CmaCh00G002560 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCTTTCCATTGCTTGCGGTGTTATTGATGGGCAAGGAACTACCTTATGAGATTGTAAACGCTCAGGGAAGAGTTGCCCTAATGGAGCCTGGGCAAGGAAAATTTGAGTTGACTAGATAGAGAACAAAAATTGAAATTTTTTTCTTTAGCTAAATTTGAAAGAAAATGGAATCGATTAGCTATATTAATTTAAATTTTCACTAATTCTTGTGTTTGATTATTTTGAATCGACAGAGTCTTCAAATCAACGATACAAAAAACATAAACATCTGGGGTTTATCTTCAATTAGCAGTCAAATGTTCAACATTGTGGTGGATGGGTGCCAAAACGTGCATATGACTGGAGTGATGTCTCGTCTGCAGGCGATAGTCCAAACACTGATGGCACATGTGCAACAATCATCAAATGTGAGCATCCTCAACTCGAACATCGACACTGGTGACGACTGCTTCTCAATTGGTCCAGGGACTTCCAACTTGTGGATGGAAAATATTACATGTGAACCTGGACATGGCATCAGGTAG ATGGGCTTTCCATTGCTTGCGGTGTTATTGATGGGCAAGGAACTACCTTATGAGATTAGTCTTCAAATCAACGATACAAAAAACATAAACATCTGGGGTTTATCTTCAATTAGCAGTCAAATGTTCAACATTGTGGTGGATGGGTGCCAAAACGTGCATATGACTGGAGTGATGTCTCGTCTGCAGGCGATAGTCCAAACACTGATGGCACATGTGCAACAATCATCAAATGTGAGCATCCTCAACTCGAACATCGACACTGGTGACGACTGCTTCTCAATTGGTCCAGGGACTTCCAACTTGTGGATGGAAAATATTACATGTGAACCTGGACATGGCATCAGGTAG ATGGGCTTTCCATTGCTTGCGGTGTTATTGATGGGCAAGGAACTACCTTATGAGATTAGTCTTCAAATCAACGATACAAAAAACATAAACATCTGGGGTTTATCTTCAATTAGCAGTCAAATGTTCAACATTGTGGTGGATGGGTGCCAAAACGTGCATATGACTGGAGTGATGTCTCGTCTGCAGGCGATAGTCCAAACACTGATGGCACATGTGCAACAATCATCAAATGTGAGCATCCTCAACTCGAACATCGACACTGGTGACGACTGCTTCTCAATTGGTCCAGGGACTTCCAACTTGTGGATGGAAAATATTACATGTGAACCTGGACATGGCATCAGGTAG MGFPLLAVLLMGKELPYEISLQINDTKNINIWGLSSISSQMFNIVVDGCQNVHMTGVMSRLQAIVQTLMAHVQQSSNVSILNSNIDTGDDCFSIGPGTSNLWMENITCEPGHGIR Homology
BLAST of CmaCh00G002560 vs. ExPASy Swiss-Prot
Match: P48979 (Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 5.2e-22 Identity = 55/96 (57.29%), Postives = 69/96 (71.88%), Query Frame = 0
BLAST of CmaCh00G002560 vs. ExPASy Swiss-Prot
Match: O22818 (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g43860 PE=2 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 6.6e-17 Identity = 47/96 (48.96%), Postives = 65/96 (67.71%), Query Frame = 0
BLAST of CmaCh00G002560 vs. ExPASy Swiss-Prot
Match: W8P8Q3 (Probable galacturan 1,4-alpha-galacturonidase SALK6 OS=Kali turgidum OX=151250 PE=1 SV=3) HSP 1 Score: 76.3 bits (186), Expect = 2.6e-13 Identity = 40/105 (38.10%), Postives = 64/105 (60.95%), Query Frame = 0
BLAST of CmaCh00G002560 vs. ExPASy Swiss-Prot
Match: P49062 (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 4.9e-12 Identity = 36/96 (37.50%), Postives = 61/96 (63.54%), Query Frame = 0
BLAST of CmaCh00G002560 vs. ExPASy Swiss-Prot
Match: P49063 (Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana OX=3702 GN=At3g07850 PE=2 SV=2) HSP 1 Score: 69.7 bits (169), Expect = 2.4e-11 Identity = 35/104 (33.65%), Postives = 62/104 (59.62%), Query Frame = 0
BLAST of CmaCh00G002560 vs. ExPASy TrEMBL
Match: A0A6J1IEE8 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111472461 PE=3 SV=1) HSP 1 Score: 154.8 bits (390), Expect = 2.1e-34 Identity = 78/96 (81.25%), Postives = 82/96 (85.42%), Query Frame = 0
BLAST of CmaCh00G002560 vs. ExPASy TrEMBL
Match: A0A6J1IDZ8 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111474610 PE=3 SV=1) HSP 1 Score: 153.3 bits (386), Expect = 6.2e-34 Identity = 77/96 (80.21%), Postives = 82/96 (85.42%), Query Frame = 0
BLAST of CmaCh00G002560 vs. ExPASy TrEMBL
Match: A0A6J1F386 (polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111439563 PE=3 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 6.8e-33 Identity = 76/96 (79.17%), Postives = 80/96 (83.33%), Query Frame = 0
BLAST of CmaCh00G002560 vs. ExPASy TrEMBL
Match: A0A6J1IIL8 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111473551 PE=3 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 7.6e-32 Identity = 79/128 (61.72%), Postives = 95/128 (74.22%), Query Frame = 0
BLAST of CmaCh00G002560 vs. ExPASy TrEMBL
Match: A0A6J1I843 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111471802 PE=3 SV=1) HSP 1 Score: 130.2 bits (326), Expect = 5.6e-27 Identity = 70/105 (66.67%), Postives = 78/105 (74.29%), Query Frame = 0
BLAST of CmaCh00G002560 vs. NCBI nr
Match: XP_022973868.1 (polygalacturonase-like [Cucurbita maxima]) HSP 1 Score: 154.8 bits (390), Expect = 4.4e-34 Identity = 78/96 (81.25%), Postives = 82/96 (85.42%), Query Frame = 0
BLAST of CmaCh00G002560 vs. NCBI nr
Match: XP_022975376.1 (polygalacturonase-like [Cucurbita maxima]) HSP 1 Score: 153.3 bits (386), Expect = 1.3e-33 Identity = 77/96 (80.21%), Postives = 82/96 (85.42%), Query Frame = 0
BLAST of CmaCh00G002560 vs. NCBI nr
Match: XP_022932948.1 (polygalacturonase-like [Cucurbita moschata]) HSP 1 Score: 149.8 bits (377), Expect = 1.4e-32 Identity = 76/96 (79.17%), Postives = 80/96 (83.33%), Query Frame = 0
BLAST of CmaCh00G002560 vs. NCBI nr
Match: XP_022974794.1 (polygalacturonase-like [Cucurbita maxima]) HSP 1 Score: 146.4 bits (368), Expect = 1.6e-31 Identity = 79/128 (61.72%), Postives = 95/128 (74.22%), Query Frame = 0
BLAST of CmaCh00G002560 vs. NCBI nr
Match: XP_023522647.1 (polygalacturonase-like, partial [Cucurbita pepo subsp. pepo]) HSP 1 Score: 140.6 bits (353), Expect = 8.6e-30 Identity = 73/96 (76.04%), Postives = 80/96 (83.33%), Query Frame = 0
BLAST of CmaCh00G002560 vs. TAIR 10
Match: AT3G59850.1 (Pectin lyase-like superfamily protein ) HSP 1 Score: 104.0 bits (258), Expect = 8.3e-23 Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 0
BLAST of CmaCh00G002560 vs. TAIR 10
Match: AT2G43870.1 (Pectin lyase-like superfamily protein ) HSP 1 Score: 99.8 bits (247), Expect = 1.6e-21 Identity = 50/105 (47.62%), Postives = 69/105 (65.71%), Query Frame = 0
BLAST of CmaCh00G002560 vs. TAIR 10
Match: AT2G43860.1 (Pectin lyase-like superfamily protein ) HSP 1 Score: 88.2 bits (217), Expect = 4.7e-18 Identity = 47/96 (48.96%), Postives = 65/96 (67.71%), Query Frame = 0
BLAST of CmaCh00G002560 vs. TAIR 10
Match: AT1G65570.1 (Pectin lyase-like superfamily protein ) HSP 1 Score: 84.3 bits (207), Expect = 6.8e-17 Identity = 40/96 (41.67%), Postives = 64/96 (66.67%), Query Frame = 0
BLAST of CmaCh00G002560 vs. TAIR 10
Match: AT2G43890.1 (Pectin lyase-like superfamily protein ) HSP 1 Score: 76.6 bits (187), Expect = 1.4e-14 Identity = 45/107 (42.06%), Postives = 63/107 (58.88%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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