CmaCh00G002450 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G002450
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Location	Cma_Chr00: 18163706 .. 18164923 (-)
RNA-Seq Expression	CmaCh00G002450
Synteny	CmaCh00G002450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACATAATGGAGAAGCAATATCACCAGTACCAGATCTTAATACAACCATTCTTCAAGCAATTCAAGGTATGATGGAAATGATGATGGAAGATAGACAAGAAAGAAGGGCGCAACAACAAAGACAAGAACAAACATTACAAGAAGATGAAGGTATAGTAGTACAAGAAAGACAAGTTGAAAGAAGATGGAGAGGAAGAAATAACCATGCAACTATTATGCAATCTAGAAGGATGGAAAGAGTACATGAAGATAGAGATGGGGGAGTTAAACTCAAAATCCCACCTTTTTGTGGAACGGCAGATTCTGAGGCATACTTGCAATGGGAAAGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTTGCTATTGCCGAATTTACCAATTATGTCGGTGATTGGTACCAACATCTCAAATCCGAGAGAAGAAGAAAAGAGGAGCATCCAATAGAGACTTGGGAAGAACTTAAAGAAGCCATGAGAAAAAGGTATGTTCCAAAACATTATGAAAGAAATTTGAAAACTAAATTGCAAGGTTTGAGGCAAGAAACAAAAAGTGTGGCGGAATATTATCTAGAGAAGACTATGATGGAAATAGCAAATGTTAGAGAAGTAGAAGAAGATATCATGTATAGATTCATTGGAGGTTTGAATCGAGAAATTGCTCATCTTGTTGATAGAAATCCACCACCAAATCTGGAAGACATGTATCATTATGCTCTCAAAATTGAAGACCAATTGAAGGAAGAAAAAGAGCATTCAAAAAGGTACACATCACGAACTAACACCTTTTCAAATTCTAAAACTTGGAACAAGGATAGTTTTGTGGATAGAAATGGATCGTTGTCACCAAAAGAAAAGTTTGTGGCTGCTAAAAGAGTGGAAGCTGAGAGTTCCAATGGTAAAAAGAATGAAACTTCAAAGACGGTAAAGGAGAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGGTTTGGACACATGAGCAAAGAGTGTGTTAATAAAAATGTTATAGTGATAAGGAATGGTATACTTGATTCAGATGATGAATGTGAGGATCATGATTCACAGCTTGTGGAAGAAATCGCAGCATATGATGATGAATATGTTGAAGAAGGTAATTTCATATCTTTGATCACAGCATTGTTGGCGCTTAGCGCTTATCATTTGAGCCTCCACCCTTTTAGCAAATGA

mRNA sequence

ATGTCACATAATGGAGAAGCAATATCACCAGTACCAGATCTTAATACAACCATTCTTCAAGCAATTCAAGGTATGATGGAAATGATGATGGAAGATAGACAAGAAAGAAGGGCGCAACAACAAAGACAAGAACAAACATTACAAGAAGATGAAGGTATAGTAGTACAAGAAAGACAAGTTGAAAGAAGATGGAGAGGAAGAAATAACCATGCAACTATTATGCAATCTAGAAGGATGGAAAGAGTACATGAAGATAGAGATGGGGGAGTTAAACTCAAAATCCCACCTTTTTGTGGAACGGCAGATTCTGAGGCATACTTGCAATGGGAAAGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTTGCTATTGCCGAATTTACCAATTATGTCGGTGATTGGTACCAACATCTCAAATCCGAGAGAAGAAGAAAAGAGGAGCATCCAATAGAGACTTGGGAAGAACTTAAAGAAGCCATGAGAAAAAGGTATGTTCCAAAACATTATGAAAGAAATTTGAAAACTAAATTGCAAGGTTTGAGGCAAGAAACAAAAAGTGTGGCGGAATATTATCTAGAGAAGACTATGATGGAAATAGCAAATGTTAGAGAAGTAGAAGAAGATATCATGTATAGATTCATTGGAGGTTTGAATCGAGAAATTGCTCATCTTGTTGATAGAAATCCACCACCAAATCTGGAAGACATGTATCATTATGCTCTCAAAATTGAAGACCAATTGAAGGAAGAAAAAGAGCATTCAAAAAGGTACACATCACGAACTAACACCTTTTCAAATTCTAAAACTTGGAACAAGGATAGTTTTGTGGATAGAAATGGATCGTTGTCACCAAAAGAAAAGTTTGTGGCTGCTAAAAGAGTGGAAGCTGAGAGTTCCAATGGTAAAAAGAATGAAACTTCAAAGACGGTAAAGGAGAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGGTTTGGACACATGAGCAAAGAGTGTGTTAATAAAAATGTTATAGTGATAAGGAATGGTATACTTGATTCAGATGATGAATGTGAGGATCATGATTCACAGCTTGTGGAAGAAATCGCAGCATATGATGATGAATATGTTGAAGAAGGTAATTTCATATCTTTGATCACAGCATTGTTGGCGCTTAGCGCTTATCATTTGAGCCTCCACCCTTTTAGCAAATGA

Coding sequence (CDS)

ATGTCACATAATGGAGAAGCAATATCACCAGTACCAGATCTTAATACAACCATTCTTCAAGCAATTCAAGGTATGATGGAAATGATGATGGAAGATAGACAAGAAAGAAGGGCGCAACAACAAAGACAAGAACAAACATTACAAGAAGATGAAGGTATAGTAGTACAAGAAAGACAAGTTGAAAGAAGATGGAGAGGAAGAAATAACCATGCAACTATTATGCAATCTAGAAGGATGGAAAGAGTACATGAAGATAGAGATGGGGGAGTTAAACTCAAAATCCCACCTTTTTGTGGAACGGCAGATTCTGAGGCATACTTGCAATGGGAAAGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTTGCTATTGCCGAATTTACCAATTATGTCGGTGATTGGTACCAACATCTCAAATCCGAGAGAAGAAGAAAAGAGGAGCATCCAATAGAGACTTGGGAAGAACTTAAAGAAGCCATGAGAAAAAGGTATGTTCCAAAACATTATGAAAGAAATTTGAAAACTAAATTGCAAGGTTTGAGGCAAGAAACAAAAAGTGTGGCGGAATATTATCTAGAGAAGACTATGATGGAAATAGCAAATGTTAGAGAAGTAGAAGAAGATATCATGTATAGATTCATTGGAGGTTTGAATCGAGAAATTGCTCATCTTGTTGATAGAAATCCACCACCAAATCTGGAAGACATGTATCATTATGCTCTCAAAATTGAAGACCAATTGAAGGAAGAAAAAGAGCATTCAAAAAGGTACACATCACGAACTAACACCTTTTCAAATTCTAAAACTTGGAACAAGGATAGTTTTGTGGATAGAAATGGATCGTTGTCACCAAAAGAAAAGTTTGTGGCTGCTAAAAGAGTGGAAGCTGAGAGTTCCAATGGTAAAAAGAATGAAACTTCAAAGACGGTAAAGGAGAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGGTTTGGACACATGAGCAAAGAGTGTGTTAATAAAAATGTTATAGTGATAAGGAATGGTATACTTGATTCAGATGATGAATGTGAGGATCATGATTCACAGCTTGTGGAAGAAATCGCAGCATATGATGATGAATATGTTGAAGAAGGTAATTTCATATCTTTGATCACAGCATTGTTGGCGCTTAGCGCTTATCATTTGAGCCTCCACCCTTTTAGCAAATGA

Protein sequence

MSHNGEAISPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQEQTLQEDEGIVVQERQVERRWRGRNNHATIMQSRRMERVHEDRDGGVKLKIPPFCGTADSEAYLQWERKIEHVFDCNTYSENKKMRLAIAEFTNYVGDWYQHLKSERRRKEEHPIETWEELKEAMRKRYVPKHYERNLKTKLQGLRQETKSVAEYYLEKTMMEIANVREVEEDIMYRFIGGLNREIAHLVDRNPPPNLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVDRNGSLSPKEKFVAAKRVEAESSNGKKNETSKTVKEKSSSIQCWKCKGFGHMSKECVNKNVIVIRNGILDSDDECEDHDSQLVEEIAAYDDEYVEEGNFISLITALLALSAYHLSLHPFSK

Homology

[Close]

BLAST of CmaCh00G002450 vs. ExPASy TrEMBL
Match: A0A6J1EVI6 (LOW QUALITY PROTEIN: uncharacterized protein LOC111438459 OS=Cucurbita moschata OX=3662 GN=LOC111438459 PE=4 SV=1)

HSP 1 Score: 582.8 bits (1501), Expect = 1.1e-162
Identity = 315/389 (80.98%), Postives = 326/389 (83.80%), Query Frame = 0


Query: 1   MSHNGEAISPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQEQTLQEDEGIVVQERQV 60
           MSHNGEA+ PVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQE+T              
Sbjct: 1   MSHNGEAVPPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQERT-------------- 60

Query: 61  ERRWRGRNNHATIMQSRRMERVHEDRDGGVKLKIPPFCGTADSEAYLQWERKIEHVFDCN 120
                           RRMERVHEDRDGGVKLKIPPFC TADSEAYLQWERKIEHVFDCN
Sbjct: 61  ---------------PRRMERVHEDRDGGVKLKIPPFCVTADSEAYLQWERKIEHVFDCN 120

Query: 121 TYSENKKMRLAIAEFTNYVGDWYQHLKSERRRKEEHPIETWEELKEAMRKRYVPKHYERN 180
           TYSENKKMRLAIAEFTN+   WYQHLKSERRRKEE P+ETWEELKEAMRKRYVPKHYERN
Sbjct: 121 TYSENKKMRLAIAEFTNH-AXWYQHLKSERRRKEEDPVETWEELKEAMRKRYVPKHYERN 180

Query: 181 LKTKLQGLRQETKSVAEYYLE-KTMMEIANVREVEEDIMYRFIGGLNREIAHLVDRNPPP 240
           LKTKLQGLRQ TKSVAEYY E +TMME ANVRE EED M RF+GGLNREIAHLVDRNPPP
Sbjct: 181 LKTKLQGLRQGTKSVAEYYQEMETMMERANVREEEEDTMSRFLGGLNREIAHLVDRNPPP 240

Query: 241 NLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVDRNGSLSPKEKFVAA 300
            LEDM HYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFV+RN S+SPKEKFVAA
Sbjct: 241 YLEDMCHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSPKEKFVAA 300

Query: 301 KRVEAESSNGKKNETSKTVKEKSSSIQCWKCKGFGHMSKECVNKNVIVIRNGILDSDDEC 360
           KRVEAESSN KKNE SKTV+EKSSSIQCWKCKGFGHMSKECVNK V+VIRNGILDSDDE 
Sbjct: 301 KRVEAESSNCKKNEASKTVQEKSSSIQCWKCKGFGHMSKECVNKKVMVIRNGILDSDDE- 346

Query: 361 EDHDSQLVEEIAAYDDEYVEEGNFISLIT 389
                       +YDDEYVEEGN ISLIT
Sbjct: 361 ------------SYDDEYVEEGNSISLIT 346

[Close]

BLAST of CmaCh00G002450 vs. ExPASy TrEMBL
Match: A0A5D3DRJ1 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00130 PE=4 SV=1)

HSP 1 Score: 541.6 bits (1394), Expect = 2.8e-150
Identity = 284/397 (71.54%), Postives = 331/397 (83.38%), Query Frame = 0


Query: 1   MSHNGEAISPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQEQTLQEDEGIV---VQE 60
           MSH+GE +  V D N  ILQAIQGM+E+M E+RQERRAQQQR+ +  QEDEG+      E
Sbjct: 1   MSHDGEEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRPFQEDEGMFDLNAHE 60

Query: 61  RQV----ERRWRGRNNHATIMQSRRMERVHEDRDGGVKLKIPPFCGTADSEAYLQWERKI 120
           RQ+      R RGRNN A +MQ RRMERVHEDRDGGVKLKIPPF GTADSE YLQWERKI
Sbjct: 61  RQLGGRGNVRGRGRNNLANVMQPRRMERVHEDRDGGVKLKIPPFTGTADSETYLQWERKI 120

Query: 121 EHVFDCNTYSENKKMRLAIAEFTNYVGDWYQHLKSERRRKEEHPIETWEELKEAMRKRYV 180
           EHVFDCNT+SENKKM+LAIAEFTNY  +WY +LKSERRRKEE PIETWEELKEAMRKR+V
Sbjct: 121 EHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSERRRKEEDPIETWEELKEAMRKRFV 180

Query: 181 PKHYERNLKTKLQGLRQETKSVAEYYLE-KTMMEIANVREVEEDIMYRFIGGLNREIAHL 240
           PKHYER+LKTKLQ LRQ TKSVAEYY E +T++  A ++E EED M RF+GGLN+EIAHL
Sbjct: 181 PKHYERDLKTKLQSLRQGTKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHL 240

Query: 241 VDRNPPPNLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVDRNGSLSP 300
           VDRNPP N+EDMYHYA+KIE QLKEEKE SKRY S+T+TFS+S TWNKD FV+RN S+  
Sbjct: 241 VDRNPPYNMEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNTWNKDGFVNRNESMQS 300

Query: 301 KEKFVAAKRVEAESSNGKKNETSKTVKEKSSSIQCWKCKGFGHMSKECVNKNVIVIRNGI 360
           + KFVAA++VE ESSN KK E SK V+EK+SSIQCWKCKGFGHMSK+C+NK V+V+RNG+
Sbjct: 301 RGKFVAAQKVETESSNTKKFEASKEVREKTSSIQCWKCKGFGHMSKDCINKRVMVVRNGV 360

Query: 361 LDSDDECEDHDSQLVEEI-AAYDDEYVEEGNFISLIT 389
           +DS+DECE++D+QL EE     DDEY+EEG+ ISLIT
Sbjct: 361 IDSEDECEENDAQLEEEYETPVDDEYIEEGSSISLIT 397

[Close]

BLAST of CmaCh00G002450 vs. ExPASy TrEMBL
Match: A0A5D3C3D3 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001490 PE=4 SV=1)

HSP 1 Score: 541.6 bits (1394), Expect = 2.8e-150
Identity = 284/397 (71.54%), Postives = 331/397 (83.38%), Query Frame = 0


Query: 1   MSHNGEAISPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQEQTLQEDEGIV---VQE 60
           MSH+GE +  V D N  ILQAIQGM+E+M E+RQERRAQQQR+ +  QEDEG+      E
Sbjct: 1   MSHDGEEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRPFQEDEGMFDLNAHE 60

Query: 61  RQV----ERRWRGRNNHATIMQSRRMERVHEDRDGGVKLKIPPFCGTADSEAYLQWERKI 120
           RQ+      R RGRNN A +MQ RRMERVHEDRDGGVKLKIPPF GTADSE YLQWERKI
Sbjct: 61  RQLGGRGNVRGRGRNNLANVMQPRRMERVHEDRDGGVKLKIPPFTGTADSETYLQWERKI 120

Query: 121 EHVFDCNTYSENKKMRLAIAEFTNYVGDWYQHLKSERRRKEEHPIETWEELKEAMRKRYV 180
           EHVFDCNT+SENKKM+LAIAEFTNY  +WY +LKSERRRKEE PIETWEELKEAMRKR+V
Sbjct: 121 EHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSERRRKEEDPIETWEELKEAMRKRFV 180

Query: 181 PKHYERNLKTKLQGLRQETKSVAEYYLE-KTMMEIANVREVEEDIMYRFIGGLNREIAHL 240
           PKHYER+LKTKLQ LRQ TKSVAEYY E +T++  A ++E EED M RF+GGLN+EIAHL
Sbjct: 181 PKHYERDLKTKLQSLRQGTKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHL 240

Query: 241 VDRNPPPNLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVDRNGSLSP 300
           VDRNPP N+EDMYHYA+KIE QLKEEKE SKRY S+T+TFS+S TWNKD FV+RN S+  
Sbjct: 241 VDRNPPYNMEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNTWNKDGFVNRNESMQS 300

Query: 301 KEKFVAAKRVEAESSNGKKNETSKTVKEKSSSIQCWKCKGFGHMSKECVNKNVIVIRNGI 360
           + KFVAA++VE ESSN KK E SK V+EK+SSIQCWKCKGFGHMSK+C+NK V+V+RNG+
Sbjct: 301 RGKFVAAQKVETESSNTKKFEASKEVREKTSSIQCWKCKGFGHMSKDCINKRVMVVRNGV 360

Query: 361 LDSDDECEDHDSQLVEEI-AAYDDEYVEEGNFISLIT 389
           +DS+DECE++D+QL EE     DDEY+EEG+ ISLIT
Sbjct: 361 IDSEDECEENDAQLEEEYETPVDDEYIEEGSSISLIT 397

[Close]

BLAST of CmaCh00G002450 vs. ExPASy TrEMBL
Match: A0A5D3CK70 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00110 PE=4 SV=1)

HSP 1 Score: 541.6 bits (1394), Expect = 2.8e-150
Identity = 284/397 (71.54%), Postives = 331/397 (83.38%), Query Frame = 0


Query: 1   MSHNGEAISPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQEQTLQEDEGIV---VQE 60
           MSH+GE +  V D N  ILQAIQGM+E+M E+RQERRAQQQR+ +  QEDEG+      E
Sbjct: 1   MSHDGEEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRPFQEDEGMFDLNAHE 60

Query: 61  RQV----ERRWRGRNNHATIMQSRRMERVHEDRDGGVKLKIPPFCGTADSEAYLQWERKI 120
           RQ+      R RGRNN A +MQ RRMERVHEDRDGGVKLKIPPF GTADSE YLQWERKI
Sbjct: 61  RQLGGRGNVRGRGRNNLANVMQPRRMERVHEDRDGGVKLKIPPFTGTADSETYLQWERKI 120

Query: 121 EHVFDCNTYSENKKMRLAIAEFTNYVGDWYQHLKSERRRKEEHPIETWEELKEAMRKRYV 180
           EHVFDCNT+SENKKM+LAIAEFTNY  +WY +LKSERRRKEE PIETWEELKEAMRKR+V
Sbjct: 121 EHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSERRRKEEDPIETWEELKEAMRKRFV 180

Query: 181 PKHYERNLKTKLQGLRQETKSVAEYYLE-KTMMEIANVREVEEDIMYRFIGGLNREIAHL 240
           PKHYER+LKTKLQ LRQ TKSVAEYY E +T++  A ++E EED M RF+GGLN+EIAHL
Sbjct: 181 PKHYERDLKTKLQSLRQGTKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHL 240

Query: 241 VDRNPPPNLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVDRNGSLSP 300
           VDRNPP N+EDMYHYA+KIE QLKEEKE SKRY S+T+TFS+S TWNKD FV+RN S+  
Sbjct: 241 VDRNPPYNMEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNTWNKDGFVNRNESMQS 300

Query: 301 KEKFVAAKRVEAESSNGKKNETSKTVKEKSSSIQCWKCKGFGHMSKECVNKNVIVIRNGI 360
           + KFVAA++VE ESSN KK E SK V+EK+SSIQCWKCKGFGHMSK+C+NK V+V+RNG+
Sbjct: 301 RGKFVAAQKVETESSNTKKFEASKEVREKTSSIQCWKCKGFGHMSKDCINKRVMVVRNGV 360

Query: 361 LDSDDECEDHDSQLVEEI-AAYDDEYVEEGNFISLIT 389
           +DS+DECE++D+QL EE     DDEY+EEG+ ISLIT
Sbjct: 361 IDSEDECEENDAQLEEEYETPVDDEYIEEGSSISLIT 397

[Close]

BLAST of CmaCh00G002450 vs. ExPASy TrEMBL
Match: A0A5D3BWE8 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00600 PE=4 SV=1)

HSP 1 Score: 541.6 bits (1394), Expect = 2.8e-150
Identity = 284/397 (71.54%), Postives = 331/397 (83.38%), Query Frame = 0


Query: 1   MSHNGEAISPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQEQTLQEDEGIV---VQE 60
           MSH+GE +  V D N  ILQAIQGM+E+M E+RQERRAQQQR+ +  QEDEG+      E
Sbjct: 1   MSHDGEEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRPFQEDEGMFDLNAHE 60

Query: 61  RQV----ERRWRGRNNHATIMQSRRMERVHEDRDGGVKLKIPPFCGTADSEAYLQWERKI 120
           RQ+      R RGRNN A +MQ RRMERVHEDRDGGVKLKIPPF GTADSE YLQWERKI
Sbjct: 61  RQLGGRGNVRGRGRNNLANVMQPRRMERVHEDRDGGVKLKIPPFTGTADSETYLQWERKI 120

Query: 121 EHVFDCNTYSENKKMRLAIAEFTNYVGDWYQHLKSERRRKEEHPIETWEELKEAMRKRYV 180
           EHVFDCNT+SENKKM+LAIAEFTNY  +WY +LKSERRRKEE PIETWEELKEAMRKR+V
Sbjct: 121 EHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSERRRKEEDPIETWEELKEAMRKRFV 180

Query: 181 PKHYERNLKTKLQGLRQETKSVAEYYLE-KTMMEIANVREVEEDIMYRFIGGLNREIAHL 240
           PKHYER+LKTKLQ LRQ TKSVAEYY E +T++  A ++E EED M RF+GGLN+EIAHL
Sbjct: 181 PKHYERDLKTKLQSLRQGTKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHL 240

Query: 241 VDRNPPPNLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVDRNGSLSP 300
           VDRNPP N+EDMYHYA+KIE QLKEEKE SKRY S+T+TFS+S TWNKD FV+RN S+  
Sbjct: 241 VDRNPPYNMEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNTWNKDGFVNRNESMQS 300

Query: 301 KEKFVAAKRVEAESSNGKKNETSKTVKEKSSSIQCWKCKGFGHMSKECVNKNVIVIRNGI 360
           + KFVAA++VE ESSN KK E SK V+EK+SSIQCWKCKGFGHMSK+C+NK V+V+RNG+
Sbjct: 301 RGKFVAAQKVETESSNTKKFEASKEVREKTSSIQCWKCKGFGHMSKDCINKRVMVVRNGV 360

Query: 361 LDSDDECEDHDSQLVEEI-AAYDDEYVEEGNFISLIT 389
           +DS+DECE++D+QL EE     DDEY+EEG+ ISLIT
Sbjct: 361 IDSEDECEENDAQLEEEYETPVDDEYIEEGSSISLIT 397

[Close]

BLAST of CmaCh00G002450 vs. NCBI nr
Match: XP_022932136.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111438459, partial [Cucurbita moschata])

HSP 1 Score: 582.8 bits (1501), Expect = 2.3e-162
Identity = 315/389 (80.98%), Postives = 326/389 (83.80%), Query Frame = 0


Query: 1   MSHNGEAISPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQEQTLQEDEGIVVQERQV 60
           MSHNGEA+ PVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQE+T              
Sbjct: 1   MSHNGEAVPPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQERT-------------- 60

Query: 61  ERRWRGRNNHATIMQSRRMERVHEDRDGGVKLKIPPFCGTADSEAYLQWERKIEHVFDCN 120
                           RRMERVHEDRDGGVKLKIPPFC TADSEAYLQWERKIEHVFDCN
Sbjct: 61  ---------------PRRMERVHEDRDGGVKLKIPPFCVTADSEAYLQWERKIEHVFDCN 120

Query: 121 TYSENKKMRLAIAEFTNYVGDWYQHLKSERRRKEEHPIETWEELKEAMRKRYVPKHYERN 180
           TYSENKKMRLAIAEFTN+   WYQHLKSERRRKEE P+ETWEELKEAMRKRYVPKHYERN
Sbjct: 121 TYSENKKMRLAIAEFTNH-AXWYQHLKSERRRKEEDPVETWEELKEAMRKRYVPKHYERN 180

Query: 181 LKTKLQGLRQETKSVAEYYLE-KTMMEIANVREVEEDIMYRFIGGLNREIAHLVDRNPPP 240
           LKTKLQGLRQ TKSVAEYY E +TMME ANVRE EED M RF+GGLNREIAHLVDRNPPP
Sbjct: 181 LKTKLQGLRQGTKSVAEYYQEMETMMERANVREEEEDTMSRFLGGLNREIAHLVDRNPPP 240

Query: 241 NLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVDRNGSLSPKEKFVAA 300
            LEDM HYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFV+RN S+SPKEKFVAA
Sbjct: 241 YLEDMCHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSPKEKFVAA 300

Query: 301 KRVEAESSNGKKNETSKTVKEKSSSIQCWKCKGFGHMSKECVNKNVIVIRNGILDSDDEC 360
           KRVEAESSN KKNE SKTV+EKSSSIQCWKCKGFGHMSKECVNK V+VIRNGILDSDDE 
Sbjct: 301 KRVEAESSNCKKNEASKTVQEKSSSIQCWKCKGFGHMSKECVNKKVMVIRNGILDSDDE- 346

Query: 361 EDHDSQLVEEIAAYDDEYVEEGNFISLIT 389
                       +YDDEYVEEGN ISLIT
Sbjct: 361 ------------SYDDEYVEEGNSISLIT 346

[Close]

BLAST of CmaCh00G002450 vs. NCBI nr
Match: TYK22420.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 541.6 bits (1394), Expect = 5.9e-150
Identity = 284/397 (71.54%), Postives = 331/397 (83.38%), Query Frame = 0


Query: 1   MSHNGEAISPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQEQTLQEDEGIV---VQE 60
           MSH+GE +  V D N  ILQAIQGM+E+M E+RQERRAQQQR+ +  QEDEG+      E
Sbjct: 1   MSHDGEEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRPFQEDEGMFDLNAHE 60

Query: 61  RQV----ERRWRGRNNHATIMQSRRMERVHEDRDGGVKLKIPPFCGTADSEAYLQWERKI 120
           RQ+      R RGRNN A +MQ RRMERVHEDRDGGVKLKIPPF GTADSE YLQWERKI
Sbjct: 61  RQLGGRGNVRGRGRNNLANVMQPRRMERVHEDRDGGVKLKIPPFTGTADSETYLQWERKI 120

Query: 121 EHVFDCNTYSENKKMRLAIAEFTNYVGDWYQHLKSERRRKEEHPIETWEELKEAMRKRYV 180
           EHVFDCNT+SENKKM+LAIAEFTNY  +WY +LKSERRRKEE PIETWEELKEAMRKR+V
Sbjct: 121 EHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSERRRKEEDPIETWEELKEAMRKRFV 180

Query: 181 PKHYERNLKTKLQGLRQETKSVAEYYLE-KTMMEIANVREVEEDIMYRFIGGLNREIAHL 240
           PKHYER+LKTKLQ LRQ TKSVAEYY E +T++  A ++E EED M RF+GGLN+EIAHL
Sbjct: 181 PKHYERDLKTKLQSLRQGTKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHL 240

Query: 241 VDRNPPPNLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVDRNGSLSP 300
           VDRNPP N+EDMYHYA+KIE QLKEEKE SKRY S+T+TFS+S TWNKD FV+RN S+  
Sbjct: 241 VDRNPPYNMEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNTWNKDGFVNRNESMQS 300

Query: 301 KEKFVAAKRVEAESSNGKKNETSKTVKEKSSSIQCWKCKGFGHMSKECVNKNVIVIRNGI 360
           + KFVAA++VE ESSN KK E SK V+EK+SSIQCWKCKGFGHMSK+C+NK V+V+RNG+
Sbjct: 301 RGKFVAAQKVETESSNTKKFEASKEVREKTSSIQCWKCKGFGHMSKDCINKRVMVVRNGV 360

Query: 361 LDSDDECEDHDSQLVEEI-AAYDDEYVEEGNFISLIT 389
           +DS+DECE++D+QL EE     DDEY+EEG+ ISLIT
Sbjct: 361 IDSEDECEENDAQLEEEYETPVDDEYIEEGSSISLIT 397

[Close]

BLAST of CmaCh00G002450 vs. NCBI nr
Match: TYK26105.1 (F15O4.13 [Cucumis melo var. makuwa])

HSP 1 Score: 541.6 bits (1394), Expect = 5.9e-150
Identity = 284/397 (71.54%), Postives = 331/397 (83.38%), Query Frame = 0


Query: 1   MSHNGEAISPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQEQTLQEDEGIV---VQE 60
           MSH+GE +  V D N  ILQAIQGM+E+M E+RQERRAQQQR+ +  QEDEG+      E
Sbjct: 1   MSHDGEEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRPFQEDEGMFDLNAHE 60

Query: 61  RQV----ERRWRGRNNHATIMQSRRMERVHEDRDGGVKLKIPPFCGTADSEAYLQWERKI 120
           RQ+      R RGRNN A +MQ RRMERVHEDRDGGVKLKIPPF GTADSE YLQWERKI
Sbjct: 61  RQLGGRGNVRGRGRNNLANVMQPRRMERVHEDRDGGVKLKIPPFTGTADSETYLQWERKI 120

Query: 121 EHVFDCNTYSENKKMRLAIAEFTNYVGDWYQHLKSERRRKEEHPIETWEELKEAMRKRYV 180
           EHVFDCNT+SENKKM+LAIAEFTNY  +WY +LKSERRRKEE PIETWEELKEAMRKR+V
Sbjct: 121 EHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSERRRKEEDPIETWEELKEAMRKRFV 180

Query: 181 PKHYERNLKTKLQGLRQETKSVAEYYLE-KTMMEIANVREVEEDIMYRFIGGLNREIAHL 240
           PKHYER+LKTKLQ LRQ TKSVAEYY E +T++  A ++E EED M RF+GGLN+EIAHL
Sbjct: 181 PKHYERDLKTKLQSLRQGTKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHL 240

Query: 241 VDRNPPPNLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVDRNGSLSP 300
           VDRNPP N+EDMYHYA+KIE QLKEEKE SKRY S+T+TFS+S TWNKD FV+RN S+  
Sbjct: 241 VDRNPPYNMEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNTWNKDGFVNRNESMQS 300

Query: 301 KEKFVAAKRVEAESSNGKKNETSKTVKEKSSSIQCWKCKGFGHMSKECVNKNVIVIRNGI 360
           + KFVAA++VE ESSN KK E SK V+EK+SSIQCWKCKGFGHMSK+C+NK V+V+RNG+
Sbjct: 301 RGKFVAAQKVETESSNTKKFEASKEVREKTSSIQCWKCKGFGHMSKDCINKRVMVVRNGV 360

Query: 361 LDSDDECEDHDSQLVEEI-AAYDDEYVEEGNFISLIT 389
           +DS+DECE++D+QL EE     DDEY+EEG+ ISLIT
Sbjct: 361 IDSEDECEENDAQLEEEYETPVDDEYIEEGSSISLIT 397

[Close]

BLAST of CmaCh00G002450 vs. NCBI nr
Match: TYK02449.1 (F15O4.13 [Cucumis melo var. makuwa])

HSP 1 Score: 541.6 bits (1394), Expect = 5.9e-150
Identity = 284/397 (71.54%), Postives = 331/397 (83.38%), Query Frame = 0


Query: 1   MSHNGEAISPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQEQTLQEDEGIV---VQE 60
           MSH+GE +  V D N  ILQAIQGM+E+M E+RQERRAQQQR+ +  QEDEG+      E
Sbjct: 1   MSHDGEEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRPFQEDEGMFDLNAHE 60

Query: 61  RQV----ERRWRGRNNHATIMQSRRMERVHEDRDGGVKLKIPPFCGTADSEAYLQWERKI 120
           RQ+      R RGRNN A +MQ RRMERVHEDRDGGVKLKIPPF GTADSE YLQWERKI
Sbjct: 61  RQLGGRGNVRGRGRNNLANVMQPRRMERVHEDRDGGVKLKIPPFTGTADSETYLQWERKI 120

Query: 121 EHVFDCNTYSENKKMRLAIAEFTNYVGDWYQHLKSERRRKEEHPIETWEELKEAMRKRYV 180
           EHVFDCNT+SENKKM+LAIAEFTNY  +WY +LKSERRRKEE PIETWEELKEAMRKR+V
Sbjct: 121 EHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSERRRKEEDPIETWEELKEAMRKRFV 180

Query: 181 PKHYERNLKTKLQGLRQETKSVAEYYLE-KTMMEIANVREVEEDIMYRFIGGLNREIAHL 240
           PKHYER+LKTKLQ LRQ TKSVAEYY E +T++  A ++E EED M RF+GGLN+EIAHL
Sbjct: 181 PKHYERDLKTKLQSLRQGTKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHL 240

Query: 241 VDRNPPPNLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVDRNGSLSP 300
           VDRNPP N+EDMYHYA+KIE QLKEEKE SKRY S+T+TFS+S TWNKD FV+RN S+  
Sbjct: 241 VDRNPPYNMEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNTWNKDGFVNRNESMQS 300

Query: 301 KEKFVAAKRVEAESSNGKKNETSKTVKEKSSSIQCWKCKGFGHMSKECVNKNVIVIRNGI 360
           + KFVAA++VE ESSN KK E SK V+EK+SSIQCWKCKGFGHMSK+C+NK V+V+RNG+
Sbjct: 301 RGKFVAAQKVETESSNTKKFEASKEVREKTSSIQCWKCKGFGHMSKDCINKRVMVVRNGV 360

Query: 361 LDSDDECEDHDSQLVEEI-AAYDDEYVEEGNFISLIT 389
           +DS+DECE++D+QL EE     DDEY+EEG+ ISLIT
Sbjct: 361 IDSEDECEENDAQLEEEYETPVDDEYIEEGSSISLIT 397

[Close]

BLAST of CmaCh00G002450 vs. NCBI nr
Match: TYK11702.1 (F15O4.13 [Cucumis melo var. makuwa])

HSP 1 Score: 541.6 bits (1394), Expect = 5.9e-150
Identity = 284/397 (71.54%), Postives = 331/397 (83.38%), Query Frame = 0


Query: 1   MSHNGEAISPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQEQTLQEDEGIV---VQE 60
           MSH+GE +  V D N  ILQAIQGM+E+M E+RQERRAQQQR+ +  QEDEG+      E
Sbjct: 1   MSHDGEEVPEVIDPNVAILQAIQGMLELMREERQERRAQQQREVRPFQEDEGMFDLNAHE 60

Query: 61  RQV----ERRWRGRNNHATIMQSRRMERVHEDRDGGVKLKIPPFCGTADSEAYLQWERKI 120
           RQ+      R RGRNN A +MQ RRMERVHEDRDGGVKLKIPPF GTADSE YLQWERKI
Sbjct: 61  RQLGGRGNVRGRGRNNLANVMQPRRMERVHEDRDGGVKLKIPPFTGTADSETYLQWERKI 120

Query: 121 EHVFDCNTYSENKKMRLAIAEFTNYVGDWYQHLKSERRRKEEHPIETWEELKEAMRKRYV 180
           EHVFDCNT+SENKKM+LAIAEFTNY  +WY +LKSERRRKEE PIETWEELKEAMRKR+V
Sbjct: 121 EHVFDCNTFSENKKMKLAIAEFTNYASEWYHYLKSERRRKEEDPIETWEELKEAMRKRFV 180

Query: 181 PKHYERNLKTKLQGLRQETKSVAEYYLE-KTMMEIANVREVEEDIMYRFIGGLNREIAHL 240
           PKHYER+LKTKLQ LRQ TKSVAEYY E +T++  A ++E EED M RF+GGLN+EIAHL
Sbjct: 181 PKHYERDLKTKLQSLRQGTKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHL 240

Query: 241 VDRNPPPNLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVDRNGSLSP 300
           VDRNPP N+EDMYHYA+KIE QLKEEKE SKRY S+T+TFS+S TWNKD FV+RN S+  
Sbjct: 241 VDRNPPYNMEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNTWNKDGFVNRNESMQS 300

Query: 301 KEKFVAAKRVEAESSNGKKNETSKTVKEKSSSIQCWKCKGFGHMSKECVNKNVIVIRNGI 360
           + KFVAA++VE ESSN KK E SK V+EK+SSIQCWKCKGFGHMSK+C+NK V+V+RNG+
Sbjct: 301 RGKFVAAQKVETESSNTKKFEASKEVREKTSSIQCWKCKGFGHMSKDCINKRVMVVRNGV 360

Query: 361 LDSDDECEDHDSQLVEEI-AAYDDEYVEEGNFISLIT 389
           +DS+DECE++D+QL EE     DDEY+EEG+ ISLIT
Sbjct: 361 IDSEDECEENDAQLEEEYETPVDDEYIEEGSSISLIT 397

The following BLAST results are available for this feature:

BLAST of CmaCh00G002450 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh00G002450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EVI6	1.1e-162	80.98	LOW QUALITY PROTEIN: uncharacterized protein LOC111438459 OS=Cucurbita moschata ...	[more]
A0A5D3DRJ1	2.8e-150	71.54	F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00130 PE=4 ...	[more]
A0A5D3C3D3	2.8e-150	71.54	F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001490 PE=4...	[more]
A0A5D3CK70	2.8e-150	71.54	F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00110 PE=4 ...	[more]
A0A5D3BWE8	2.8e-150	71.54	F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00600 PE=4...	[more]

BLAST of CmaCh00G002450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932136.1	2.3e-162	80.98	LOW QUALITY PROTEIN: uncharacterized protein LOC111438459, partial [Cucurbita mo...	[more]
TYK22420.1	5.9e-150	71.54	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK26105.1	5.9e-150	71.54	F15O4.13 [Cucumis melo var. makuwa]	[more]
TYK02449.1	5.9e-150	71.54	F15O4.13 [Cucumis melo var. makuwa]	[more]
TYK11702.1	5.9e-150	71.54	F15O4.13 [Cucumis melo var. makuwa]	[more]

BLAST of CmaCh00G002450 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 30..50
None	No IPR available	GENE3D	4.10.60.10		coord: 301..361 e-value: 2.3E-5 score: 26.0
None	No IPR available	PANTHER	PTHR35046:SF6	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 34..382
None	No IPR available	PANTHER	PTHR35046	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 34..382
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 326..342 e-value: 0.0061 score: 24.9
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 327..340 score: 8.845061
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 134..227 e-value: 2.7E-15 score: 56.4
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 320..343

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G002450.1	CmaCh00G002450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding