CmaCh00G002540 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCTATCCATTACTGGCGATATTATTGATGGGCAAGGAACTCCCCTATGGAATTGTAAACACTCAGGGAAGAGTTGCCCCATTGGAGCCCGGGTATGCAGAATTTAAGTTGGCTCCATATAAAAAAAATTTGAAAATTTTTCTTTAACTGAAATTTGAATGAAAATGACTGGATTAATTACAATACTATTTTAAATTTTTACTAATTCTCCCTTTTGATTGTTTTGAATTGATAGTCTTCAAATAAATGATGGAAAGAATTTGAACATCAACGGATTATCTTCAATTAACAGCCAATTGTTCAACATTGTAATGAATCGGTGTCAAAACGTGCATATGACAAGAGTGAATGTCTTGGCTGCATGCGATAGTCCAAACACTGATGGCATCCATGTGCGACAATCATCAGATGTGACCATCCTCAACTCAAACATTAGAAACGGTGACGACTGCATCTCCATCGGTCCAGGCACATCCAACATGTGGATCGAAAGTATTACATGTAGACCTGGACATGGAATCAGGTAACTAAAGATAGATTAGGATAAACATGTTTAGAAATGTTTTTTAAAGGGTTTAA ATGGGCTATCCATTACTGGCGATATTATTGATGGGCAAGGAACTCCCCTATGGAATTGTAAACACTCAGGGAAGAGTTGCCCCATTGGAGCCCGGTCTTCAAATAAATGATGGAAAGAATTTGAACATCAACGGATTATCTTCAATTAACAGCCAATTGTTCAACATTGTAATGAATCGGTGTCAAAACGTGCATATGACAAGAGTGAATGTCTTGGCTGCATGCGATAGTCCAAACACTGATGGCATCCATGTGCGACAATCATCAGATGTGACCATCCTCAACTCAAACATTAGAAACGGTGACGACTGCATCTCCATCGGTCCAGGCACATCCAACATGTGGATCGAAAGTATTACATGTAGACCTGGACATGGAATCAGGGTTTAA ATGGGCTATCCATTACTGGCGATATTATTGATGGGCAAGGAACTCCCCTATGGAATTGTAAACACTCAGGGAAGAGTTGCCCCATTGGAGCCCGGTCTTCAAATAAATGATGGAAAGAATTTGAACATCAACGGATTATCTTCAATTAACAGCCAATTGTTCAACATTGTAATGAATCGGTGTCAAAACGTGCATATGACAAGAGTGAATGTCTTGGCTGCATGCGATAGTCCAAACACTGATGGCATCCATGTGCGACAATCATCAGATGTGACCATCCTCAACTCAAACATTAGAAACGGTGACGACTGCATCTCCATCGGTCCAGGCACATCCAACATGTGGATCGAAAGTATTACATGTAGACCTGGACATGGAATCAGGGTTTAA MGYPLLAILLMGKELPYGIVNTQGRVAPLEPGLQINDGKNLNINGLSSINSQLFNIVMNRCQNVHMTRVNVLAACDSPNTDGIHVRQSSDVTILNSNIRNGDDCISIGPGTSNMWIESITCRPGHGIRV Homology
BLAST of CmaCh00G002540 vs. ExPASy Swiss-Prot
Match: P48979 (Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 5.5e-28 Identity = 58/97 (59.79%), Postives = 74/97 (76.29%), Query Frame = 0
BLAST of CmaCh00G002540 vs. ExPASy Swiss-Prot
Match: O22818 (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g43860 PE=2 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 4.5e-22 Identity = 52/97 (53.61%), Postives = 69/97 (71.13%), Query Frame = 0
BLAST of CmaCh00G002540 vs. ExPASy Swiss-Prot
Match: P49062 (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 2.5e-20 Identity = 41/97 (42.27%), Postives = 71/97 (73.20%), Query Frame = 0
BLAST of CmaCh00G002540 vs. ExPASy Swiss-Prot
Match: P35339 (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 7.2e-20 Identity = 48/95 (50.53%), Postives = 69/95 (72.63%), Query Frame = 0
BLAST of CmaCh00G002540 vs. ExPASy Swiss-Prot
Match: Q05967 (Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 1.2e-19 Identity = 46/101 (45.54%), Postives = 65/101 (64.36%), Query Frame = 0
BLAST of CmaCh00G002540 vs. ExPASy TrEMBL
Match: A0A6J1IIL8 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111473551 PE=3 SV=1) HSP 1 Score: 261.9 bits (668), Expect = 1.4e-66 Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0
BLAST of CmaCh00G002540 vs. ExPASy TrEMBL
Match: A0A6J1IEV2 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111473552 PE=3 SV=1) HSP 1 Score: 185.7 bits (470), Expect = 1.3e-43 Identity = 90/97 (92.78%), Postives = 93/97 (95.88%), Query Frame = 0
BLAST of CmaCh00G002540 vs. ExPASy TrEMBL
Match: A0A6J1ICF5 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111472456 PE=3 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 1.8e-42 Identity = 94/128 (73.44%), Postives = 100/128 (78.12%), Query Frame = 0
BLAST of CmaCh00G002540 vs. ExPASy TrEMBL
Match: A0A6J1F489 (polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111440267 PE=3 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 1.8e-42 Identity = 92/129 (71.32%), Postives = 102/129 (79.07%), Query Frame = 0
BLAST of CmaCh00G002540 vs. ExPASy TrEMBL
Match: A0A6J1HFX3 (polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111463942 PE=3 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 3.1e-42 Identity = 87/97 (89.69%), Postives = 92/97 (94.85%), Query Frame = 0
BLAST of CmaCh00G002540 vs. NCBI nr
Match: XP_022974794.1 (polygalacturonase-like [Cucurbita maxima]) HSP 1 Score: 261.9 bits (668), Expect = 2.9e-66 Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0
BLAST of CmaCh00G002540 vs. NCBI nr
Match: XP_022974795.1 (polygalacturonase-like [Cucurbita maxima]) HSP 1 Score: 185.7 bits (470), Expect = 2.6e-43 Identity = 90/97 (92.78%), Postives = 93/97 (95.88%), Query Frame = 0
BLAST of CmaCh00G002540 vs. NCBI nr
Match: XP_022933258.1 (polygalacturonase-like [Cucurbita moschata]) HSP 1 Score: 181.8 bits (460), Expect = 3.8e-42 Identity = 92/129 (71.32%), Postives = 102/129 (79.07%), Query Frame = 0
BLAST of CmaCh00G002540 vs. NCBI nr
Match: XP_022973865.1 (polygalacturonase-like [Cucurbita maxima]) HSP 1 Score: 181.8 bits (460), Expect = 3.8e-42 Identity = 94/128 (73.44%), Postives = 100/128 (78.12%), Query Frame = 0
BLAST of CmaCh00G002540 vs. NCBI nr
Match: XP_022963687.1 (polygalacturonase-like [Cucurbita moschata]) HSP 1 Score: 181.0 bits (458), Expect = 6.4e-42 Identity = 87/97 (89.69%), Postives = 92/97 (94.85%), Query Frame = 0
BLAST of CmaCh00G002540 vs. TAIR 10
Match: AT2G43870.1 (Pectin lyase-like superfamily protein ) HSP 1 Score: 120.2 bits (300), Expect = 1.3e-27 Identity = 52/90 (57.78%), Postives = 72/90 (80.00%), Query Frame = 0
BLAST of CmaCh00G002540 vs. TAIR 10
Match: AT1G65570.1 (Pectin lyase-like superfamily protein ) HSP 1 Score: 119.0 bits (297), Expect = 2.8e-27 Identity = 50/97 (51.55%), Postives = 74/97 (76.29%), Query Frame = 0
BLAST of CmaCh00G002540 vs. TAIR 10
Match: AT3G59850.1 (Pectin lyase-like superfamily protein ) HSP 1 Score: 117.9 bits (294), Expect = 6.2e-27 Identity = 52/91 (57.14%), Postives = 71/91 (78.02%), Query Frame = 0
BLAST of CmaCh00G002540 vs. TAIR 10
Match: AT2G43860.1 (Pectin lyase-like superfamily protein ) HSP 1 Score: 105.5 bits (262), Expect = 3.2e-23 Identity = 52/97 (53.61%), Postives = 69/97 (71.13%), Query Frame = 0
BLAST of CmaCh00G002540 vs. TAIR 10
Match: AT2G43890.1 (Pectin lyase-like superfamily protein ) HSP 1 Score: 100.5 bits (249), Expect = 1.0e-21 Identity = 44/97 (45.36%), Postives = 67/97 (69.07%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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