CmaCh00G001320 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G001320
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Photosystem I P700 chlorophyll a apoprotein A2
Location	Cma_Chr00: 7626848 .. 7633241 (-)
RNA-Seq Expression	CmaCh00G001320
Synteny	CmaCh00G001320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAGTTGCTCCTGCTACTCTCAGCCTAGAGCCTTGATTGAGCATTGTCCAAGGACGTGCTGTAGGAGTAACCCATCCATTACCTTACCTTCTGGGTGGAATTGCCACAACATAGGCACTCTTTCTCTTCTTAGCAAGAATTATTGCAGTCGGATAATGGCTAGGAGGATTTGCATTATGGCACTAGGATTTCCAAGGTTTAGCCAAGGCTTAACTCAGGACCCCACTACTCGTGGTATTTGGTTTGGTATTGCTACCGCGCCTGACTTCGAAAGGCATGATGATATTACTGAAGAACGTCTTTATCATCATCTTTTTGCTTCCTTCGCATTTCGGGCAATTAGCAAGAATTTGTCTGTGTATACTTCTATAAATATCTTTCATGTAGCTTGGCAAGGAAATTTTGAAGCATGGGTACAAGCAAGACCCTTTCCATGTAAGACCTATTTGCAATTTTGGATCCTCGGTCAACCGGAAAAGCTTTTACTCGAGGGGGTGCTCCCAGTGAATATCGCTTATTCTGGTGTTTCTTTCTTTCTCAGTGGTGGTATACAATCGGGTTACATACTAAGGGGGATCTTTATATGGGAGGGGAGCTCTTCTTTTTCTATTCTTTCTTTCTACCATATCTTTCATAGCGGGTTGGTTACACCTACAACCGAAATCGAAAGCGAGCCTTTCGTGGTTTCAAAATGCCAAATCTCGTCTCAATCATCATTTGTCAGGACTATTCATTTGGAGTCAGTTCCTTGGCTTGGACAGGCCATTTCAGCCATGTCGCTATTCCTGCATCCAGGGGAGAATATGTTGGAAGAATTTCTTAGACGTATTGTGATATGAACCAAAAGACATCAATCATACAATATACTTCAATGAAGATGTGAAGAAAAGGTTGTCAAAATTATCAAAAGATGTTGATTCATGCCACATTGAAGAAGAATGAAGTTTGATTGTTATAAATTTTGGGTGGGTTACAATTTAGAGTTATTGTATTTCATTTATGTATTTTAAGACTTTATTTACTATAGGTTACAATTACATAATGGTTAATTATGGCCATTAAGTATGAATGTTACAACTCTTGGAATGCCTTTAATAGTTTCATTTTGAGGCTATATAAAGCCATGTATGTTGTATGTGTGAGAGACTTGAAAAATATAGTAAAAAGAAGCATTTGTGCTCTTCTTTAGCCAATGCAATTCTATGTAGTTTAGGCTGCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCATGGAAGTGTTCTTGCCTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGCCTTGAGATATTCGATCAACAAGGTAATCCGAATCCTACTCCCCTTGTAGTGGTTCCTTTTCTTATCATTTGGTATCATAGCTTAAGGCTCAAGATCGGATATATGTTTCCTTTGCATTTCTTTTCAATTTGTTTTTATCTTTTTAGTTTTTAATCGACCCAAAATAAAAAAAAATGAAATATGGGCTCTACTAGAAAATTTGAGAGGTGAGGATGAGAGATTCATTTGTGTAAATGAGTGCAAACAGAGTGGCCTAAAATTCCTTGAGTGTATACACGTGAGAGAGTGTTGTGAGGTCCTTTGTATTTCCATAACTTATTTTTTGCAGCAAAGTTTCACAAATAGATTCGAGGACGAATCCTCTTGAAGAAGTGAAAAATGATATGAACCAAAAGACATCAATCATACAATATACTTCAATGAAGATGTGAAGAAAATGTTGTCAAAATTATCAAAAGATGTTTCAATTCATGTCACATTGAAGAAGAATGAAGTTTGATTGTTATAAATTTTGGGTGGGTTACAATTTAGAGTTATTGTATTTCATCTATGTATTTTAAGACTTTATTTACTATACGTTACAATTACATAATGGTTAATTATGGCCATTAAGTATGAATGTTACAACTCTTGGAATGACTTTAGTAGTTTCATTTTGAGGCTATATAAAGCCATGTATGTTGTATGTGTAAGAGACTTGAAAAATATAGTAAAAAGAAACATTTGTGCTCTTCTTTAGCCAATGGCTAAGTTTCTTTGCAATTCTATGTAGTTTAGGTTGCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCATGGAAGTGTTCTTGCCTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGCCTTGAGATATTCGATCAACAAGGTAATCCGAATCTTACTTCCCTTGTAGTGGTTCCTTATCTTATCATTTGGTATCAGAGCTTCAGGCTCAAGATCGGATATATGTTTCCTTTGCATTTTTTTTTTTCAATTTGATTTTTATTTATTTTTATCCTTTTAGTTTTTAATCGACCCAGAATTCAAAATTCAATCTTTGCTCTATTTCAAATTTTGAGAGGTGAGAATGAGAGCTTCATTTGTGTAACTGAGTTTAAAAAGAGTGGCCTAAAATTCCTTGAGTGTATACACGTGAGAGAGTGTTGTGAGGTCCTTTGTATTTCCATAACTTATTTTTTGCAGCAAAGTTTCACAAATAGATTCGAGGACGAATCCTCTTGAAGAAGTGGAGAATGATATGAACCAAAAGACATCAATCATACAATATACTTCAATGAAGATGTGAAGAAAAGGTTGTCAAAATTATCAAAAGATGTTTCAATTCATGCCACATTGAAGAAGAATGAAGTTTGATTGTTATAAATTTTGGGTGGGTTACAATTTAGAGTTATTGTATTTCATTTATGTATTTTAAGACTTTATTTACTATAGGTTACAATTACATAATGGTTAATTATGGCCATTAAGTATGAATGTTACAACTCTTGGAATGACTTTAGTAGTTTCATTTTGAGGCTATATAAAGCCATGTATGTTGTATGTGTAAGAGACTTGAAAAATATAGTAAAAAGAAACATTTGTGCTCTTCTTTAGCCAATGGCTAAGTTTCTTTGCAATTCTATGTAGTTTAGGTTGCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCAAGGAAGTGTTCTTACCTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGCCTTGAGATATTCGATCAACAAGGTAATCCGAATCTTACTTCCCTTGTAGTGGTTCCTTTTCTTATCATATTGCCACATCCCCAAGGATTAGGACCACTTTAGCTGGGTCAGTGTAATCTTTATGCTCACCCGATTCAAATAATCATTGATTTGGTACTGCCGAAGGAGCAGGAACTGCCATTCTAACCCTTCTTTCTCTGGGATTCTCCATCCGCAAAGTTTCTAGCTGACTGATATGGCTCATCTTCATTTAGCTATTGCATTTCTTTTTCTTGTTGCTGGTCATATGTATAGATAGAACTAACTTCGGGGTTGGACAAAGTATAAAAGATCTTTTAGAAGCACATATTCGGGGGACGATTTGGGCGTGGACATAAAGTTATGACACAATCAATAATTCTCTTCATTTTCAATTAGGCCTTACTTTAGCCTCTTTAGGGGTTATTAGATTACATTACTGACTTCCTTGGTAGCTCAACACATGTACTCTTTACCTGCTTATGCGTTCATAGCACAAGAAGACGACTCGACTACTCTACTCAAGCTGCGTTATATACCCATCACCAATACATAGCAGGATGAATTATGACAGACAGGAGCTTTTGCTCATGGAGCTATATTCTAGAGATTACAATACCAAACAGAATGAGGATAATGTAATGTATTGGCAAGAATGTTAGACCATAAAGAAAAGAAGCTATCATATATATATCCCATTGAAGTTGGGCCAGCCTTTTTCTGGGGGTTCCATACTTTGGGGCTTTAGGTTCGTTCATAATGATGTCATGCTTGCTTTTGGTACTCCGGAGAAAGAAATCTTAATCGACACCCATATTTGCCCAATAGATTCAATCTGCTCATGGTCAAACTGAATATAGGTTCGATGTCCTTTTATCTTCAACAAGCGGCCTGACGTTCAATGCTGTTAAATAGTAATGCACTATTCTTCACAATAGGGCCCGAAGACTGATTGGTTCATCATGCTATTGCTTTAGGGTTACATATAACTACATTGATCTTAGTAAAAGGTGCTTTAGATGGACATGGTTCCAAATGAATGCCGGATAAAAAGGATTTTGGCTATAGTTTTCCTTGGTCTGGGACGAGGTGGTACTTGTTATATTTCAGCTTGAGACGCCTTTGGCCGTTTTCTGGATGTGAAATACCATTGGCTACTTTAGATTGGCACTGGAAGCACATCACATTGTGTATGGCATGGTAACGTTTCACAGTTTCATTCATCTTTCACTTACTTATTTGCTGGGATGGTTAAGAGATTCTTTATGGTTAAACTCTTCACAACTTCTCAATGGGATAATTAGAATTAATCCTTGTTGGTATGAATAGTTTATCAGTCCGGGGGCGCGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTCTATTCTGAATTTCCTGGCGGGGGGATATTGGTAAGAAGAATTGATTGAAACTTTAGTGTGGGCTCACGAACGCACACCCTTGGCTAATTTGATTTGAGAGAGAACCAACCCAGTGACTCTTTCTTTCCATTGTGCAAGATTTGTTGGATTAGCCCCCTTTTCCGTAGGTTACATATTGACTTATGCGGCTTTCTGCCTCTACATCAGGCTAATTTGGTTCATTTTGTATGTGTTGTATCCTATCAAATCTCATCTCTTTGGAGAAGGGGATCTTCTTTCTTATATTTCTACATCTAGGATCTGACTTGTATCATTGATACTACTAGGAATGGAATCATTATGGCAAGGAAAAGTGTAATAGGGAGAGGGAGAAGAAGAGGGCAAAATTGGAACACAAATCTGATTCGTCCATCCTTAAAAAAAGAAATAAGCAAAGTTCCATCCTTGAGTGAGAAATGGGAAATTCATGGCAAGTGACAATCCCCACCGCGTAATAGTGCACCCACACGTCTTCATCGACCGACGTTGTTTTTTCACCGGAAGACCGAGAGCTAACGATCGAGACTTTCTTTGGGCTATCTGGACACATACAGACTTATACTTCGGGAAATGGTTCATGCATGCTTGTTGCCTGGGAGAAGGAAGAAGATCAAGGATTCAAATAGCCCTTTCTATTCATTTCTATTATCACGACCCCCTTTCTTTCTTTCTTTACCATTCTCTGTATAAATCTTGACTATTCTATTTGTAAAGATATGGTTATAGGGGCGCGCATTCAATCTTTCTTTGTCTATTAGTTCACAGTTCTTCTCTTCGCGGGGTGGAGCAGCTTGGTAGCTCACAAGGCTCATAACCTTTCAGTCATGAGTTCAAATCCTGTCTCCGCTCAATCTCATTTTGATAAAATGTACCACGTAGAGATTGAAATGTATTCTTCTATATTACTTCCTTCTTTTTTAAGACTTGAGCATGTATGGGATTCAGGGTAGTAGTCTTTTTTTCATTCAGAAATAAGGGGGATACTCGATCATATATATCTAGATCCATATAAATAGACTTCTAGATTTACGACTGAGATACAGTCTAGACTATAATGGTCTCAACTTATATGTCAATGTTCTATTCTATTCGGTGGGATGGGATATAAAGAAAATGGAAATTCTCTTTCGGAGAGATGGCCGTGTGGTTGATAGCTCCGGGCTTGAAAACCGGTCTTGTATAGTGTTCGAATAAAGAACTATCGAGGGTTCGAATCCCTCTCTCTCCTTTTGCTCGGCAAATAGATTCTTTATTTGATTGGGTTTGTTTCCCCGGCTCAATATCATAAAGGGGAATGGTTCGGCTAGGTGGGATAGATAGCCCAGCCAAAATAGAAAACAAAGAGTAGATAGAAATGAAGAAAGGAAAAAGGAATTGATCGTTTGAATCTATTCTTTTCATGACCTGAATAGGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCAGGAATTTCGGTAGCTACGCCACCCCCAGAATTGAAAGAACCTAAAGGAGCGCATGGGGCATATATTCCGCAGAACGTCATTCTTGCCAAGGTTGTATATCTTTGCTTGCCTACTCAAGTCCAAACCATTAGGCCCCCTTACTTAGTGGTTCTAACCAAGGAGCACGCGGATCCAAAAAACGCATAG

mRNA sequence

ATGAAAAGTTGCTCCTGCTACTCTCAGCCTAGAGCCTTGATTGAGCATTGTCCAAGGACGTGCTGTAGGAGTAACCCATCCATTACCTTACCTTCTGGGTGGAATTGCCACAACATAGGCACTCTTTCTCTTCTTAGCAAGAATTATTGCAGTCGGATAATGGCTAGGAGGATTTGCATTATGGCACTAGGATTTCCAAGGTTTAGCCAAGGCTTAACTCAGGACCCCACTACTCGTGGTATTTGGTTTGGTATTGCTACCGCGCCTGACTTCGAAAGGCATGATGATATTACTGAAGAACGTCTTTATCATCATCTTTTTGCTTCCTTCGCATTTCGGGCAATTAGCAAGAATTTGTCTGTGTATACTTCTATAAATATCTTTCATGTAGCTTGGCAAGGAAATTTTGAAGCATGGGTACAAGCAAGACCCTTTCCATGTAAGACCTATTTGCAATTTTGGATCCTCGGTCAACCGGAAAAGCTTTTACTCGAGGGGGTGCTCCCAGTGAATATCGCTTATTCTGGTGTTTCTTTCTTTCTCAGTGGTGGTATACAATCGGGTTACATACTAAGGGGGATCTTTATATGGGAGGGGAGCTCTTCTTTTTCTATTCTTTCTTTCTACCATATCTTTCATAGCGGGTTGGTTACACCTACAACCGAAATCGAAAGCGAGCCTTTCGTGGTTTCAAAATGCCAAATCTCGTCTCAATCATCATTTGTCAGGACTATTCATTTGGAGTCAGTTCCTTGGCTTGGACAGGCCATTTCAGCCATTTTATCAGTCCGGGGGCGCGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTCTATTCTGAATTTCCTGGCGGGGGGATATTGAGAACCAACCCAGTGACTCTTTCTTTCCATTGTGCAAGATTTGTTGGATTAGCCCCCTTTTCCGTAGGAATTTCGGTAGCTACGCCACCCCCAGAATTGAAAGAACCTAAAGGAGCGCATGGGGCATATATTCCGCAGAACGTCATTCTTGCCAAGGTTGTATATCTTTGCTTGCCTACTCAAGTCCAAACCATTAGGCCCCCTTACTTAGTGGTTCTAACCAAGGAGCACGCGGATCCAAAAAACGCATAG

Coding sequence (CDS)

ATGAAAAGTTGCTCCTGCTACTCTCAGCCTAGAGCCTTGATTGAGCATTGTCCAAGGACGTGCTGTAGGAGTAACCCATCCATTACCTTACCTTCTGGGTGGAATTGCCACAACATAGGCACTCTTTCTCTTCTTAGCAAGAATTATTGCAGTCGGATAATGGCTAGGAGGATTTGCATTATGGCACTAGGATTTCCAAGGTTTAGCCAAGGCTTAACTCAGGACCCCACTACTCGTGGTATTTGGTTTGGTATTGCTACCGCGCCTGACTTCGAAAGGCATGATGATATTACTGAAGAACGTCTTTATCATCATCTTTTTGCTTCCTTCGCATTTCGGGCAATTAGCAAGAATTTGTCTGTGTATACTTCTATAAATATCTTTCATGTAGCTTGGCAAGGAAATTTTGAAGCATGGGTACAAGCAAGACCCTTTCCATGTAAGACCTATTTGCAATTTTGGATCCTCGGTCAACCGGAAAAGCTTTTACTCGAGGGGGTGCTCCCAGTGAATATCGCTTATTCTGGTGTTTCTTTCTTTCTCAGTGGTGGTATACAATCGGGTTACATACTAAGGGGGATCTTTATATGGGAGGGGAGCTCTTCTTTTTCTATTCTTTCTTTCTACCATATCTTTCATAGCGGGTTGGTTACACCTACAACCGAAATCGAAAGCGAGCCTTTCGTGGTTTCAAAATGCCAAATCTCGTCTCAATCATCATTTGTCAGGACTATTCATTTGGAGTCAGTTCCTTGGCTTGGACAGGCCATTTCAGCCATTTTATCAGTCCGGGGGCGCGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTCTATTCTGAATTTCCTGGCGGGGGGATATTGAGAACCAACCCAGTGACTCTTTCTTTCCATTGTGCAAGATTTGTTGGATTAGCCCCCTTTTCCGTAGGAATTTCGGTAGCTACGCCACCCCCAGAATTGAAAGAACCTAAAGGAGCGCATGGGGCATATATTCCGCAGAACGTCATTCTTGCCAAGGTTGTATATCTTTGCTTGCCTACTCAAGTCCAAACCATTAGGCCCCCTTACTTAGTGGTTCTAACCAAGGAGCACGCGGATCCAAAAAACGCATAG

Protein sequence

MKSCSCYSQPRALIEHCPRTCCRSNPSITLPSGWNCHNIGTLSLLSKNYCSRIMARRICIMALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFASFAFRAISKNLSVYTSINIFHVAWQGNFEAWVQARPFPCKTYLQFWILGQPEKLLLEGVLPVNIAYSGVSFFLSGGIQSGYILRGIFIWEGSSSFSILSFYHIFHSGLVTPTTEIESEPFVVSKCQISSQSSFVRTIHLESVPWLGQAISAILSVRGRGCSYLDILFGLLDFYSEFPGGGILRTNPVTLSFHCARFVGLAPFSVGISVATPPPELKEPKGAHGAYIPQNVILAKVVYLCLPTQVQTIRPPYLVVLTKEHADPKNA

Homology

[Close]

BLAST of CmaCh00G001320 vs. ExPASy Swiss-Prot
Match: Q4VZN4 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Cucumis sativus OX=3659 GN=psaB PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.3e-29
Identity = 78/125 (62.40%), Postives = 86/125 (68.80%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 178
            ++TS N+FHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

[Close]

BLAST of CmaCh00G001320 vs. ExPASy Swiss-Prot
Match: Q49KZ9 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=psaB PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.3e-29
Identity = 78/125 (62.40%), Postives = 86/125 (68.80%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 178
            ++TS N+FHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

[Close]

BLAST of CmaCh00G001320 vs. ExPASy Swiss-Prot
Match: P58385 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Lotus japonicus OX=34305 GN=psaB PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.3e-29
Identity = 78/125 (62.40%), Postives = 86/125 (68.80%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 178
            ++TS N+FHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

[Close]

BLAST of CmaCh00G001320 vs. ExPASy Swiss-Prot
Match: Q09X18 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Morus indica OX=248361 GN=psaB PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.3e-29
Identity = 78/125 (62.40%), Postives = 86/125 (68.80%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 178
            ++TS N+FHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

[Close]

BLAST of CmaCh00G001320 vs. ExPASy Swiss-Prot
Match: Q9MTN7 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Oenothera elata subsp. hookeri OX=85636 GN=psaB PE=3 SV=2)

HSP 1 Score: 132.1 bits (331), Expect = 1.3e-29
Identity = 78/125 (62.40%), Postives = 86/125 (68.80%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 178
            ++TS N+FHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

[Close]

BLAST of CmaCh00G001320 vs. ExPASy TrEMBL
Match: A0A6A6MGT7 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_042473 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.8e-34
Identity = 101/193 (52.33%), Postives = 115/193 (59.59%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL Q+PTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQNPTTRRIWFGIATAHDFESHDDITEERLYQNIFASYFGQLAI---I 60

Query: 121 SVYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS N+FHVAWQGNFEAWVQ     RP     +   +  GQP  E     G   PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAMEAFTRGGAHGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYILRGIFIWEGSSSFSILSFYHIFHSGLVTPTTEIESEPFVVSK 240
           AYS V                              +     SGLVTPTT++E+E FVV K
Sbjct: 121 AYSSV------------------------------YQWCLTSGLVTPTTKMETERFVVQK 158

Query: 241 CQISSQSSFVRTI 246
           C+ISSQSSFVRTI
Sbjct: 181 CRISSQSSFVRTI 158

[Close]

BLAST of CmaCh00G001320 vs. ExPASy TrEMBL
Match: A0A2G2XBU1 (Photosystem I chlorophyll a apoprotein A2 OS=Capsicum baccatum OX=33114 GN=CQW23_03450 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 9.0e-34
Identity = 97/191 (50.79%), Postives = 114/191 (59.69%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFASFAFRAISKNLS 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS  F  I+  + 
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASH-FGQIAV-IF 60

Query: 121 VYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNIA 180
           ++TS N+FHVAWQGNFE+WVQ     RP     +   +  GQP  E     G L PVNIA
Sbjct: 61  LWTSENLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNIA 120

Query: 181 YSGVSFFLSGGIQSGYILRGIFIWEGSSSFSILSFYHIFHSGLVTPTTEIESEPFVVSKC 240
           YSGV                                  +   LVTPTT++E+E F+V KC
Sbjct: 121 YSGV----------------------------------YQWWLVTPTTKMETERFLVQKC 153

Query: 241 QISSQSSFVRT 245
           +ISS+SSFVRT
Sbjct: 181 RISSESSFVRT 153

[Close]

BLAST of CmaCh00G001320 vs. ExPASy TrEMBL
Match: A0A2G3AIU9 (Photosystem I chlorophyll a apoprotein A2 OS=Capsicum annuum OX=4072 GN=T459_01975 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-33
Identity = 108/239 (45.19%), Postives = 130/239 (54.39%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++T  N+FHV WQGNFE+WVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTFENLFHVDWQGNFESWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYILRGIFIWEGSSSFSILSFYHIFHSGLVTPTTEIESEPFVVSK 240
           AYSGV                                  +   LVTPTTE+E+E F+V K
Sbjct: 121 AYSGV----------------------------------YQWWLVTPTTEMETERFLVQK 180

Query: 241 CQISSQSSFVRTIHLESVPWLGQAISAILSVRGRG-----CSYLDILFGLLDFYSEFPG 287
           C+ISS+SSFVRT   + +  L +A S       RG      ++LD+L  L    + F G
Sbjct: 181 CRISSESSFVRTFWRKFL-GLDRAFSPCCYPASRGEYVRWNNFLDVLPHLQGLGTHFTG 199

[Close]

BLAST of CmaCh00G001320 vs. ExPASy TrEMBL
Match: A0A2G2XVJ3 (Photosystem I chlorophyll a apoprotein A2 OS=Capsicum annuum OX=4072 GN=T459_34644 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.7e-32
Identity = 97/193 (50.26%), Postives = 112/193 (58.03%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEE LY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEECLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++T  N+FHVAWQGNFE+WVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTFGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYILRGIFIWEGSSSFSILSFYHIFHSGLVTPTTEIESEPFVVSK 240
           AYSGV                                  +   LVTPTTE+E+E F+V K
Sbjct: 121 AYSGV----------------------------------YQWWLVTPTTEMETERFLVQK 154

Query: 241 CQISSQSSFVRTI 246
           CQI S+SSFVRT+
Sbjct: 181 CQIWSESSFVRTL 154

[Close]

BLAST of CmaCh00G001320 vs. ExPASy TrEMBL
Match: A0A2G3BXH8 (Photosystem I OS=Capsicum chinense OX=80379 GN=BC332_18062 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 8.4e-32
Identity = 94/201 (46.77%), Postives = 113/201 (56.22%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFASFAFRAISKNLS 120
           MAL FPRFSQGL QDPTT  IWFGI TA DFE HDDITEERLY ++FAS   + +   + 
Sbjct: 1   MALRFPRFSQGLAQDPTTHRIWFGITTAYDFESHDDITEERLYQNIFASLFDQLVI--IF 60

Query: 121 VYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNIA 180
           ++TS N+FHV+WQGNFE+WVQ     RP     +   +  GQP  E     G L PVNI 
Sbjct: 61  LWTSGNLFHVSWQGNFESWVQNPLHVRPISHAIWDPHF--GQPVVEDFTRAGALGPVNIN 120

Query: 181 YSGVSFFLSGGIQSGYILRGIFIWEGSSSFSILSFYHIFHSGLVTPTTEIESEPFVVSKC 240
           YSGV                                  +   LVTP TE E+E F+V KC
Sbjct: 121 YSGV----------------------------------YQWWLVTPITEKETEHFLVQKC 163

Query: 241 QISSQSSFVRTI---HLESVP 252
           +ISS+SSFVRT    H+ S+P
Sbjct: 181 RISSESSFVRTFWYQHMYSLP 163

[Close]

BLAST of CmaCh00G001320 vs. NCBI nr
Match: KAF2312930.1 (hypothetical protein GH714_042473 [Hevea brasiliensis])

HSP 1 Score: 156.8 bits (395), Expect = 3.7e-34
Identity = 101/193 (52.33%), Postives = 115/193 (59.59%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL Q+PTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQNPTTRRIWFGIATAHDFESHDDITEERLYQNIFASYFGQLAI---I 60

Query: 121 SVYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS N+FHVAWQGNFEAWVQ     RP     +   +  GQP  E     G   PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAMEAFTRGGAHGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYILRGIFIWEGSSSFSILSFYHIFHSGLVTPTTEIESEPFVVSK 240
           AYS V                              +     SGLVTPTT++E+E FVV K
Sbjct: 121 AYSSV------------------------------YQWCLTSGLVTPTTKMETERFVVQK 158

Query: 241 CQISSQSSFVRTI 246
           C+ISSQSSFVRTI
Sbjct: 181 CRISSQSSFVRTI 158

[Close]

BLAST of CmaCh00G001320 vs. NCBI nr
Match: PHT54964.1 (Photosystem I chlorophyll a apoprotein A2 [Capsicum baccatum])

HSP 1 Score: 154.5 bits (389), Expect = 1.9e-33
Identity = 97/191 (50.79%), Postives = 114/191 (59.69%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFASFAFRAISKNLS 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS  F  I+  + 
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASH-FGQIAV-IF 60

Query: 121 VYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNIA 180
           ++TS N+FHVAWQGNFE+WVQ     RP     +   +  GQP  E     G L PVNIA
Sbjct: 61  LWTSENLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNIA 120

Query: 181 YSGVSFFLSGGIQSGYILRGIFIWEGSSSFSILSFYHIFHSGLVTPTTEIESEPFVVSKC 240
           YSGV                                  +   LVTPTT++E+E F+V KC
Sbjct: 121 YSGV----------------------------------YQWWLVTPTTKMETERFLVQKC 153

Query: 241 QISSQSSFVRT 245
           +ISS+SSFVRT
Sbjct: 181 RISSESSFVRT 153

[Close]

BLAST of CmaCh00G001320 vs. NCBI nr
Match: PHT94093.1 (Photosystem I chlorophyll a apoprotein A2 [Capsicum annuum])

HSP 1 Score: 154.1 bits (388), Expect = 2.4e-33
Identity = 108/239 (45.19%), Postives = 130/239 (54.39%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++T  N+FHV WQGNFE+WVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTFENLFHVDWQGNFESWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYILRGIFIWEGSSSFSILSFYHIFHSGLVTPTTEIESEPFVVSK 240
           AYSGV                                  +   LVTPTTE+E+E F+V K
Sbjct: 121 AYSGV----------------------------------YQWWLVTPTTEMETERFLVQK 180

Query: 241 CQISSQSSFVRTIHLESVPWLGQAISAILSVRGRG-----CSYLDILFGLLDFYSEFPG 287
           C+ISS+SSFVRT   + +  L +A S       RG      ++LD+L  L    + F G
Sbjct: 181 CRISSESSFVRTFWRKFL-GLDRAFSPCCYPASRGEYVRWNNFLDVLPHLQGLGTHFTG 199

[Close]

BLAST of CmaCh00G001320 vs. NCBI nr
Match: PHT61492.1 (Photosystem I chlorophyll a apoprotein A2 [Capsicum annuum])

HSP 1 Score: 150.2 bits (378), Expect = 3.5e-32
Identity = 97/193 (50.26%), Postives = 112/193 (58.03%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEE LY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEECLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++T  N+FHVAWQGNFE+WVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTFGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYILRGIFIWEGSSSFSILSFYHIFHSGLVTPTTEIESEPFVVSK 240
           AYSGV                                  +   LVTPTTE+E+E F+V K
Sbjct: 121 AYSGV----------------------------------YQWWLVTPTTEMETERFLVQK 154

Query: 241 CQISSQSSFVRTI 246
           CQI S+SSFVRT+
Sbjct: 181 CQIWSESSFVRTL 154

[Close]

BLAST of CmaCh00G001320 vs. NCBI nr
Match: PHU11132.1 (Photosystem I chlorophyll a apoprotein A2 [Capsicum chinense])

HSP 1 Score: 147.9 bits (372), Expect = 1.7e-31
Identity = 94/201 (46.77%), Postives = 113/201 (56.22%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFASFAFRAISKNLS 120
           MAL FPRFSQGL QDPTT  IWFGI TA DFE HDDITEERLY ++FAS   + +   + 
Sbjct: 1   MALRFPRFSQGLAQDPTTHRIWFGITTAYDFESHDDITEERLYQNIFASLFDQLVI--IF 60

Query: 121 VYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNIA 180
           ++TS N+FHV+WQGNFE+WVQ     RP     +   +  GQP  E     G L PVNI 
Sbjct: 61  LWTSGNLFHVSWQGNFESWVQNPLHVRPISHAIWDPHF--GQPVVEDFTRAGALGPVNIN 120

Query: 181 YSGVSFFLSGGIQSGYILRGIFIWEGSSSFSILSFYHIFHSGLVTPTTEIESEPFVVSKC 240
           YSGV                                  +   LVTP TE E+E F+V KC
Sbjct: 121 YSGV----------------------------------YQWWLVTPITEKETEHFLVQKC 163

Query: 241 QISSQSSFVRTI---HLESVP 252
           +ISS+SSFVRT    H+ S+P
Sbjct: 181 RISSESSFVRTFWYQHMYSLP 163

[Close]

BLAST of CmaCh00G001320 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 130.6 bits (327), Expect = 2.7e-30
Identity = 77/125 (61.60%), Postives = 85/125 (68.00%), Query Frame = 0


Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 178
            ++TS N+FHVAWQGNFE WVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFETWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

The following BLAST results are available for this feature:

BLAST of CmaCh00G001320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZN4	1.3e-29	62.40	Photosystem I P700 chlorophyll a apoprotein A2 OS=Cucumis sativus OX=3659 GN=psa...	[more]
Q49KZ9	1.3e-29	62.40	Photosystem I P700 chlorophyll a apoprotein A2 OS=Eucalyptus globulus subsp. glo...	[more]
P58385	1.3e-29	62.40	Photosystem I P700 chlorophyll a apoprotein A2 OS=Lotus japonicus OX=34305 GN=ps...	[more]
Q09X18	1.3e-29	62.40	Photosystem I P700 chlorophyll a apoprotein A2 OS=Morus indica OX=248361 GN=psaB...	[more]
Q9MTN7	1.3e-29	62.40	Photosystem I P700 chlorophyll a apoprotein A2 OS=Oenothera elata subsp. hookeri...	[more]

BLAST of CmaCh00G001320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A6MGT7	1.8e-34	52.33	Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_042473 PE=4 SV=1	[more]
A0A2G2XBU1	9.0e-34	50.79	Photosystem I chlorophyll a apoprotein A2 OS=Capsicum baccatum OX=33114 GN=CQW23...	[more]
A0A2G3AIU9	1.2e-33	45.19	Photosystem I chlorophyll a apoprotein A2 OS=Capsicum annuum OX=4072 GN=T459_019...	[more]
A0A2G2XVJ3	1.7e-32	50.26	Photosystem I chlorophyll a apoprotein A2 OS=Capsicum annuum OX=4072 GN=T459_346...	[more]
A0A2G3BXH8	8.4e-32	46.77	Photosystem I OS=Capsicum chinense OX=80379 GN=BC332_18062 PE=3 SV=1	[more]

BLAST of CmaCh00G001320 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF2312930.1	3.7e-34	52.33	hypothetical protein GH714_042473 [Hevea brasiliensis]	[more]
PHT54964.1	1.9e-33	50.79	Photosystem I chlorophyll a apoprotein A2 [Capsicum baccatum]	[more]
PHT94093.1	2.4e-33	45.19	Photosystem I chlorophyll a apoprotein A2 [Capsicum annuum]	[more]
PHT61492.1	3.5e-32	50.26	Photosystem I chlorophyll a apoprotein A2 [Capsicum annuum]	[more]
PHU11132.1	1.7e-31	46.77	Photosystem I chlorophyll a apoprotein A2 [Capsicum chinense]	[more]

BLAST of CmaCh00G001320 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00340.1	2.7e-30	61.60	Photosystem I, PsaA/PsaB protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036408	Photosystem I PsaA/PsaB superfamily	GENE3D	1.20.1130.10	Photosystem I PsaA/PsaB	coord: 61..265 e-value: 2.4E-21 score: 77.4
IPR036408	Photosystem I PsaA/PsaB superfamily	SUPERFAMILY	81558	Photosystem I subunits PsaA/PsaB	coord: 65..191
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 68..149 e-value: 3.4E-16 score: 58.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G001320.1	CmaCh00G001320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009536	plastid
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0005488	binding