CmaCh00G002330 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G002330
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic
Location	Cma_Chr00: 16734263 .. 16735733 (-)
RNA-Seq Expression	CmaCh00G002330
Synteny	CmaCh00G002330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCTACTTTATGAATATGATATTTTCTGGGTATTTCTAATAATATCAAGTGTTATTCTGATTTTGTCATTTCTTATTTCTGGAGTTTTAGCCCCTCTTAGCAAAGAGCCAGAGAAACTTTTTAGTTATGAATCGGGAATAGAACCAACGGGCGATGCTTGGGTACAATTTCAAATTCGTTATTATATATTTGCTAATGTTTTTGTTACGAATAGTGGACAAATTGATGTATTACAAATCTTAATTGTATTTACATTTCATTTTAATATTGATATCCATTTCTAGAAATATTATTTACTTTGTTTAATATATTTATATTTAGTATTTTCTAAAAATTATATATTCTATTTAATAAATGAAAAGAATGAAATTATTTCATGTTTAAATTTTAACATTTTCAAGTTATAAAATTTATTTATACTGTACTTGTTTTCTTTTATACTTGGTCTTGAAGTAGAAAACGTTCCATCTATTCCTGAATAGCTTCTTTCAAAAGGGCTTCCGCTTCAGGGGTAAATGTCTTGGTGGAAGATATTATTTCTTGAAACTGAGGTTTATTCGTTTTTACGTAAGTACGTAACTCAACGAGAAATTTTCTTACTTGTTCAATTTCTAATGAATCAAGATAACCATTCGTTCCGGTATAAATAGTCATTAACTTTTCTTCTACCGTGAGAGGGGTTGATTGGGATTGTTTCACGTAATCGTTGACCTCTTGCCAATTGATTTTGAGTAGCTTTATCGAGATCAGAAACGAATTGCGCAAAGGCTTCTAATTCGACAAATTGAGCCAATTCCCATTTTGATTTTCCGGCTATTTGTTTAATGGCTTTAATTTGAGCTGCAGATCCTACTCTGGAGACGGAAATACCCACATTAATAGCAGGTCTGATTCCAGCATTGAATAGATACCCAGATAAGAATATTTGTCCATCAGTAATGGAAATTACATTAGTAGGAATATAAGCTGAAACATCTCCCGATTGGGTCTCAACTATTGGTAAAGCAGTCATACTTCCTTCACCTAAAGCAGAACTTGATTTAGCGGCTCTTTCCAAAAGGCGTGAATTCAAATAAAAAACATCTCCCGGATAAGATTCGCGGCCGAGCGGTCTTCGTAAAAGAAGAGACATTTGTCGATAAGCTTGTGCTTGTTTGGAGGGATCATCATAAATGATTAAAGTGTGTTGTTTTCTGTACATAAAATATTCAGCCAAAGCTGCTCCTGTATAAGGAGCAAGGTATTGTAATGTAGCTGGAGAATCAGCCATTTAGCCTACTATAATAGTGTATTCCATTGCCCCCCTTTCCTGTAAAGTAGTAACTACTTAGCCAGTAACTATTTAGCCACAGAAGAGGCTTTTTGACCAATAGCTACATAAACACATATTACATTTTGCCCTTGTTGATTTAGAATCATATCCGTGGCTACTGCAGTTTTACGGTTCTGCCTGTCCCCAATAATTAA

mRNA sequence

ATGTTTCTACTTTATGAATATGATATTTTCTGGGTATTTCTAATAATATCAAGTGTTATTCTGATTTTGTCATTTCTTATTTCTGGAGTTTTAGCCCCTCTTAGCAAAGAGCCAGAGAAACTTTTTAGTTATGAATCGGGAATAGAACCAACGGGCGATGCTTGGGTACAATTTCAAATTCGTTATTATATATTTGCTAATGTTTTTGTTACGAATAGTGGACAAATTGATAAAACGTTCCATCTATTCCTGAATAGCTTCTTTCAAAAGGGCTTCCGCTTCAGGGGTAAATGTCTTGGTGGAAGATATTATTTCTTGAAACTGAGGTTTATTCGTTTTTACAATCATATCCGTGGCTACTGCAGTTTTACGGTTCTGCCTGTCCCCAATAATTAA

Coding sequence (CDS)

ATGTTTCTACTTTATGAATATGATATTTTCTGGGTATTTCTAATAATATCAAGTGTTATTCTGATTTTGTCATTTCTTATTTCTGGAGTTTTAGCCCCTCTTAGCAAAGAGCCAGAGAAACTTTTTAGTTATGAATCGGGAATAGAACCAACGGGCGATGCTTGGGTACAATTTCAAATTCGTTATTATATATTTGCTAATGTTTTTGTTACGAATAGTGGACAAATTGATAAAACGTTCCATCTATTCCTGAATAGCTTCTTTCAAAAGGGCTTCCGCTTCAGGGGTAAATGTCTTGGTGGAAGATATTATTTCTTGAAACTGAGGTTTATTCGTTTTTACAATCATATCCGTGGCTACTGCAGTTTTACGGTTCTGCCTGTCCCCAATAATTAA

Protein sequence

MFLLYEYDIFWVFLIISSVILILSFLISGVLAPLSKEPEKLFSYESGIEPTGDAWVQFQIRYYIFANVFVTNSGQIDKTFHLFLNSFFQKGFRFRGKCLGGRYYFLKLRFIRFYNHIRGYCSFTVLPVPNN

Homology

[Close]

BLAST of CmaCh00G002330 vs. ExPASy Swiss-Prot
Match: Q4VZH0 (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhC PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 5.2e-26
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MFLLYEYDIFWVFLIISSVILILSFLISGVLAPLSKEPEKLFSYESGIEPTGDAWVQFQI 60
          MFLLYEYDIFWVFLIISSVI IL+FLISGVLAPLSKEPEKL SYESGIEP GDAWVQF+I
Sbjct: 1  MFLLYEYDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60

Query: 61 RYYIFANVFV 71
          RYY+FA VFV
Sbjct: 61 RYYMFALVFV 70

[Close]

BLAST of CmaCh00G002330 vs. ExPASy Swiss-Prot
Match: A9L9A1 (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Lemna minor OX=4472 GN=ndhC PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 6.4e-24
Identity = 58/70 (82.86%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1  MFLLYEYDIFWVFLIISSVILILSFLISGVLAPLSKEPEKLFSYESGIEPTGDAWVQFQI 60
          MFLLYEYDIFW FL+ISSVI IL+F+ISGVLAPLS+ PEKL SYESGIEP GDAWVQF+I
Sbjct: 1  MFLLYEYDIFWAFLVISSVIPILAFIISGVLAPLSEGPEKLSSYESGIEPIGDAWVQFRI 60

Query: 61 RYYIFANVFV 71
          RYY+FA VFV
Sbjct: 61 RYYMFALVFV 70

[Close]

BLAST of CmaCh00G002330 vs. ExPASy Swiss-Prot
Match: Q06FV5 (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Pelargonium hortorum OX=4031 GN=ndhC PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 6.4e-24
Identity = 58/70 (82.86%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 1  MFLLYEYDIFWVFLIISSVILILSFLISGVLAPLSKEPEKLFSYESGIEPTGDAWVQFQI 60
          MFLLYEYD+FWVFLIISS+I IL+FLISGVLAP+S+ PEKL SYESGIEP GDAW+QF+I
Sbjct: 1  MFLLYEYDLFWVFLIISSLIPILAFLISGVLAPISEGPEKLSSYESGIEPMGDAWLQFRI 60

Query: 61 RYYIFANVFV 71
          RYYIFA VFV
Sbjct: 61 RYYIFALVFV 70

[Close]

BLAST of CmaCh00G002330 vs. ExPASy Swiss-Prot
Match: P52765 (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Lupinus luteus OX=3873 GN=ndhC PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-23
Identity = 57/70 (81.43%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1  MFLLYEYDIFWVFLIISSVILILSFLISGVLAPLSKEPEKLFSYESGIEPTGDAWVQFQI 60
          MFLLYEYDIFW FLIISS+I IL+FLISG+LAP+SK PEKL SYESGIEP GDAW+QF+I
Sbjct: 1  MFLLYEYDIFWAFLIISSLIPILAFLISGILAPISKGPEKLSSYESGIEPMGDAWLQFRI 60

Query: 61 RYYIFANVFV 71
          RYY+FA VFV
Sbjct: 61 RYYMFALVFV 70

[Close]

BLAST of CmaCh00G002330 vs. ExPASy Swiss-Prot
Match: Q0ZJ15 (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Vitis vinifera OX=29760 GN=ndhC PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-23
Identity = 58/70 (82.86%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1  MFLLYEYDIFWVFLIISSVILILSFLISGVLAPLSKEPEKLFSYESGIEPTGDAWVQFQI 60
          MFLLYEYDIFW FLIISSVI IL+F ISGVLAP+SK PEKL SYESGIEP GDAW+QF+I
Sbjct: 1  MFLLYEYDIFWAFLIISSVIPILAFFISGVLAPISKGPEKLSSYESGIEPMGDAWLQFRI 60

Query: 61 RYYIFANVFV 71
          RYY+FA VFV
Sbjct: 61 RYYMFALVFV 70

[Close]

BLAST of CmaCh00G002330 vs. ExPASy TrEMBL
Match: A0A0S2IFJ0 (NADH-quinone oxidoreductase subunit A OS=Cucurbita moschata OX=3662 GN=ndhC PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 8.6e-24
Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MFLLYEYDIFWVFLIISSVILILSFLISGVLAPLSKEPEKLFSYESGIEPTGDAWVQFQI 60
          MFLLYEYDIFWVFLIISSVI IL+FLISGVLAPLSKEPEKL SYESGIEP GDAWVQF+I
Sbjct: 1  MFLLYEYDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60

Query: 61 RYYIFANVFV 71
          RYYIFA VFV
Sbjct: 61 RYYIFALVFV 70

[Close]

BLAST of CmaCh00G002330 vs. ExPASy TrEMBL
Match: A0A0S2IED4 (NADH-quinone oxidoreductase subunit A OS=Cucurbita argyrosperma OX=34294 GN=ndhC PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 8.6e-24
Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MFLLYEYDIFWVFLIISSVILILSFLISGVLAPLSKEPEKLFSYESGIEPTGDAWVQFQI 60
          MFLLYEYDIFWVFLIISSVI IL+FLISGVLAPLSKEPEKL SYESGIEP GDAWVQF+I
Sbjct: 1  MFLLYEYDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60

Query: 61 RYYIFANVFV 71
          RYYIFA VFV
Sbjct: 61 RYYIFALVFV 70

[Close]

BLAST of CmaCh00G002330 vs. ExPASy TrEMBL
Match: A0A2H4T1Y6 (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=ndhC PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 8.6e-24
Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MFLLYEYDIFWVFLIISSVILILSFLISGVLAPLSKEPEKLFSYESGIEPTGDAWVQFQI 60
          MFLLYEYDIFWVFLIISSVI IL+FLISGVLAPLSKEPEKL SYESGIEP GDAWVQF+I
Sbjct: 1  MFLLYEYDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60

Query: 61 RYYIFANVFV 71
          RYYIFA VFV
Sbjct: 61 RYYIFALVFV 70

[Close]

BLAST of CmaCh00G002330 vs. ExPASy TrEMBL
Match: A0A0S2IGY5 (NADH-quinone oxidoreductase subunit A OS=Cucurbita pepo var. texana OX=37651 GN=ndhC PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 8.6e-24
Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MFLLYEYDIFWVFLIISSVILILSFLISGVLAPLSKEPEKLFSYESGIEPTGDAWVQFQI 60
          MFLLYEYDIFWVFLIISSVI IL+FLISGVLAPLSKEPEKL SYESGIEP GDAWVQF+I
Sbjct: 1  MFLLYEYDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60

Query: 61 RYYIFANVFV 71
          RYYIFA VFV
Sbjct: 61 RYYIFALVFV 70

[Close]

BLAST of CmaCh00G002330 vs. ExPASy TrEMBL
Match: A0A0S2IH51 (NADH-quinone oxidoreductase subunit A OS=Cucurbita pepo subsp. fraterna OX=37649 GN=ndhC PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 8.6e-24
Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MFLLYEYDIFWVFLIISSVILILSFLISGVLAPLSKEPEKLFSYESGIEPTGDAWVQFQI 60
          MFLLYEYDIFWVFLIISSVI IL+FLISGVLAPLSKEPEKL SYESGIEP GDAWVQF+I
Sbjct: 1  MFLLYEYDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60

Query: 61 RYYIFANVFV 71
          RYYIFA VFV
Sbjct: 61 RYYIFALVFV 70

[Close]

BLAST of CmaCh00G002330 vs. NCBI nr
Match: ALO22164.1 (NdhC [Cucurbita foetidissima] >ALO22875.1 NdhC [Cucurbita pedatifolia])

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-23
Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MFLLYEYDIFWVFLIISSVILILSFLISGVLAPLSKEPEKLFSYESGIEPTGDAWVQFQI 60
          MFLLYEYDIFWVFLIISSVI IL+FLISGVLAPLSKEPEKL SYESGIEP GDAWVQF+I
Sbjct: 1  MFLLYEYDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60

Query: 61 RYYIFANVFV 71
          RYYIFA VFV
Sbjct: 61 RYYIFALVFV 70

[Close]

BLAST of CmaCh00G002330 vs. NCBI nr
Match: YP_009560840.1 (NdhC [Trichosanthes kirilowii] >QAB33195.1 NdhC [Trichosanthes kirilowii])

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-23
Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MFLLYEYDIFWVFLIISSVILILSFLISGVLAPLSKEPEKLFSYESGIEPTGDAWVQFQI 60
          MFLLYEYDIFWVFLIISSVI ILSFLISGVLAPLSKEPEKL SYESGIEP GDAWVQF+I
Sbjct: 1  MFLLYEYDIFWVFLIISSVIPILSFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60

Query: 61 RYYIFANVFV 71
          RYY+FA VFV
Sbjct: 61 RYYMFALVFV 70

[Close]

BLAST of CmaCh00G002330 vs. NCBI nr
Match: YP_009447455.1 (NADH dehydrogenase subunit 3 [Cucurbita maxima] >YP_009447540.1 NADH dehydrogenase subunit 3 [Cucurbita moschata] >YP_009505085.1 NADH dehydrogenase subunit 3 [Cucurbita pepo] >ALO21719.1 NdhC [Cucurbita argyrosperma] >ALO21821.1 NdhC [Cucurbita argyrosperma var. palmeri] >ALO21844.1 NdhC [Cucurbita argyrosperma subsp. sororia] >ALO21931.1 NdhC [Cucurbita cordata] >ALO21996.1 NdhC [Cucurbita digitata] >ALO22029.1 NdhC [Cucurbita ecuadorensis] >ALO22102.1 NdhC [Cucurbita ficifolia] >ALO22216.1 NdhC [Cucurbita lundelliana] >ALO22339.1 NdhC [Cucurbita maxima subsp. andreana] >ALO22410.1 NdhC [Cucurbita okeechobeensis] >ALO22514.1 NdhC [Cucurbita okeechobeensis subsp. martinezii] >ALO22541.1 NdhC [Cucurbita pepo subsp. fraterna] >ALO22639.1 NdhC [Cucurbita pepo subsp. ovifera] >ALO22725.1 NdhC [Cucurbita pepo var. ozarkana] >ALO22763.1 NdhC [Cucurbita pepo subsp. pepo] >ALO22843.1 NdhC [Cucurbita pepo var. texana])

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-23
Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MFLLYEYDIFWVFLIISSVILILSFLISGVLAPLSKEPEKLFSYESGIEPTGDAWVQFQI 60
          MFLLYEYDIFWVFLIISSVI IL+FLISGVLAPLSKEPEKL SYESGIEP GDAWVQF+I
Sbjct: 1  MFLLYEYDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60

Query: 61 RYYIFANVFV 71
          RYYIFA VFV
Sbjct: 61 RYYIFALVFV 70

[Close]

BLAST of CmaCh00G002330 vs. NCBI nr
Match: YP_009751743.1 (NADH dehydrogenase subunit C [Herpetospermum pedunculosum] >QIT04476.1 NADH dehydrogenase subunit C [Herpetospermum pedunculosum] >QJR52961.1 NADH-plastoquinone oxidoreductase subunit 3 [Herpetospermum pedunculosum])

HSP 1 Score: 118.6 bits (296), Expect = 4.0e-23
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MFLLYEYDIFWVFLIISSVILILSFLISGVLAPLSKEPEKLFSYESGIEPTGDAWVQFQI 60
          MFLLYEYDIFWVFLIISSVI IL+FLISGVLAPLSKEPEKL SYESGIEP GDAWVQF+I
Sbjct: 1  MFLLYEYDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60

Query: 61 RYYIFANVFV 71
          RYY+FA VFV
Sbjct: 61 RYYMFALVFV 70

[Close]

BLAST of CmaCh00G002330 vs. NCBI nr
Match: YP_009004049.1 (NADH-plastoquinone oxidoreductase subunit 3 [Cucumis hystrix] >YP_009317391.1 NADH dehydrogenase subunit 3 [Coccinia grandis] >YP_009325994.1 NADH dehydrogenase subunit 3 [Citrullus lanatus] >YP_009346489.1 NADH-plastoquinone oxidoreductase subunit 3 [Cucumis x hytivus] >YP_009348036.1 NADH dehydrogenase subunit 3 [Citrullus mucosospermus] >YP_009420799.1 NADH dehydrogenase subunit 3 [Citrullus colocynthis] >YP_009431562.1 NADH dehydrogenase subunit 3 [Citrullus amarus] >YP_009431647.1 NADH dehydrogenase subunit 3 [Citrullus rehmii] >YP_009456066.1 NADH dehydrogenase subunit 3 [Momordica charantia] >YP_009456151.1 NADH dehydrogenase subunit 3 [Lagenaria siceraria] >YP_009751911.1 NADH dehydrogenase subunit C [Cyclanthera pedata] >YP_009751995.1 NADH dehydrogenase subunit C [Cionosicys macranthus] >YP_009752080.1 NADH dehydrogenase subunit C [Dendrosicyos socotranus] >YP_009752248.1 NADH dehydrogenase subunit C [Trichosanthes baviensis] >YP_009752332.1 NADH dehydrogenase subunit C [Bryonia marmorata] >YP_009752417.1 NADH dehydrogenase subunit C [Trichosanthes tricuspidata] >YP_009752501.1 NADH dehydrogenase subunit C [Trichosanthes tubiflora] >YP_009752586.1 NADH dehydrogenase subunit C [Trichosanthes homophylla] >YP_009753094.1 NADH dehydrogenase subunit C [Corallocarpus boehmii] >YP_009753179.1 NADH dehydrogenase subunit C [Trichosanthes truncata] >YP_009753263.1 NADH dehydrogenase subunit C [Nothoalsomitra suberosa] >YP_009753625.1 NADH dehydrogenase subunit C [Trichosanthes wallichiana] >YP_009753710.1 NADH dehydrogenase subunit C [Trichosanthes nervifolia] >YP_009753794.1 NADH dehydrogenase subunit C [Trichosanthes pilosa] >YP_009753879.1 NADH dehydrogenase subunit C [Trichosanthes lobata] >YP_009945422.1 NADH-plastoquinone oxidoreductase subunit 3 [Sechium edule] >YP_247604.1 NADH dehydrogenase subunit 3 [Cucumis sativus] >Q4VZH0.1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 3; AltName: Full=NADH-plastoquinone oxidoreductase subunit 3 [Cucumis sativus] >ALF03306.1 NADH dehydrogenase subunit 3 [Cucumis sativus var. hardwickii] >APW82466.1 NADH dehydrogenase subunit 3 [Citrullus lanatus subsp. vulgaris] >AVE15336.1 NdhC [Cucumis sativus var. sativus] >QIT04055.1 NADH dehydrogenase subunit C [Luffa aegyptiaca] >QIT05067.1 NADH dehydrogenase subunit C [Trichosanthes kirilowii] >QJD26476.1 NdhC [Trichosanthes kirilowii var. japonica] >QJD26650.1 NdhC [Trichosanthes rosthornii] >QKX48478.1 NADH-plastoquinone oxidoreductase subunit 3 [Luffa acutangula] >QNM38536.1 NADH-plastoquinone oxidoreductase subunit 3 [Lagenaria siceraria var. microcarpa] >QZL38598.1 NADH dehydrogenase subunit C [Citrullus naudinianus] >QZL38686.1 NADH dehydrogenase subunit C [Citrullus ecirrhosus])

HSP 1 Score: 118.6 bits (296), Expect = 4.0e-23
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MFLLYEYDIFWVFLIISSVILILSFLISGVLAPLSKEPEKLFSYESGIEPTGDAWVQFQI 60
          MFLLYEYDIFWVFLIISSVI IL+FLISGVLAPLSKEPEKL SYESGIEP GDAWVQF+I
Sbjct: 1  MFLLYEYDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60

Query: 61 RYYIFANVFV 71
          RYY+FA VFV
Sbjct: 61 RYYMFALVFV 70

[Close]

BLAST of CmaCh00G002330 vs. TAIR 10
Match: ATCG00440.1 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein )

HSP 1 Score: 106.7 bits (265), Expect = 1.5e-23
Identity = 54/70 (77.14%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 1  MFLLYEYDIFWVFLIISSVILILSFLISGVLAPLSKEPEKLFSYESGIEPTGDAWVQFQI 60
          MFLLYEYDIFW FL+ISS I +L+FLISGVL+P+ K PEKL SYESGIEP GDAW+QF+I
Sbjct: 1  MFLLYEYDIFWAFLLISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRI 60

Query: 61 RYYIFANVFV 71
          RYY+FA VFV
Sbjct: 61 RYYMFALVFV 70

[Close]

BLAST of CmaCh00G002330 vs. TAIR 10
Match: AT2G07751.1 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein )

HSP 1 Score: 42.4 bits (98), Expect = 3.4e-04
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 12 VFLIISSVILILSFLISGVLAPL----SKEPEKLFSYESGIEPTGDAWVQFQIRYYIFAN 71
          ++L+IS   L++S ++ GV  P     S  PEKL +YE G +P+GDA  +F IR+Y+ + 
Sbjct: 9  IYLVIS---LLVSLILLGVPFPFASNSSTYPEKLSAYECGFDPSGDARSRFDIRFYLVSI 68

The following BLAST results are available for this feature:

BLAST of CmaCh00G002330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZH0	5.2e-26	90.00	NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Cucumis sativus OX=36...	[more]
A9L9A1	6.4e-24	82.86	NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Lemna minor OX=4472 G...	[more]
Q06FV5	6.4e-24	82.86	NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Pelargonium hortorum ...	[more]
P52765	1.1e-23	81.43	NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Lupinus luteus OX=387...	[more]
Q0ZJ15	1.1e-23	82.86	NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Vitis vinifera OX=297...	[more]

BLAST of CmaCh00G002330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0S2IFJ0	8.6e-24	91.43	NADH-quinone oxidoreductase subunit A OS=Cucurbita moschata OX=3662 GN=ndhC PE=3...	[more]
A0A0S2IED4	8.6e-24	91.43	NADH-quinone oxidoreductase subunit A OS=Cucurbita argyrosperma OX=34294 GN=ndhC...	[more]
A0A2H4T1Y6	8.6e-24	91.43	NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Cucurbita maxima OX=3...	[more]
A0A0S2IGY5	8.6e-24	91.43	NADH-quinone oxidoreductase subunit A OS=Cucurbita pepo var. texana OX=37651 GN=...	[more]
A0A0S2IH51	8.6e-24	91.43	NADH-quinone oxidoreductase subunit A OS=Cucurbita pepo subsp. fraterna OX=37649...	[more]

BLAST of CmaCh00G002330 vs. NCBI nr


Match Name	E-value	Identity	Description
ALO22164.1	1.8e-23	91.43	NdhC [Cucurbita foetidissima] >ALO22875.1 NdhC [Cucurbita pedatifolia]	[more]
YP_009560840.1	1.8e-23	91.43	NdhC [Trichosanthes kirilowii] >QAB33195.1 NdhC [Trichosanthes kirilowii]	[more]
YP_009447455.1	1.8e-23	91.43	NADH dehydrogenase subunit 3 [Cucurbita maxima] >YP_009447540.1 NADH dehydrogena...	[more]
YP_009751743.1	4.0e-23	90.00	NADH dehydrogenase subunit C [Herpetospermum pedunculosum] >QIT04476.1 NADH dehy...	[more]
YP_009004049.1	4.0e-23	90.00	NADH-plastoquinone oxidoreductase subunit 3 [Cucumis hystrix] >YP_009317391.1 NA...	[more]

BLAST of CmaCh00G002330 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00440.1	1.5e-23	77.14	NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein	[more]
AT2G07751.1	3.4e-04	39.68	NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038430	NADH:ubiquinone oxidoreductase, subunit 3 superfamily	GENE3D	1.20.58.1610	NADH:ubiquinone/plastoquinone oxidoreductase, chain 3	coord: 1..76 e-value: 4.0E-17 score: 64.2
IPR000440	NADH:ubiquinone/plastoquinone oxidoreductase, chain 3	PFAM	PF00507	Oxidored_q4	coord: 23..70 e-value: 4.0E-10 score: 39.7
IPR000440	NADH:ubiquinone/plastoquinone oxidoreductase, chain 3	PANTHER	PTHR11058	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 3	coord: 1..71
None	No IPR available	PANTHER	PTHR11058:SF12	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT 3, CHLOROPLASTIC	coord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G002330.1	CmaCh00G002330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031966	mitochondrial membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0048038	quinone binding