CmaCh00G002240 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G002240
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	pathogenesis-related gene 1
Location	Cma_Chr00: 15790390 .. 15792770 (-)
RNA-Seq Expression	CmaCh00G002240
Synteny	CmaCh00G002240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGACTCAAACCCTTCGGATCATGGCCGCTTTCATGGTCACTTTCATTTTCTTCCTCGCCCTAACCAAAGCTCAAAACGCCCCCGGTGACTACCTCGCGCTTCACAACCGAGCTCGAGCCGAGGTCGGCGTCGGGCCCATGCAATGGAGCAACACCGTGGCCGCGTACGCTCAAGCCTATGCGGAAAAAAGAAAGGGTGACTGCGCCATGATTCACTCAACCGGGCCGTACGGGGAAAACATAGCCGCGGGCTACTACCCTGAGTTCACCGGGGCGGATGCAGTGAAGCTGTGGGCGAACGAGAAGCCGCTGTATGATCATGCATCGAATAAATGCGTGGGTGGTGAATGTGGGCACTACACTCAGATGGTGTGGCGGAGCTCGGTGCGGCTTGGATGTGCTAGAGTGCCTTGCAAGGCTAATTCTCAGTTTGTTGTTTGCAATTATGATCCTCCAGGCAACTATATTGGGGAAAAGCCTTATGATTCTTGGGTGGTATGAAGAGATTTGGTTTTAAAATTTTTATGAATATTAATAAAGTTTGTGAGAGAAACTTGAATTTATTTATTGAAATAAAACTACGATATTGTCTACAATAGTATTAAATTGTCTAGAGCATAAACTCTTGTTGCTGTGTTTTGACTTCCTTACTTATAAACTCATGATCATAGAGTCTCCCCTCTCATTAAGTACACCACATAGAGCCACATTTGAAGCCTATAGATTACCTATGATCATAGAGACTCCCCTCGAACAAAATACACCATAGAGCCTCCCTCGAACAAAATACACCATAGTGCCTCCGCTTAAGTCGATGGATTTCTAAAAGAAACTCCCTTTAATCGAGACTCGACTTCTTTCTTCGGAGACCTTGAACAAAATACGAAATTTGTTCGACACTTTTAACTATGATTTTTAGGCTTACAACTTTTTCGTTCGACATACCTAAGTTAAGTTCATAGTTTGATACCATGTAACTAATCACGAATCTCTATAATGTTATATGATATTTGTCAACTTTGAACATAATATCATGGGTTTGCTTCGAGCTCCCACAAGAAGTCATGTTAATGAAAATGTATTCTTTAGTTATAAATCTATGATCATTTCCGAACAGTCTTCAACACTGAGAGCATCAGCCACCAGCCAATTGTTGTTCCAAGTCACCCGGAAGAAATGCCCTCGGCAGAGATGCGGAAAACAAGTTTAAGGTGTTTTCAGCCTCCAAATCGAGAGAACCACGACGACGGCGATTAACTCCGCTGCAGTATGATACCCACACAGGAGACGAAGACTCACTGCCACAACCTACCGCCGTTTACCAGCTCTGAATATGGAGACCAACGGGGCCGGAGTGACTAAAGGACACCCGACGCTCAAAAGGCGACCATTTTTTTTCTTACTTTACTTATTGGCACTCCATTCGTCTTTTTCTCGGCTTCGTGGGAAAAAAAACAATAATAATAAATAATCAAAATGGTAAAATCAAAGAAATGCCTGTTTTTGTTGAATTACTGAAATTCCCTTTTATCGAAATACTGAAATACTGAAATTTGATAGGTACTGTGATCATTGGGCAATGCTCATGGAAAACTTCTTTAGTACTGGGTTTGGTGGAGAATGTGATTCCTGCACCAATATGACACATTGTTTTAACAGATACCAAGAAGAAGCACATTGATGATCATAAATTGAAAGATTTCAAAGCAAAGAATTATCTATTTCAAGCATTAGAACGTTCGATCTCGGAGACAACCCTCAACAAGGATACAGAAACTCAATTCATCATACCTGATGATGGCGTTGAGGATCCATTGACCTATAAACAGGCAATGAATGATGAAGATAGAGATCTGTGGATCAAAGCCATGAATCTTGAAATGGAGTCAATGTACTTCAATTCAGTCTGGGAACTTGTAGATCAACCAGATGGGGTAAAACCTATTGGTTGCAAATGGATCTATAAGAGGAAACGAGACCAAACCGGTAAGGTACAAACCTTTAAAGCTCGTCTTGTAGAAAAGGGTTATACCCAAAGAGAGGGGGTGGACTATGAAGAAACCTTCTCTCCTGTTGCTATGCTTAAATCGATTAGAATACTCTTGTCTATTGCCACATTTTATGATTATGAAATTTGGCAAATGGATGTCAAGATAGCCTTTCTAAAGGGCAATCTTGAAGAGAGTATCTATATTGCTCAACCAGATGGGTTCATTAAACAAGATCACAAGCATAGGGTTTGCAAGCTTAAAAGATCCATTTATGGGTTGAAGCAAGCATCTCGATCCTGGAATATAAAGTTTGATACCGCGATCAAATCTTATGGCTTTAAACAGAATGTTGACGAACCTTGTGTTTATAAAAGGATTGTCAACTAG

mRNA sequence

ATGTGGACTCAAACCCTTCGGATCATGGCCGCTTTCATGGTCACTTTCATTTTCTTCCTCGCCCTAACCAAAGCTCAAAACGCCCCCGGTGACTACCTCGCGCTTCACAACCGAGCTCGAGCCGAGGTCGGCGTCGGGCCCATGCAATGGAGCAACACCGTGGCCGCGTACGCTCAAGCCTATGCGGAAAAAAGAAAGGGTGACTGCGCCATGATTCACTCAACCGGGCCGTACGGGGAAAACATAGCCGCGGGCTACTACCCTGAGTTCACCGGGGCGGATGCAGTGAAGCTGTGGGCGAACGAGAAGCCGCTGTATGATCATGCATCGAATAAATGCGTGGGTGGTGAATGTGGGCACTACACTCAGATGGTGTGGCGGAGCTCGGTGCGGCTTGGATGTGCTAGAGTGCCTTGCAAGGCTAATTCTCAGTTTGTTGTTTGCAATTATGATCCTCCAGGCAACTATATTGGGGAAAAGCCTTATGATTCTTGGGTGGAGACGAAGACTCACTGCCACAACCTACCGCCGTTTACCAGCTCTGAATATGGAGACCAACGGGGCCGGAATACCAAGAAGAAGCACATTGATGATCATAAATTGAAAGATTTCAAAGCAAAGAATTATCTATTTCAAGCATTAGAACGTTCGATCTCGGAGACAACCCTCAACAAGGATACAGAAACTCAATTCATCATACCTGATGATGGCGTTGAGGATCCATTGACCTATAAACAGGCAATGAATGATGAAGATAGAGATCTGTGGATCAAAGCCATGAATCTTGAAATGGAGTCAATGTACTTCAATTCAGTCTGGGAACTTGTAGATCAACCAGATGGGGTAAAACCTATTGGTTGCAAATGGATCTATAAGAGGAAACGAGACCAAACCGGTAAGGTACAAACCTTTAAAGCTCGTCTTGTAGAAAAGGGTTATACCCAAAGAGAGGGGGTGGACTATGAAGAAACCTTCTCTCCTGTTGCTATGCTTAAATCGATTAGAATACTCTTGTCTATTGCCACATTTTATGATTATGAAATTTGGCAAATGGATGTCAAGATAGCCTTTCTAAAGGGCAATCTTGAAGAGAGTATCTATATTGCTCAACCAGATGGGTTCATTAAACAAGATCACAAGCATAGGGTTTGCAAGCTTAAAAGATCCATTTATGGGTTGAAGCAAGCATCTCGATCCTGGAATATAAAGTTTGATACCGCGATCAAATCTTATGGCTTTAAACAGAATGTTGACGAACCTTGTGTTTATAAAAGGATTGTCAACTAG

Coding sequence (CDS)

ATGTGGACTCAAACCCTTCGGATCATGGCCGCTTTCATGGTCACTTTCATTTTCTTCCTCGCCCTAACCAAAGCTCAAAACGCCCCCGGTGACTACCTCGCGCTTCACAACCGAGCTCGAGCCGAGGTCGGCGTCGGGCCCATGCAATGGAGCAACACCGTGGCCGCGTACGCTCAAGCCTATGCGGAAAAAAGAAAGGGTGACTGCGCCATGATTCACTCAACCGGGCCGTACGGGGAAAACATAGCCGCGGGCTACTACCCTGAGTTCACCGGGGCGGATGCAGTGAAGCTGTGGGCGAACGAGAAGCCGCTGTATGATCATGCATCGAATAAATGCGTGGGTGGTGAATGTGGGCACTACACTCAGATGGTGTGGCGGAGCTCGGTGCGGCTTGGATGTGCTAGAGTGCCTTGCAAGGCTAATTCTCAGTTTGTTGTTTGCAATTATGATCCTCCAGGCAACTATATTGGGGAAAAGCCTTATGATTCTTGGGTGGAGACGAAGACTCACTGCCACAACCTACCGCCGTTTACCAGCTCTGAATATGGAGACCAACGGGGCCGGAATACCAAGAAGAAGCACATTGATGATCATAAATTGAAAGATTTCAAAGCAAAGAATTATCTATTTCAAGCATTAGAACGTTCGATCTCGGAGACAACCCTCAACAAGGATACAGAAACTCAATTCATCATACCTGATGATGGCGTTGAGGATCCATTGACCTATAAACAGGCAATGAATGATGAAGATAGAGATCTGTGGATCAAAGCCATGAATCTTGAAATGGAGTCAATGTACTTCAATTCAGTCTGGGAACTTGTAGATCAACCAGATGGGGTAAAACCTATTGGTTGCAAATGGATCTATAAGAGGAAACGAGACCAAACCGGTAAGGTACAAACCTTTAAAGCTCGTCTTGTAGAAAAGGGTTATACCCAAAGAGAGGGGGTGGACTATGAAGAAACCTTCTCTCCTGTTGCTATGCTTAAATCGATTAGAATACTCTTGTCTATTGCCACATTTTATGATTATGAAATTTGGCAAATGGATGTCAAGATAGCCTTTCTAAAGGGCAATCTTGAAGAGAGTATCTATATTGCTCAACCAGATGGGTTCATTAAACAAGATCACAAGCATAGGGTTTGCAAGCTTAAAAGATCCATTTATGGGTTGAAGCAAGCATCTCGATCCTGGAATATAAAGTTTGATACCGCGATCAAATCTTATGGCTTTAAACAGAATGTTGACGAACCTTGTGTTTATAAAAGGATTGTCAACTAG

Protein sequence

MWTQTLRIMAAFMVTFIFFLALTKAQNAPGDYLALHNRARAEVGVGPMQWSNTVAAYAQAYAEKRKGDCAMIHSTGPYGENIAAGYYPEFTGADAVKLWANEKPLYDHASNKCVGGECGHYTQMVWRSSVRLGCARVPCKANSQFVVCNYDPPGNYIGEKPYDSWVETKTHCHNLPPFTSSEYGDQRGRNTKKKHIDDHKLKDFKAKNYLFQALERSISETTLNKDTETQFIIPDDGVEDPLTYKQAMNDEDRDLWIKAMNLEMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVEKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKIAFLKGNLEESIYIAQPDGFIKQDHKHRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVN

Homology

[Close]

BLAST of CmaCh00G002240 vs. ExPASy Swiss-Prot
Match: P11670 (Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum OX=4097 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 8.1e-52
Identity = 93/157 (59.24%), Postives = 114/157 (72.61%), Query Frame = 0


Query: 6   LRIMAAFMVTFIFFLALTKAQNAPGDYLALHNRARAEVGVGPMQWSNTVAAYAQAYAEKR 65
           L  + A  +TF   +  +KAQN+P DYL  HN AR +VGVGPM W N +AAYAQ YA +R
Sbjct: 4   LTTIVACFITFAILIHSSKAQNSPQDYLNPHNAARRQVGVGPMTWDNRLAAYAQNYANQR 63

Query: 66  KGDCAMIHSTGPYGENIAAGYYPEFTGADAVKLWANEKPLYDHASNKCVGGECGHYTQMV 125
            GDC MIHS GPYGEN+AA  +P+   A AVK+W +EK  YD+ SN CVGG CGHYTQ+V
Sbjct: 64  IGDCGMIHSHGPYGENLAAA-FPQLNAAGAVKMWVDEKRFYDYNSNSCVGGVCGHYTQVV 123

Query: 126 WRSSVRLGCARVPCKANSQFVVCNYDPPGNYIGEKPY 163
           WR+SVRLGCARV       F+ CNYDPPGN+IG++P+
Sbjct: 124 WRNSVRLGCARVRSNNGWFFITCNYDPPGNFIGQRPF 159

[Close]

BLAST of CmaCh00G002240 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.0e-47
Identity = 88/195 (45.13%), Postives = 134/195 (68.72%), Query Frame = 0


Query: 229 TQFIIPDDGVEDPLTYKQAMNDEDRDLWIKAMNLEMESMYFNSVWELVDQPDGVKPIGCK 288
           T++++  D   +P + K+ ++  +++  +KAM  EMES+  N  ++LV+ P G +P+ CK
Sbjct: 800 TEYVLISDD-REPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCK 859

Query: 289 WIYKRKRDQTGKVQTFKARLVEKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEI 348
           W++K K+D   K+  +KARLV KG+ Q++G+D++E FSPV  + SIR +LS+A   D E+
Sbjct: 860 WVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEV 919

Query: 349 WQMDVKIAFLKGNLEESIYIAQPDGFIKQDHKHRVCKLKRSIYGLKQASRSWNIKFDTAI 408
            Q+DVK AFL G+LEE IY+ QP+GF     KH VCKL +S+YGLKQA R W +KFD+ +
Sbjct: 920 EQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFM 979

Query: 409 KSYGFKQNVDEPCVY 424
           KS  + +   +PCVY
Sbjct: 980 KSQTYLKTYSDPCVY 993

[Close]

BLAST of CmaCh00G002240 vs. ExPASy Swiss-Prot
Match: P33154 (Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=At2g14610 PE=1 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.3e-45
Identity = 83/155 (53.55%), Postives = 110/155 (70.97%), Query Frame = 0


Query: 12  FMVTFIFFLAL----TKAQNAPGDYLALHNRARAEVGVGPMQWSNTVAAYAQAYAEKRKG 71
           F++ F+  +      +KAQ++P DYL +HN+AR  VGVGPMQW   VAAYA++YAE+ +G
Sbjct: 9   FLIVFVALVGALVLPSKAQDSPQDYLRVHNQARGAVGVGPMQWDERVAAYARSYAEQLRG 68

Query: 72  DCAMIHSTGPYGENIAAGYYPEFTGADAVKLWANEKPLYDHASNKCVGGECGHYTQMVWR 131
           +C +IHS GPYGEN+A G   + +G  AV +W +EK  Y++A+N C  G CGHYTQ+VWR
Sbjct: 69  NCRLIHSGGPYGENLAWG-SGDLSGVSAVNMWVSEKANYNYAANTC-NGVCGHYTQVVWR 128

Query: 132 SSVRLGCARVPCKANSQFVVCNYDPPGNYIGEKPY 163
            SVRLGCA+V C      + CNYDP GNY+ EKPY
Sbjct: 129 KSVRLGCAKVRCNNGGTIISCNYDPRGNYVNEKPY 161

[Close]

BLAST of CmaCh00G002240 vs. ExPASy Swiss-Prot
Match: P08299 (Pathogenesis-related protein 1A OS=Nicotiana tabacum OX=4097 PE=1 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.1e-44
Identity = 84/152 (55.26%), Postives = 103/152 (67.76%), Query Frame = 0


Query: 15  TFIFFLALT---KAQNAPGDYLALHNRARAEVGVGPMQWSNTVAAYAQAYAEKRKGDCAM 74
           T + FL ++   +AQN+  DYL  HN ARA+VGV P+ W + VAAYAQ YA +   DC +
Sbjct: 17  TLLLFLVISHSCRAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNL 76

Query: 75  IHSTGPYGENIAAGYYPEFTGADAVKLWANEKPLYDHASNKCVGGE-CGHYTQMVWRSSV 134
           +HS G YGEN+A G     T A AV++W +EK  YDH SN C  G+ CGHYTQ+VWR+SV
Sbjct: 77  VHSHGQYGENLAEGSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSV 136

Query: 135 RLGCARVPCKANSQFVVCNYDPPGNYIGEKPY 163
           R+GCARV C      V CNYDPPGNY GE PY
Sbjct: 137 RVGCARVQCNNGGYVVSCNYDPPGNYRGESPY 168

[Close]

BLAST of CmaCh00G002240 vs. ExPASy Swiss-Prot
Match: Q08697 (Pathogenesis-related protein 1A1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.8e-44
Identity = 86/151 (56.95%), Postives = 105/151 (69.54%), Query Frame = 0


Query: 8   IMAAFMVTFIFFLALTKAQNAPGDYLALHNRARAEVGVGPMQWSNTVAAYAQAYAEKRKG 67
           I  A  +TFI F + ++AQ    ++L  HN AR  VGVGPM W + +AAYAQ YA +R  
Sbjct: 5   IFVACFITFIIFHS-SQAQTPRENFLNAHNAARRRVGVGPMTWDDGLAAYAQNYANQRAD 64

Query: 68  DCAMIHSTGPYGENIAAGYYPEFTGADAVKLWANEKPLYDHASNKCVGGE-CGHYTQMVW 127
           DC MIHS GPYGEN+AA  +P+   A AVK+W +EK  YD+ SN C  G+ CGHYTQ+VW
Sbjct: 65  DCGMIHSDGPYGENLAAA-FPQLNAAGAVKMWDDEKQWYDYNSNTCAPGKVCGHYTQVVW 124

Query: 128 RSSVRLGCARVPCKANSQFVVCNYDPPGNYI 158
           R SVRLGCARV C +   F+ CNYDPPGNYI
Sbjct: 125 RKSVRLGCARVRCNSGWVFITCNYDPPGNYI 153

[Close]

BLAST of CmaCh00G002240 vs. TAIR 10
Match: AT4G33720.1 (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein )

HSP 1 Score: 184.5 bits (467), Expect = 1.8e-46
Identity = 89/161 (55.28%), Postives = 112/161 (69.57%), Query Frame = 0


Query: 3   TQTLRIMAAFMVTFIFFLALTKAQNAPGDYLALHNRARAEVGVGPMQWSNTVAAYAQAYA 62
           +Q L +   F +  I  L   KAQ++P D+LA+HNRARAEVGVGP++W   VAAYA+ YA
Sbjct: 7   SQNLFLAITFFLVLIVHL---KAQDSPQDFLAVHNRARAEVGVGPLRWDEKVAAYARNYA 66

Query: 63  EKRKGDCAMIHSTGPYGENIAAGYYPEFTGADAVKLWANEKPLYDHASNKCV-GGECGHY 122
            +RKGDCAM HS+G YGENIA       TG  AV +W +E+  YD+ SN C    +CGHY
Sbjct: 67  NQRKGDCAMKHSSGSYGENIAWS-SGSMTGVAAVDMWVDEQFDYDYDSNTCAWDKQCGHY 126

Query: 123 TQMVWRSSVRLGCARVPCKANSQFVVCNYDPPGNYIGEKPY 163
           TQ+VWR+S RLGCA+V C     F+ CNYDPPGN++GE PY
Sbjct: 127 TQVVWRNSERLGCAKVRCNNGQTFITCNYDPPGNWVGEWPY 163

[Close]

BLAST of CmaCh00G002240 vs. TAIR 10
Match: AT2G14610.1 (pathogenesis-related gene 1 )

HSP 1 Score: 184.1 bits (466), Expect = 2.3e-46
Identity = 83/155 (53.55%), Postives = 110/155 (70.97%), Query Frame = 0


Query: 12  FMVTFIFFLAL----TKAQNAPGDYLALHNRARAEVGVGPMQWSNTVAAYAQAYAEKRKG 71
           F++ F+  +      +KAQ++P DYL +HN+AR  VGVGPMQW   VAAYA++YAE+ +G
Sbjct: 9   FLIVFVALVGALVLPSKAQDSPQDYLRVHNQARGAVGVGPMQWDERVAAYARSYAEQLRG 68

Query: 72  DCAMIHSTGPYGENIAAGYYPEFTGADAVKLWANEKPLYDHASNKCVGGECGHYTQMVWR 131
           +C +IHS GPYGEN+A G   + +G  AV +W +EK  Y++A+N C  G CGHYTQ+VWR
Sbjct: 69  NCRLIHSGGPYGENLAWG-SGDLSGVSAVNMWVSEKANYNYAANTC-NGVCGHYTQVVWR 128

Query: 132 SSVRLGCARVPCKANSQFVVCNYDPPGNYIGEKPY 163
            SVRLGCA+V C      + CNYDP GNY+ EKPY
Sbjct: 129 KSVRLGCAKVRCNNGGTIISCNYDPRGNYVNEKPY 161

[Close]

BLAST of CmaCh00G002240 vs. TAIR 10
Match: AT1G50060.1 (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein )

HSP 1 Score: 181.0 bits (458), Expect = 2.0e-45
Identity = 82/151 (54.30%), Postives = 101/151 (66.89%), Query Frame = 0


Query: 13  MVTFIFFLALTKAQNAPGDYLALHNRARAEVGVGPMQWSNTVAAYAQAYAEKRKGDCAMI 72
           +V   F +  T AQN P DYL  HN ARA+VGV  + W  T+AAYA  Y+  RK DC ++
Sbjct: 11  IVAISFLVVATNAQNTPQDYLNSHNTARAQVGVPNVVWDTTLAAYALNYSNFRKADCNLV 70

Query: 73  HSTGPYGENIAAGYYPEFTGADAVKLWANEKPLYDHASNKCVGG-ECGHYTQMVWRSSVR 132
           HS GPYGEN+A G    F+   AVKLW +EKP Y +A N C GG +C HYTQ+VWR SV+
Sbjct: 71  HSNGPYGENLAKGSSSSFSAISAVKLWVDEKPYYSYAYNNCTGGKQCLHYTQVVWRDSVK 130

Query: 133 LGCARVPCKANSQFVVCNYDPPGNYIGEKPY 163
           +GCARV C     FV CNY+ PGN++GE PY
Sbjct: 131 IGCARVQCTNTWWFVSCNYNSPGNWVGEYPY 161

[Close]

BLAST of CmaCh00G002240 vs. TAIR 10
Match: AT2G14580.1 (basic pathogenesis-related protein 1 )

HSP 1 Score: 176.4 bits (446), Expect = 4.9e-44
Identity = 82/161 (50.93%), Postives = 111/161 (68.94%), Query Frame = 0


Query: 2   WTQTLRIMAAFMVTFIFFLALTKAQNAPGDYLALHNRARAEVGVGPMQWSNTVAAYAQAY 61
           +++ L I+AA +   +  L   KAQ++  DY+  HN+AR+++GVGPMQW   +AAYA+ Y
Sbjct: 6   YSRILIILAALVGALVVPL---KAQDSQQDYVNAHNQARSQIGVGPMQWDEGLAAYARNY 65

Query: 62  AEKRKGDCAMIHSTGPYGENIAAGYYPEFTGADAVKLWANEKPLYDHASNKCVGGECGHY 121
           A + KGDC ++HS GPYGEN+A     + +G  AV LW NEK  Y++ +N C  G CGHY
Sbjct: 66  ANQLKGDCRLVHSRGPYGENLAKS-GGDLSGVAAVNLWVNEKANYNYDTNTC-NGVCGHY 125

Query: 122 TQMVWRSSVRLGCARVPCKANSQFVVCNYDPPGNYIGEKPY 163
           TQ+VWR+SVRLGCA+V C      + CNYDPPGNY  +KPY
Sbjct: 126 TQVVWRNSVRLGCAKVRCNNGGTIISCNYDPPGNYANQKPY 161

[Close]

BLAST of CmaCh00G002240 vs. TAIR 10
Match: AT2G19990.1 (pathogenesis-related protein-1-like )

HSP 1 Score: 173.3 bits (438), Expect = 4.1e-43
Identity = 80/136 (58.82%), Postives = 100/136 (73.53%), Query Frame = 0


Query: 29  PGDYLALHNRARAEVGVGPMQWSNTVAAYAQAYAEKRKGDCAMIHSTGPYGENIAAGYYP 88
           P + L +HN+ARA VGVGPM W+ T+A YAQ+YA +R  DCAM HS GP+GEN+AAG + 
Sbjct: 42  PQETLVVHNKARAMVGVGPMVWNETLATYAQSYAHERARDCAMKHSLGPFGENLAAG-WG 101

Query: 89  EFTGADAVKLWANEKPLYDHASNKCVG-GECGHYTQMVWRSSVRLGCARVPCKANSQ-FV 148
             +G  A + W  EK  YD+ SN C G G CGHYTQ+VWR SVRLGCA V CK +   +V
Sbjct: 102 TMSGPVATEYWMTEKENYDYDSNTCGGDGVCGHYTQIVWRDSVRLGCASVRCKNDEYIWV 161

Query: 149 VCNYDPPGNYIGEKPY 163
           +C+YDPPGNYIG++PY
Sbjct: 162 ICSYDPPGNYIGQRPY 176

The following BLAST results are available for this feature:

BLAST of CmaCh00G002240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P11670	8.1e-52	59.24	Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum OX=4097 PE=3 S...	[more]
P10978	6.0e-47	45.13	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P33154	3.3e-45	53.55	Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=At2g14610 PE=1...	[more]
P08299	2.1e-44	55.26	Pathogenesis-related protein 1A OS=Nicotiana tabacum OX=4097 PE=1 SV=1	[more]
Q08697	4.8e-44	56.95	Pathogenesis-related protein 1A1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1	[more]

BLAST of CmaCh00G002240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33720.1	1.8e-46	55.28	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 pro...	[more]
AT2G14610.1	2.3e-46	53.55	pathogenesis-related gene 1	[more]
AT1G50060.1	2.0e-45	54.30	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 pro...	[more]
AT2G14580.1	4.9e-44	50.93	basic pathogenesis-related protein 1	[more]
AT2G19990.1	4.1e-43	58.82	pathogenesis-related protein-1-like	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001283	Cysteine-rich secretory protein-related	PRINTS	PR00837	V5TPXLIKE	coord: 118..134 score: 63.28 coord: 48..66 score: 36.79 coord: 95..108 score: 38.5 coord: 145..158 score: 58.05
IPR001283	Cysteine-rich secretory protein-related	PANTHER	PTHR10334	CYSTEINE-RICH SECRETORY PROTEIN-RELATED	coord: 19..162
IPR002413	Venom allergen 5-like	PRINTS	PR00838	V5ALLERGEN	coord: 48..66 score: 27.63 coord: 117..136 score: 49.69 coord: 93..108 score: 30.47
IPR014044	CAP domain	SMART	SM00198	SCP_3	coord: 27..158 e-value: 4.0E-59 score: 212.4
IPR014044	CAP domain	PFAM	PF00188	CAP	coord: 33..150 e-value: 2.8E-22 score: 79.9
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 270..425 e-value: 2.0E-50 score: 171.7
IPR035940	CAP superfamily	GENE3D	3.40.33.10	CAP	coord: 23..170 e-value: 5.3E-44 score: 152.0
IPR035940	CAP superfamily	SUPERFAMILY	55797	PR-1-like	coord: 22..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 177..196
None	No IPR available	PANTHER	PTHR10334:SF488	PATHOGENESIS-RELATED PROTEIN 1	coord: 19..162
None	No IPR available	CDD	cd05381	CAP_PR-1	coord: 29..162 e-value: 3.25362E-86 score: 257.177
IPR018244	Allergen V5/Tpx-1-related, conserved site	PROSITE	PS01010	CRISP_2	coord: 145..156
IPR018244	Allergen V5/Tpx-1-related, conserved site	PROSITE	PS01009	CRISP_1	coord: 119..129
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 270..414

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G002240.1	CmaCh00G002240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0009607	response to biotic stimulus
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding