: 80  SILNSNIDTGDDCFSIGPGTSNLWMENITCEPGHGI 115
            I NS I TGDDC SIGPG++N++++ I C PGHGI
Sbjct: 215 HITNSRIGTGDDCISIGPGSTNVFIQTIRCGPGHGI 250

[Close]

BLAST of CmaCh00G002560 vs. ExPASy Swiss-Prot
Match: W8P8Q3 (Probable galacturan 1,4-alpha-galacturonidase SALK6 OS=Kali turgidum OX=151250 PE=1 SV=3)

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-13
Identity = 40/105 (38.10%), Postives = 64/105 (60.95%), Query Frame = 0


Query: 11  MGKELPYEISLQINDTKNINIWGLSSISSQMFNIVVDGCQNVHMTGV-MSRLQAIVQTLM 70
           M   LPY  + + N   N  I G+ S++S+++++ V GC+N+ +TG+ +   +  + T  
Sbjct: 142 MCNSLPY--NFRFNTLTNAQISGIKSLNSKLYHMGVMGCKNITLTGLTIDAPKDSLNTDG 201

Query: 71  AHVQQSSNVSILNSNIDTGDDCFSIGPGTSNLWMENITCEPGHGI 115
            H+ +S+ V   NS I TGDDC S+G G  ++ +E ITC PGHGI
Sbjct: 202 MHIGRSNGVHATNSKIGTGDDCISMGDGAVDVHVEGITCGPGHGI 244

[Close]

BLAST of CmaCh00G002560 vs. ExPASy Swiss-Prot
Match: P49062 (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.9e-12
Identity = 36/96 (37.50%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 20  SLQINDTKNINIWGLSSISSQMFNIVVDGCQNVHMTGVMSRLQA-IVQTLMAHVQQSSNV 79
           SL+  + KN+ I G+SS++++ F++ +   +NV++  +     A    T   H+  + NV
Sbjct: 171 SLKFRNMKNVEINGISSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTDGIHLSNADNV 230

Query: 80  SILNSNIDTGDDCFSIGPGTSNLWMENITCEPGHGI 115
           SIL+S I TGDDC S+G G++N+ +E + C PGHG+
Sbjct: 231 SILDSTIATGDDCVSVGRGSNNVTVERVICGPGHGL 266

[Close]

BLAST of CmaCh00G002560 vs. ExPASy Swiss-Prot
Match: P49063 (Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana OX=3702 GN=At3g07850 PE=2 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-11
Identity = 35/104 (33.65%), Postives = 62/104 (59.62%), Query Frame = 0


Query: 12  GKELPYEISLQINDTKNINIWGLSSISSQMFNIVVDGCQNVHMTGV-MSRLQAIVQTLMA 71
           GK     I+++     N  I  ++S +S++F++ +  C+N+ ++ + +      + T   
Sbjct: 183 GKCNSLPINIRFTGLTNSKINSITSTNSKLFHMNILNCKNITLSDIGIDAPPESLNTDGI 242

Query: 72  HVQQSSNVSILNSNIDTGDDCFSIGPGTSNLWMENITCEPGHGI 115
           H+ +S+ V+++ + I TGDDC SIG GT NL +EN+ C PGHGI
Sbjct: 243 HIGRSNGVNLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGI 286

[Close]

BLAST of CmaCh00G002560 vs. ExPASy TrEMBL
Match: A0A6J1IEE8 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111472461 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.1e-34
Identity = 78/96 (81.25%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 20  SLQINDTKNINIWGLSSISSQMFNIVVDGCQNVHMTGV-MSRLQAIVQTLMAHVQQSSNV 79
           SLQINDTKN+NIWGLSSI+SQMFNIVVDGCQNVHMTGV +S       T   HVQQSSNV
Sbjct: 148 SLQINDTKNVNIWGLSSINSQMFNIVVDGCQNVHMTGVSVSSAGDSPNTDGIHVQQSSNV 207

Query: 80  SILNSNIDTGDDCFSIGPGTSNLWMENITCEPGHGI 115
           +ILNSNI TGDDC SIGPGTSNLWMENITC PGHGI
Sbjct: 208 TILNSNIGTGDDCISIGPGTSNLWMENITCGPGHGI 243

[Close]

BLAST of CmaCh00G002560 vs. ExPASy TrEMBL
Match: A0A6J1IDZ8 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111474610 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 6.2e-34
Identity = 77/96 (80.21%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 20  SLQINDTKNINIWGLSSISSQMFNIVVDGCQNVHMTGV-MSRLQAIVQTLMAHVQQSSNV 79
           SLQINDTKN+NIWGLSSI+SQMFNIVVDGCQNVHMTGV +S       T   HVQQSSNV
Sbjct: 148 SLQINDTKNVNIWGLSSINSQMFNIVVDGCQNVHMTGVSVSSAGDSPNTDGIHVQQSSNV 207

Query: 80  SILNSNIDTGDDCFSIGPGTSNLWMENITCEPGHGI 115
           +ILNSNI TGDDC SIGPGTSNLW+ENITC PGHGI
Sbjct: 208 TILNSNIGTGDDCISIGPGTSNLWIENITCGPGHGI 243

[Close]

BLAST of CmaCh00G002560 vs. ExPASy TrEMBL
Match: A0A6J1F386 (polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111439563 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.8e-33
Identity = 76/96 (79.17%), Postives = 80/96 (83.33%), Query Frame = 0


Query: 20  SLQINDTKNINIWGLSSISSQMFNIVVDGCQNVHMTGV-MSRLQAIVQTLMAHVQQSSNV 79
           SLQINDTKN+NIW LSSI+SQMFNIVV GCQNVHMTGV +S       T   HVQQSSNV
Sbjct: 148 SLQINDTKNVNIWSLSSINSQMFNIVVHGCQNVHMTGVSVSSAGDSPNTDGIHVQQSSNV 207

Query: 80  SILNSNIDTGDDCFSIGPGTSNLWMENITCEPGHGI 115
           +ILNSNI TGDDC SIGPGTSNLWMENITC PGHGI
Sbjct: 208 TILNSNIGTGDDCISIGPGTSNLWMENITCGPGHGI 243

[Close]

BLAST of CmaCh00G002560 vs. ExPASy TrEMBL
Match: A0A6J1IIL8 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111473551 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 7.6e-32
Identity = 79/128 (61.72%), Postives = 95/128 (74.22%), Query Frame = 0


Query: 1   MGFPLLAVLLMGKELPY------------EISLQINDTKNINIWGLSSISSQMFNIVVDG 60
           MG+PLLA+LLMGKELPY            E  LQIND KN+NI GLSSI+SQ+FNIV++ 
Sbjct: 1   MGYPLLAILLMGKELPYGIVNTQGRVAPLEPGLQINDGKNLNINGLSSINSQLFNIVMNR 60

Query: 61  CQNVHMT--GVMSRLQAIVQTLMAHVQQSSNVSILNSNIDTGDDCFSIGPGTSNLWMENI 115
           CQNVHMT   V++   +   T   HV+QSS+V+ILNSNI  GDDC SIGPGTSN+W+E+I
Sbjct: 61  CQNVHMTRVNVLAACDS-PNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESI 120

[Close]

BLAST of CmaCh00G002560 vs. ExPASy TrEMBL
Match: A0A6J1I843 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111471802 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.6e-27
Identity = 70/105 (66.67%), Postives = 78/105 (74.29%), Query Frame = 0


Query: 12  GKELPY-EISLQINDTKNINIWGLSSISSQMFNIVVDGCQNVHMTGV-MSRLQAIVQTLM 71
           GK  P    SLQIND +N+NI GLSSI+SQ FNIVV GCQNVHMT V +S       T  
Sbjct: 151 GKSCPVGATSLQINDAQNVNINGLSSINSQKFNIVVHGCQNVHMTRVNVSAADDSPNTDG 210

Query: 72  AHVQQSSNVSILNSNIDTGDDCFSIGPGTSNLWMENITCEPGHGI 115
            HVQQSS+V+ILNS+I  GDDC SI PGTSNLWME+ITC PGHGI
Sbjct: 211 IHVQQSSDVTILNSSISNGDDCISISPGTSNLWMESITCGPGHGI 255

[Close]

BLAST of CmaCh00G002560 vs. NCBI nr
Match: XP_022973868.1 (polygalacturonase-like [Cucurbita maxima])

HSP 1 Score: 154.8 bits (390), Expect = 4.4e-34
Identity = 78/96 (81.25%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 20  SLQINDTKNINIWGLSSISSQMFNIVVDGCQNVHMTGV-MSRLQAIVQTLMAHVQQSSNV 79
           SLQINDTKN+NIWGLSSI+SQMFNIVVDGCQNVHMTGV +S       T   HVQQSSNV
Sbjct: 148 SLQINDTKNVNIWGLSSINSQMFNIVVDGCQNVHMTGVSVSSAGDSPNTDGIHVQQSSNV 207

Query: 80  SILNSNIDTGDDCFSIGPGTSNLWMENITCEPGHGI 115
           +ILNSNI TGDDC SIGPGTSNLWMENITC PGHGI
Sbjct: 208 TILNSNIGTGDDCISIGPGTSNLWMENITCGPGHGI 243

[Close]

BLAST of CmaCh00G002560 vs. NCBI nr
Match: XP_022975376.1 (polygalacturonase-like [Cucurbita maxima])

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-33
Identity = 77/96 (80.21%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 20  SLQINDTKNINIWGLSSISSQMFNIVVDGCQNVHMTGV-MSRLQAIVQTLMAHVQQSSNV 79
           SLQINDTKN+NIWGLSSI+SQMFNIVVDGCQNVHMTGV +S       T   HVQQSSNV
Sbjct: 148 SLQINDTKNVNIWGLSSINSQMFNIVVDGCQNVHMTGVSVSSAGDSPNTDGIHVQQSSNV 207

Query: 80  SILNSNIDTGDDCFSIGPGTSNLWMENITCEPGHGI 115
           +ILNSNI TGDDC SIGPGTSNLW+ENITC PGHGI
Sbjct: 208 TILNSNIGTGDDCISIGPGTSNLWIENITCGPGHGI 243

[Close]

BLAST of CmaCh00G002560 vs. NCBI nr
Match: XP_022932948.1 (polygalacturonase-like [Cucurbita moschata])

HSP 1 Score: 149.8 bits (377), Expect = 1.4e-32
Identity = 76/96 (79.17%), Postives = 80/96 (83.33%), Query Frame = 0


Query: 20  SLQINDTKNINIWGLSSISSQMFNIVVDGCQNVHMTGV-MSRLQAIVQTLMAHVQQSSNV 79
           SLQINDTKN+NIW LSSI+SQMFNIVV GCQNVHMTGV +S       T   HVQQSSNV
Sbjct: 148 SLQINDTKNVNIWSLSSINSQMFNIVVHGCQNVHMTGVSVSSAGDSPNTDGIHVQQSSNV 207

Query: 80  SILNSNIDTGDDCFSIGPGTSNLWMENITCEPGHGI 115
           +ILNSNI TGDDC SIGPGTSNLWMENITC PGHGI
Sbjct: 208 TILNSNIGTGDDCISIGPGTSNLWMENITCGPGHGI 243

[Close]

BLAST of CmaCh00G002560 vs. NCBI nr
Match: XP_022974794.1 (polygalacturonase-like [Cucurbita maxima])

HSP 1 Score: 146.4 bits (368), Expect = 1.6e-31
Identity = 79/128 (61.72%), Postives = 95/128 (74.22%), Query Frame = 0


Query: 1   MGFPLLAVLLMGKELPY------------EISLQINDTKNINIWGLSSISSQMFNIVVDG 60
           MG+PLLA+LLMGKELPY            E  LQIND KN+NI GLSSI+SQ+FNIV++ 
Sbjct: 1   MGYPLLAILLMGKELPYGIVNTQGRVAPLEPGLQINDGKNLNINGLSSINSQLFNIVMNR 60

Query: 61  CQNVHMT--GVMSRLQAIVQTLMAHVQQSSNVSILNSNIDTGDDCFSIGPGTSNLWMENI 115
           CQNVHMT   V++   +   T   HV+QSS+V+ILNSNI  GDDC SIGPGTSN+W+E+I
Sbjct: 61  CQNVHMTRVNVLAACDS-PNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESI 120

[Close]

BLAST of CmaCh00G002560 vs. NCBI nr
Match: XP_023522647.1 (polygalacturonase-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.6 bits (353), Expect = 8.6e-30
Identity = 73/96 (76.04%), Postives = 80/96 (83.33%), Query Frame = 0


Query: 20  SLQINDTKNINIWGLSSISSQMFNIVVDGCQNVHMTGV-MSRLQAIVQTLMAHVQQSSNV 79
           SLQIND+KN+NI GLSSI+SQMFNIVVDGCQN+HMTGV +S       T   HVQQSSNV
Sbjct: 148 SLQINDSKNVNITGLSSINSQMFNIVVDGCQNMHMTGVNVSSAGDGPNTDGIHVQQSSNV 207

Query: 80  SILNSNIDTGDDCFSIGPGTSNLWMENITCEPGHGI 115
           +ILNS+I TGDDC SIG GTSNLWMENITC PGHGI
Sbjct: 208 TILNSSIGTGDDCISIGLGTSNLWMENITCGPGHGI 243

[Close]

BLAST of CmaCh00G002560 vs. TAIR 10
Match: AT3G59850.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 104.0 bits (258), Expect = 8.3e-23
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 0


Query: 12  GKELPY-EISLQINDTKNINIWGLSSISSQMFNIVVDGCQNVHMTGV-MSRLQAIVQTLM 71
           GK  P    S+    ++N+ I GL+S++SQMF++ ++GC NV + GV +S       T  
Sbjct: 135 GKNCPSGATSIGFQSSRNVVISGLTSLNSQMFHVAINGCSNVKLDGVKVSADGNSPNTDG 194

Query: 72  AHVQQSSNVSILNSNIDTGDDCFSIGPGTSNLWMENITCEPGHGI 115
            HVQ SS VSILNS I TGDDC SIGPGT+ LW+EN+ C PGHGI
Sbjct: 195 IHVQSSSTVSILNSKISTGDDCVSIGPGTNGLWIENVACGPGHGI 239

[Close]

BLAST of CmaCh00G002560 vs. TAIR 10
Match: AT2G43870.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 99.8 bits (247), Expect = 1.6e-21
Identity = 50/105 (47.62%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 12  GKELPY-EISLQINDTKNINIWGLSSISSQMFNIVVDGCQNVHMTGV-MSRLQAIVQTLM 71
           GK  P    ++    + N+ + GL+S++SQMF++V++GC NV + GV +        T  
Sbjct: 133 GKNCPSGATTIGFQSSSNVVVSGLTSLNSQMFHVVINGCNNVKLQGVKVLAAGNSPNTDG 192

Query: 72  AHVQQSSNVSILNSNIDTGDDCFSIGPGTSNLWMENITCEPGHGI 115
            HVQ SS+VSI N+ I TGDDC SIGPGT+ LW+EN+ C PGHGI
Sbjct: 193 IHVQSSSSVSIFNTKISTGDDCVSIGPGTNGLWIENVACGPGHGI 237

[Close]

BLAST of CmaCh00G002560 vs. TAIR 10
Match: AT2G43860.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 88.2 bits (217), Expect = 4.7e-18
Identity = 47/96 (48.96%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 20  SLQINDTKNINIWGLSSISSQMFNIVVDGCQNVHMTGV-MSRLQAIVQTLMAHVQQSSNV 79
           SL  + + NI I GL+SI+SQ F+IV+D   NV++ GV +S  +    T   HV+ S +V
Sbjct: 155 SLVFSGSNNIKISGLTSINSQKFHIVIDNSNNVNIDGVKVSADENSPNTDGIHVESSHSV 214

Query: 80  SILNSNIDTGDDCFSIGPGTSNLWMENITCEPGHGI 115
            I NS I TGDDC SIGPG++N++++ I C PGHGI
Sbjct: 215 HITNSRIGTGDDCISIGPGSTNVFIQTIRCGPGHGI 250

[Close]

BLAST of CmaCh00G002560 vs. TAIR 10
Match: AT1G65570.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 84.3 bits (207), Expect = 6.8e-17
Identity = 40/96 (41.67%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 20  SLQINDTKNINIWGLSSISSQMFNIVVDGCQNVHMTGV-MSRLQAIVQTLMAHVQQSSNV 79
           +L+  D+ N+ I G+ S++SQ+F+I ++ C+N+ +  V +        T   H+Q S+++
Sbjct: 153 TLRFMDSNNVKIKGVLSLNSQLFHIAINRCRNIKIEDVRIIAPDESPNTDGIHIQLSTDI 212

Query: 80  SILNSNIDTGDDCFSIGPGTSNLWMENITCEPGHGI 115
            + N++I TGDDC SIGPGT NL ++ ITC PGHGI
Sbjct: 213 EVRNASIKTGDDCISIGPGTKNLMVDGITCGPGHGI 248

[Close]

BLAST of CmaCh00G002560 vs. TAIR 10
Match: AT2G43890.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-14
Identity = 45/107 (42.06%), Postives = 63/107 (58.88%), Query Frame = 0


Query: 12  GKELPYEI-SLQINDTKNINIWGLSSISSQMFNIVVDGCQNVHMTGVMSRLQAIVQ---T 71
           GK  P    S+  N   ++ + GL+SI+SQ  ++V++ C NV +  V  +L A  Q   T
Sbjct: 139 GKSCPVGARSMTFNWANDVVVSGLTSINSQTTHLVINSCNNVIVRKV--KLVAPDQSPNT 198

Query: 72  LMAHVQQSSNVSILNSNIDTGDDCFSIGPGTSNLWMENITCEPGHGI 115
              HVQ S+ V++ +    TGDDC SIGPGT NL+M  + C PGHGI
Sbjct: 199 DGLHVQGSAGVTVTDGTFHTGDDCISIGPGTRNLYMSKLNCGPGHGI 243

The following BLAST results are available for this feature:

BLAST of CmaCh00G002560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P48979	5.2e-22	57.29	Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1	[more]
O22818	6.6e-17	48.96	Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g4386...	[more]
W8P8Q3	2.6e-13	38.10	Probable galacturan 1,4-alpha-galacturonidase SALK6 OS=Kali turgidum OX=151250 P...	[more]
P49062	4.9e-12	37.50	Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 ...	[more]
P49063	2.4e-11	33.65	Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana OX=3702 GN=At3g07850 ...	[more]

BLAST of CmaCh00G002560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IEE8	2.1e-34	81.25	polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111472461 PE=3 SV=1	[more]
A0A6J1IDZ8	6.2e-34	80.21	polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111474610 PE=3 SV=1	[more]
A0A6J1F386	6.8e-33	79.17	polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111439563 PE=3 SV=1	[more]
A0A6J1IIL8	7.6e-32	61.72	polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111473551 PE=3 SV=1	[more]
A0A6J1I843	5.6e-27	66.67	polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111471802 PE=3 SV=1	[more]

BLAST of CmaCh00G002560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022973868.1	4.4e-34	81.25	polygalacturonase-like [Cucurbita maxima]	[more]
XP_022975376.1	1.3e-33	80.21	polygalacturonase-like [Cucurbita maxima]	[more]
XP_022932948.1	1.4e-32	79.17	polygalacturonase-like [Cucurbita moschata]	[more]
XP_022974794.1	1.6e-31	61.72	polygalacturonase-like [Cucurbita maxima]	[more]
XP_023522647.1	8.6e-30	76.04	polygalacturonase-like, partial [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh00G002560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G59850.1	8.3e-23	51.43	Pectin lyase-like superfamily protein	[more]
AT2G43870.1	1.6e-21	47.62	Pectin lyase-like superfamily protein	[more]
AT2G43860.1	4.7e-18	48.96	Pectin lyase-like superfamily protein	[more]
AT1G65570.1	6.8e-17	41.67	Pectin lyase-like superfamily protein	[more]
AT2G43890.1	1.4e-14	42.06	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 19..114 e-value: 3.1E-20 score: 72.5
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 11..115 e-value: 1.4E-23 score: 85.3
None	No IPR available	PANTHER	PTHR31375:SF246	PECTIN LYASE-LIKE SUPERFAMILY PROTEIN	coord: 18..114
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 18..114
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 19..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G002560.1	CmaCh00G002560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006820	anion transport
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0004650	polygalacturonase activity