CmaCh00G002540 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G002540
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	polygalacturonase-like
Location	Cma_Chr00: 18356123 .. 18356704 (+)
RNA-Seq Expression	CmaCh00G002540
Synteny	CmaCh00G002540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTATCCATTACTGGCGATATTATTGATGGGCAAGGAACTCCCCTATGGAATTGTAAACACTCAGGGAAGAGTTGCCCCATTGGAGCCCGGGTATGCAGAATTTAAGTTGGCTCCATATAAAAAAAATTTGAAAATTTTTCTTTAACTGAAATTTGAATGAAAATGACTGGATTAATTACAATACTATTTTAAATTTTTACTAATTCTCCCTTTTGATTGTTTTGAATTGATAGTCTTCAAATAAATGATGGAAAGAATTTGAACATCAACGGATTATCTTCAATTAACAGCCAATTGTTCAACATTGTAATGAATCGGTGTCAAAACGTGCATATGACAAGAGTGAATGTCTTGGCTGCATGCGATAGTCCAAACACTGATGGCATCCATGTGCGACAATCATCAGATGTGACCATCCTCAACTCAAACATTAGAAACGGTGACGACTGCATCTCCATCGGTCCAGGCACATCCAACATGTGGATCGAAAGTATTACATGTAGACCTGGACATGGAATCAGGTAACTAAAGATAGATTAGGATAAACATGTTTAGAAATGTTTTTTAAAGGGTTTAA

mRNA sequence

ATGGGCTATCCATTACTGGCGATATTATTGATGGGCAAGGAACTCCCCTATGGAATTGTAAACACTCAGGGAAGAGTTGCCCCATTGGAGCCCGGTCTTCAAATAAATGATGGAAAGAATTTGAACATCAACGGATTATCTTCAATTAACAGCCAATTGTTCAACATTGTAATGAATCGGTGTCAAAACGTGCATATGACAAGAGTGAATGTCTTGGCTGCATGCGATAGTCCAAACACTGATGGCATCCATGTGCGACAATCATCAGATGTGACCATCCTCAACTCAAACATTAGAAACGGTGACGACTGCATCTCCATCGGTCCAGGCACATCCAACATGTGGATCGAAAGTATTACATGTAGACCTGGACATGGAATCAGGGTTTAA

Coding sequence (CDS)

ATGGGCTATCCATTACTGGCGATATTATTGATGGGCAAGGAACTCCCCTATGGAATTGTAAACACTCAGGGAAGAGTTGCCCCATTGGAGCCCGGTCTTCAAATAAATGATGGAAAGAATTTGAACATCAACGGATTATCTTCAATTAACAGCCAATTGTTCAACATTGTAATGAATCGGTGTCAAAACGTGCATATGACAAGAGTGAATGTCTTGGCTGCATGCGATAGTCCAAACACTGATGGCATCCATGTGCGACAATCATCAGATGTGACCATCCTCAACTCAAACATTAGAAACGGTGACGACTGCATCTCCATCGGTCCAGGCACATCCAACATGTGGATCGAAAGTATTACATGTAGACCTGGACATGGAATCAGGGTTTAA

Protein sequence

MGYPLLAILLMGKELPYGIVNTQGRVAPLEPGLQINDGKNLNINGLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESITCRPGHGIRV

Homology

[Close]

BLAST of CmaCh00G002540 vs. ExPASy Swiss-Prot
Match: P48979 (Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.5e-28
Identity = 58/97 (59.79%), Postives = 74/97 (76.29%), Query Frame = 0


Query: 33  LQINDGKNLNINGLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGIHVRQSSDVT 92
           L  +D  N+ ++GL+S+NSQ+F+IV+N  QNV M  V V  + +SPNTDGIHV+ SS VT
Sbjct: 150 LGFSDSNNIVVSGLASLNSQMFHIVINDFQNVQMQGVRVSRSGNSPNTDGIHVQMSSGVT 209

Query: 93  ILNSNIRNGDDCISIGPGTSNMWIESITCRPGHGIRV 130
           ILNS I  GDDC+SIGPGTSN+WIE + C PGHGI +
Sbjct: 210 ILNSKIATGDDCVSIGPGTSNLWIEGVACGPGHGISI 246

[Close]

BLAST of CmaCh00G002540 vs. ExPASy Swiss-Prot
Match: O22818 (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.5e-22
Identity = 52/97 (53.61%), Postives = 69/97 (71.13%), Query Frame = 0


Query: 33  LQINDGKNLNINGLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGIHVRQSSDVT 92
           L  +   N+ I+GL+SINSQ F+IV++   NV++  V V A  +SPNTDGIHV  S  V 
Sbjct: 156 LVFSGSNNIKISGLTSINSQKFHIVIDNSNNVNIDGVKVSADENSPNTDGIHVESSHSVH 215

Query: 93  ILNSNIRNGDDCISIGPGTSNMWIESITCRPGHGIRV 130
           I NS I  GDDCISIGPG++N++I++I C PGHGI +
Sbjct: 216 ITNSRIGTGDDCISIGPGSTNVFIQTIRCGPGHGISI 252

[Close]

BLAST of CmaCh00G002540 vs. ExPASy Swiss-Prot
Match: P49062 (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.5e-20
Identity = 41/97 (42.27%), Postives = 71/97 (73.20%), Query Frame = 0


Query: 33  LQINDGKNLNINGLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGIHVRQSSDVT 92
           L+  + KN+ ING+SS+N++ F++ + + +NV++  + + A  +SPNTDGIH+  + +V+
Sbjct: 172 LKFRNMKNVEINGISSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTDGIHLSNADNVS 231

Query: 93  ILNSNIRNGDDCISIGPGTSNMWIESITCRPGHGIRV 130
           IL+S I  GDDC+S+G G++N+ +E + C PGHG+ V
Sbjct: 232 ILDSTIATGDDCVSVGRGSNNVTVERVICGPGHGLSV 268

[Close]

BLAST of CmaCh00G002540 vs. ExPASy Swiss-Prot
Match: P35339 (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.2e-20
Identity = 48/95 (50.53%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 35  INDGKNLNINGLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGIHVRQSSDVTIL 94
           +N+G+   ++G++ +NS+ F++ M +C+++ +  VNV A  DSPNTDGIH+  SS VTI 
Sbjct: 169 VNNGE---VSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTIT 228

Query: 95  NSNIRNGDDCISIGPGTSNMWIESITCRPGHGIRV 130
           N+ I  GDDCISIGPGTS + I  +TC PGHGI +
Sbjct: 229 NTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISI 260

[Close]

BLAST of CmaCh00G002540 vs. ExPASy Swiss-Prot
Match: Q05967 (Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-19
Identity = 46/101 (45.54%), Postives = 65/101 (64.36%), Query Frame = 0


Query: 29  LEPGLQINDGKNLNINGLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGIHVRQS 88
           L   L  N   N  I  +++++S+ F++ +N+C+N+   R NV A  +SPNTDGIHV +S
Sbjct: 140 LPNNLSFNSLTNSTIKDITTLDSKSFHVNVNQCKNLTFIRFNVSAPANSPNTDGIHVSRS 199

Query: 89  SDVTILNSNIRNGDDCISIGPGTSNMWIESITCRPGHGIRV 130
           S V I +SN   GDDCIS+G  T  ++I  +TC PGHGI V
Sbjct: 200 SSVNITDSNFSTGDDCISVGDETEQLYITRVTCGPGHGISV 240

[Close]

BLAST of CmaCh00G002540 vs. ExPASy TrEMBL
Match: A0A6J1IIL8 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111473551 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.4e-66
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MGYPLLAILLMGKELPYGIVNTQGRVAPLEPGLQINDGKNLNINGLSSINSQLFNIVMNR 60
           MGYPLLAILLMGKELPYGIVNTQGRVAPLEPGLQINDGKNLNINGLSSINSQLFNIVMNR
Sbjct: 1   MGYPLLAILLMGKELPYGIVNTQGRVAPLEPGLQINDGKNLNINGLSSINSQLFNIVMNR 60

Query: 61  CQNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESIT 120
           CQNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESIT
Sbjct: 61  CQNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESIT 120

Query: 121 CRPGHGI 128
           CRPGHGI
Sbjct: 121 CRPGHGI 127

[Close]

BLAST of CmaCh00G002540 vs. ExPASy TrEMBL
Match: A0A6J1IEV2 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111473552 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.3e-43
Identity = 90/97 (92.78%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 33  LQINDGKNLNINGLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGIHVRQSSDVT 92
           LQINDGKN+NINGLSSINSQLF+IVMNRCQNVHMTRVNVLAA DSPNTDGIHVRQSSDVT
Sbjct: 158 LQINDGKNVNINGLSSINSQLFSIVMNRCQNVHMTRVNVLAAGDSPNTDGIHVRQSSDVT 217

Query: 93  ILNSNIRNGDDCISIGPGTSNMWIESITCRPGHGIRV 130
           ILNSNI NGDDCISIGPGTSNMWIESITC PGHGI +
Sbjct: 218 ILNSNIGNGDDCISIGPGTSNMWIESITCGPGHGISI 254

[Close]

BLAST of CmaCh00G002540 vs. ExPASy TrEMBL
Match: A0A6J1ICF5 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111472456 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.8e-42
Identity = 94/128 (73.44%), Postives = 100/128 (78.12%), Query Frame = 0


Query: 2   GYPLLAILLMGKELPYGIVNTQGRVAPLEPGLQINDGKNLNINGLSSINSQLFNIVMNRC 61
           G PLL     GK  P G  +           LQINDGKN+NINGLSSINSQLF+I MNRC
Sbjct: 15  GTPLLNCKHSGKSCPIGAWS-----------LQINDGKNVNINGLSSINSQLFSIAMNRC 74

Query: 62  QNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESITC 121
           QNVHMTRVNVLAA DSPNTDGIHV+QSSDVTILN NI NGDDCISIGPGTSNMW+ESITC
Sbjct: 75  QNVHMTRVNVLAAGDSPNTDGIHVQQSSDVTILNLNIGNGDDCISIGPGTSNMWMESITC 131

Query: 122 RPGHGIRV 130
            PGHGI +
Sbjct: 135 GPGHGISI 131

[Close]

BLAST of CmaCh00G002540 vs. ExPASy TrEMBL
Match: A0A6J1F489 (polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111440267 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.8e-42
Identity = 92/129 (71.32%), Postives = 102/129 (79.07%), Query Frame = 0


Query: 2   GYPLLAILLMGKELPYGIVNTQGRVAPL-EPGLQINDGKNLNINGLSSINSQLFNIVMNR 61
           G  +   ++ G+  P       G+  P+    LQINDGKN+NINGLSSINSQLF I MNR
Sbjct: 126 GLSITGGIIDGQGTPLWNCKHSGKSCPIGARSLQINDGKNVNINGLSSINSQLFGIGMNR 185

Query: 62  CQNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESIT 121
           CQNVHMTRVNVLAA DSPNTDGIHV+QSSDVTILNSNI NGDDCISIGPGTSNMWIE+IT
Sbjct: 186 CQNVHMTRVNVLAAGDSPNTDGIHVQQSSDVTILNSNIGNGDDCISIGPGTSNMWIETIT 245

Query: 122 CRPGHGIRV 130
           C PGHGI +
Sbjct: 246 CGPGHGISI 254

[Close]

BLAST of CmaCh00G002540 vs. ExPASy TrEMBL
Match: A0A6J1HFX3 (polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111463942 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.1e-42
Identity = 87/97 (89.69%), Postives = 92/97 (94.85%), Query Frame = 0


Query: 33  LQINDGKNLNINGLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGIHVRQSSDVT 92
           LQINDGKN+NINGLSSINSQLF IVMNRCQNVHM+RVNVLAA DSPNTDGIHV+QSSDVT
Sbjct: 158 LQINDGKNVNINGLSSINSQLFGIVMNRCQNVHMSRVNVLAAGDSPNTDGIHVQQSSDVT 217

Query: 93  ILNSNIRNGDDCISIGPGTSNMWIESITCRPGHGIRV 130
           ILNSNI NGDDCISIGPGTSNMWIE+ITC PGHGI +
Sbjct: 218 ILNSNIGNGDDCISIGPGTSNMWIETITCGPGHGISI 254

[Close]

BLAST of CmaCh00G002540 vs. NCBI nr
Match: XP_022974794.1 (polygalacturonase-like [Cucurbita maxima])

HSP 1 Score: 261.9 bits (668), Expect = 2.9e-66
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MGYPLLAILLMGKELPYGIVNTQGRVAPLEPGLQINDGKNLNINGLSSINSQLFNIVMNR 60
           MGYPLLAILLMGKELPYGIVNTQGRVAPLEPGLQINDGKNLNINGLSSINSQLFNIVMNR
Sbjct: 1   MGYPLLAILLMGKELPYGIVNTQGRVAPLEPGLQINDGKNLNINGLSSINSQLFNIVMNR 60

Query: 61  CQNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESIT 120
           CQNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESIT
Sbjct: 61  CQNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESIT 120

Query: 121 CRPGHGI 128
           CRPGHGI
Sbjct: 121 CRPGHGI 127

[Close]

BLAST of CmaCh00G002540 vs. NCBI nr
Match: XP_022974795.1 (polygalacturonase-like [Cucurbita maxima])

HSP 1 Score: 185.7 bits (470), Expect = 2.6e-43
Identity = 90/97 (92.78%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 33  LQINDGKNLNINGLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGIHVRQSSDVT 92
           LQINDGKN+NINGLSSINSQLF+IVMNRCQNVHMTRVNVLAA DSPNTDGIHVRQSSDVT
Sbjct: 158 LQINDGKNVNINGLSSINSQLFSIVMNRCQNVHMTRVNVLAAGDSPNTDGIHVRQSSDVT 217

Query: 93  ILNSNIRNGDDCISIGPGTSNMWIESITCRPGHGIRV 130
           ILNSNI NGDDCISIGPGTSNMWIESITC PGHGI +
Sbjct: 218 ILNSNIGNGDDCISIGPGTSNMWIESITCGPGHGISI 254

[Close]

BLAST of CmaCh00G002540 vs. NCBI nr
Match: XP_022933258.1 (polygalacturonase-like [Cucurbita moschata])

HSP 1 Score: 181.8 bits (460), Expect = 3.8e-42
Identity = 92/129 (71.32%), Postives = 102/129 (79.07%), Query Frame = 0


Query: 2   GYPLLAILLMGKELPYGIVNTQGRVAPL-EPGLQINDGKNLNINGLSSINSQLFNIVMNR 61
           G  +   ++ G+  P       G+  P+    LQINDGKN+NINGLSSINSQLF I MNR
Sbjct: 126 GLSITGGIIDGQGTPLWNCKHSGKSCPIGARSLQINDGKNVNINGLSSINSQLFGIGMNR 185

Query: 62  CQNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESIT 121
           CQNVHMTRVNVLAA DSPNTDGIHV+QSSDVTILNSNI NGDDCISIGPGTSNMWIE+IT
Sbjct: 186 CQNVHMTRVNVLAAGDSPNTDGIHVQQSSDVTILNSNIGNGDDCISIGPGTSNMWIETIT 245

Query: 122 CRPGHGIRV 130
           C PGHGI +
Sbjct: 246 CGPGHGISI 254

[Close]

BLAST of CmaCh00G002540 vs. NCBI nr
Match: XP_022973865.1 (polygalacturonase-like [Cucurbita maxima])

HSP 1 Score: 181.8 bits (460), Expect = 3.8e-42
Identity = 94/128 (73.44%), Postives = 100/128 (78.12%), Query Frame = 0


Query: 2   GYPLLAILLMGKELPYGIVNTQGRVAPLEPGLQINDGKNLNINGLSSINSQLFNIVMNRC 61
           G PLL     GK  P G  +           LQINDGKN+NINGLSSINSQLF+I MNRC
Sbjct: 15  GTPLLNCKHSGKSCPIGAWS-----------LQINDGKNVNINGLSSINSQLFSIAMNRC 74

Query: 62  QNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESITC 121
           QNVHMTRVNVLAA DSPNTDGIHV+QSSDVTILN NI NGDDCISIGPGTSNMW+ESITC
Sbjct: 75  QNVHMTRVNVLAAGDSPNTDGIHVQQSSDVTILNLNIGNGDDCISIGPGTSNMWMESITC 131

Query: 122 RPGHGIRV 130
            PGHGI +
Sbjct: 135 GPGHGISI 131

[Close]

BLAST of CmaCh00G002540 vs. NCBI nr
Match: XP_022963687.1 (polygalacturonase-like [Cucurbita moschata])

HSP 1 Score: 181.0 bits (458), Expect = 6.4e-42
Identity = 87/97 (89.69%), Postives = 92/97 (94.85%), Query Frame = 0


Query: 33  LQINDGKNLNINGLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGIHVRQSSDVT 92
           LQINDGKN+NINGLSSINSQLF IVMNRCQNVHM+RVNVLAA DSPNTDGIHV+QSSDVT
Sbjct: 158 LQINDGKNVNINGLSSINSQLFGIVMNRCQNVHMSRVNVLAAGDSPNTDGIHVQQSSDVT 217

Query: 93  ILNSNIRNGDDCISIGPGTSNMWIESITCRPGHGIRV 130
           ILNSNI NGDDCISIGPGTSNMWIE+ITC PGHGI +
Sbjct: 218 ILNSNIGNGDDCISIGPGTSNMWIETITCGPGHGISI 254

[Close]

BLAST of CmaCh00G002540 vs. TAIR 10
Match: AT2G43870.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-27
Identity = 52/90 (57.78%), Postives = 72/90 (80.00%), Query Frame = 0


Query: 40  NLNINGLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNIR 99
           N+ ++GL+S+NSQ+F++V+N C NV +  V VLAA +SPNTDGIHV+ SS V+I N+ I 
Sbjct: 150 NVVVSGLTSLNSQMFHVVINGCNNVKLQGVKVLAAGNSPNTDGIHVQSSSSVSIFNTKIS 209

Query: 100 NGDDCISIGPGTSNMWIESITCRPGHGIRV 130
            GDDC+SIGPGT+ +WIE++ C PGHGI +
Sbjct: 210 TGDDCVSIGPGTNGLWIENVACGPGHGISI 239

[Close]

BLAST of CmaCh00G002540 vs. TAIR 10
Match: AT1G65570.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 119.0 bits (297), Expect = 2.8e-27
Identity = 50/97 (51.55%), Postives = 74/97 (76.29%), Query Frame = 0


Query: 33  LQINDGKNLNINGLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGIHVRQSSDVT 92
           L+  D  N+ I G+ S+NSQLF+I +NRC+N+ +  V ++A  +SPNTDGIH++ S+D+ 
Sbjct: 154 LRFMDSNNVKIKGVLSLNSQLFHIAINRCRNIKIEDVRIIAPDESPNTDGIHIQLSTDIE 213

Query: 93  ILNSNIRNGDDCISIGPGTSNMWIESITCRPGHGIRV 130
           + N++I+ GDDCISIGPGT N+ ++ ITC PGHGI +
Sbjct: 214 VRNASIKTGDDCISIGPGTKNLMVDGITCGPGHGISI 250

[Close]

BLAST of CmaCh00G002540 vs. TAIR 10
Match: AT3G59850.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 117.9 bits (294), Expect = 6.2e-27
Identity = 52/91 (57.14%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 39  KNLNINGLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNI 98
           +N+ I+GL+S+NSQ+F++ +N C NV +  V V A  +SPNTDGIHV+ SS V+ILNS I
Sbjct: 151 RNVVISGLTSLNSQMFHVAINGCSNVKLDGVKVSADGNSPNTDGIHVQSSSTVSILNSKI 210

Query: 99  RNGDDCISIGPGTSNMWIESITCRPGHGIRV 130
             GDDC+SIGPGT+ +WIE++ C PGHGI +
Sbjct: 211 STGDDCVSIGPGTNGLWIENVACGPGHGISI 241

[Close]

BLAST of CmaCh00G002540 vs. TAIR 10
Match: AT2G43860.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 105.5 bits (262), Expect = 3.2e-23
Identity = 52/97 (53.61%), Postives = 69/97 (71.13%), Query Frame = 0


Query: 33  LQINDGKNLNINGLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGIHVRQSSDVT 92
           L  +   N+ I+GL+SINSQ F+IV++   NV++  V V A  +SPNTDGIHV  S  V 
Sbjct: 156 LVFSGSNNIKISGLTSINSQKFHIVIDNSNNVNIDGVKVSADENSPNTDGIHVESSHSVH 215

Query: 93  ILNSNIRNGDDCISIGPGTSNMWIESITCRPGHGIRV 130
           I NS I  GDDCISIGPG++N++I++I C PGHGI +
Sbjct: 216 ITNSRIGTGDDCISIGPGSTNVFIQTIRCGPGHGISI 252

[Close]

BLAST of CmaCh00G002540 vs. TAIR 10
Match: AT2G43890.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-21
Identity = 44/97 (45.36%), Postives = 67/97 (69.07%), Query Frame = 0


Query: 33  LQINDGKNLNINGLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGIHVRQSSDVT 92
           +  N   ++ ++GL+SINSQ  ++V+N C NV + +V ++A   SPNTDG+HV+ S+ VT
Sbjct: 149 MTFNWANDVVVSGLTSINSQTTHLVINSCNNVIVRKVKLVAPDQSPNTDGLHVQGSAGVT 208

Query: 93  ILNSNIRNGDDCISIGPGTSNMWIESITCRPGHGIRV 130
           + +     GDDCISIGPGT N+++  + C PGHGI +
Sbjct: 209 VTDGTFHTGDDCISIGPGTRNLYMSKLNCGPGHGISI 245

The following BLAST results are available for this feature:

BLAST of CmaCh00G002540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P48979	5.5e-28	59.79	Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1	[more]
O22818	4.5e-22	53.61	Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g4386...	[more]
P49062	2.5e-20	42.27	Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 ...	[more]
P35339	7.2e-20	50.53	Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1	[more]
Q05967	1.2e-19	45.54	Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1	[more]

BLAST of CmaCh00G002540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IIL8	1.4e-66	100.00	polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111473551 PE=3 SV=1	[more]
A0A6J1IEV2	1.3e-43	92.78	polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111473552 PE=3 SV=1	[more]
A0A6J1ICF5	1.8e-42	73.44	polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111472456 PE=3 SV=1	[more]
A0A6J1F489	1.8e-42	71.32	polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111440267 PE=3 SV=1	[more]
A0A6J1HFX3	3.1e-42	89.69	polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111463942 PE=3 SV=1	[more]

BLAST of CmaCh00G002540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022974794.1	2.9e-66	100.00	polygalacturonase-like [Cucurbita maxima]	[more]
XP_022974795.1	2.6e-43	92.78	polygalacturonase-like [Cucurbita maxima]	[more]
XP_022933258.1	3.8e-42	71.32	polygalacturonase-like [Cucurbita moschata]	[more]
XP_022973865.1	3.8e-42	73.44	polygalacturonase-like [Cucurbita maxima]	[more]
XP_022963687.1	6.4e-42	89.69	polygalacturonase-like [Cucurbita moschata]	[more]

BLAST of CmaCh00G002540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43870.1	1.3e-27	57.78	Pectin lyase-like superfamily protein	[more]
AT1G65570.1	2.8e-27	51.55	Pectin lyase-like superfamily protein	[more]
AT3G59850.1	6.2e-27	57.14	Pectin lyase-like superfamily protein	[more]
AT2G43860.1	3.2e-23	53.61	Pectin lyase-like superfamily protein	[more]
AT2G43890.1	1.0e-21	45.36	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 33..128 e-value: 1.9E-30 score: 106.0
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 16..129 e-value: 2.8E-33 score: 117.5
None	No IPR available	PANTHER	PTHR31375:SF246	PECTIN LYASE-LIKE SUPERFAMILY PROTEIN	coord: 29..128
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 29..128
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 32..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G002540.1	CmaCh00G002540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098656	anion transmembrane transport
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0015698	inorganic anion transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005741	mitochondrial outer membrane
molecular_function	GO:0004650	polygalacturonase activity
molecular_function	GO:0008308	voltage-gated anion channel activity