CmaCh00G000950 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G000950
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Photosystem II reaction center protein L
Location	Cma_Chr00: 4655647 .. 4656089 (+)
RNA-Seq Expression	CmaCh00G000950
Synteny	CmaCh00G000950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGAACAAATGACTATCGATCAAACTTATCCTATTTTGACAGTGCGATTGTTGGGGAGGTTGGCTGTTCACGGACTAGCTGTACCTATCGTTTCTTTTTTAGGGTCAATATCAGCAATGCAATTCATCCAACGAGAAACCTAATCCGAATTATGGAGCTCTGACACAATCAAATCGGAACGAACACAATGTTGAATTGTATCGTACCTGTCTTTACTGGGGGTTATTCTTCATTTTTGTACTTGCTATTTTATTTTCCAATTATTTCTTGAATCAAAGCAAATACTAAATAATAGTACGAATTATCTTATTCATTTCTTTTTTAGGGTCAATATCAGCAATGCAATTCATCCAACGAGAAACCTAATCCGAATTATGGAGCTCTGACACAATCAAATCGGAACGAACACAATGTTGAATTGTATCGTACCTGTCTTTACTGG

mRNA sequence

GAGGAACAAATGACTATCGATCAAACTTATCCTATTTTGACAGTGCGATTGTTGGGGAGGTTGGCTGTTCACGGACTAGCTGTACCTATCGGTCAATATCAGCAATGCAATTCATCCAACGAGAAACCTAATCCGAATTATGGAGCTCTGACACAATCAAATCGGAACGAACACAATGTTGAATTGTATCGTACCTGTCTTTACTGGGGGTTATTCTTCATTTTTGGTCAATATCAGCAATGCAATTCATCCAACGAGAAACCTAATCCGAATTATGGAGCTCTGACACAATCAAATCGGAACGAACACAATGTTGAATTGTATCGTACCTGTCTTTACTGG

Coding sequence (CDS)

GAGGAACAAATGACTATCGATCAAACTTATCCTATTTTGACAGTGCGATTGTTGGGGAGGTTGGCTGTTCACGGACTAGCTGTACCTATCGGTCAATATCAGCAATGCAATTCATCCAACGAGAAACCTAATCCGAATTATGGAGCTCTGACACAATCAAATCGGAACGAACACAATGTTGAATTGTATCGTACCTGTCTTTACTGGGGGTTATTCTTCATTTTTGGTCAATATCAGCAATGCAATTCATCCAACGAGAAACCTAATCCGAATTATGGAGCTCTGACACAATCAAATCGGAACGAACACAATGTTGAATTGTATCGTACCTGTCTTTACTGG

Protein sequence

EEQMTIDQTYPILTVRLLGRLAVHGLAVPIGQYQQCNSSNEKPNPNYGALTQSNRNEHNVELYRTCLYWGLFFIFGQYQQCNSSNEKPNPNYGALTQSNRNEHNVELYRTCLYW

Homology

[Close]

BLAST of CmaCh00G000950 vs. ExPASy TrEMBL
Match: A0A396I2A3 (Putative photosystem II PsbL, photosystem II cytochrome b559 OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0016841 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.1e-18
Identity = 54/76 (71.05%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 4  MTIDQTYPILTVRLLGRLAVHGLAVP----IGQYQQCNSSNEKPNPNYGALTQSNRNEHN 63
          MTID+TYPI TVR    LAVHGLAVP      QYQQC+SSN+KPNPNY A TQSN NE N
Sbjct: 1  MTIDRTYPIFTVRW---LAVHGLAVPPFFFWDQYQQCSSSNDKPNPNYRATTQSNPNEQN 60

Query: 64 VELYRTCLYWGLFFIF 76
          VEL RT LYWGL  IF
Sbjct: 61 VELNRTSLYWGLLLIF 73

[Close]

BLAST of CmaCh00G000950 vs. ExPASy TrEMBL
Match: A0A498KUB4 (Cytochrom_B559 domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_037515 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.8e-18
Identity = 50/67 (74.63%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 4  MTIDQTYPILTVRLLGRLAVHGLAVPIGQYQQCNSSNEKPNPNYGALTQSNRNEHNVELY 63
          MTID+TYPI TVR    LAVHGLAVP GQYQQC+SSN+KPNPN+ A TQSN NE +VEL 
Sbjct: 1  MTIDRTYPIFTVRW---LAVHGLAVPTGQYQQCSSSNDKPNPNHRATTQSNPNEQSVELN 60

Query: 64 RTCLYWG 71
          RT LYWG
Sbjct: 61 RTSLYWG 64

[Close]

BLAST of CmaCh00G000950 vs. ExPASy TrEMBL
Match: A0A0V0HJS1 (Cytochrome b559 subunit alpha OS=Solanum chacoense OX=4108 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 6.2e-18
Identity = 54/80 (67.50%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 1   EEQMTIDQTYPILTVRLLGRLAVHGLAVP-----IGQYQQCNSSNEKPNPNYGALTQSNR 60
           E  MTID+TYPI TVR    LAVHGLAVP       QYQQC+SSN+K NPNY A+TQSN 
Sbjct: 85  EALMTIDRTYPIFTVRW---LAVHGLAVPTVFFXXDQYQQCSSSNDKLNPNYRAMTQSNP 144

Query: 61  NEHNVELYRTCLYWGLFFIF 76
           NE NVEL RT LYWGL  IF
Sbjct: 145 NEQNVELNRTSLYWGLLLIF 161

[Close]

BLAST of CmaCh00G000950 vs. ExPASy TrEMBL
Match: A0A452YMH1 (Cytochrom_B559 domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.0e-16
Identity = 50/77 (64.94%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 4  MTIDQTYPILTVRLLGRLAVHGLAVPI-----GQYQQCNSSNEKPNPNYGALTQSNRNEH 63
          MTID+TYPI TVR    LA+HGLAVP       QYQQC+SSN+K N NY  +TQSN NE 
Sbjct: 12 MTIDRTYPIFTVRW---LAIHGLAVPTVVFSWDQYQQCSSSNDKTNSNYRTMTQSNPNEQ 71

Query: 64 NVELYRTCLYWGLFFIF 76
          NVEL RT LYWGL  IF
Sbjct: 72 NVELNRTSLYWGLLLIF 85

[Close]

BLAST of CmaCh00G000950 vs. ExPASy TrEMBL
Match: A0A3S3N9C7 (Cytochrome b559 subunit alpha OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02737400 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.4e-16
Identity = 50/72 (69.44%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 4  MTIDQTYPILTVRLLGRLAVHGLAVPIGQYQQCNSSNEKPNPNYGALTQSNRNEHNVELY 63
          MTID+TYPI TVR    LAVHGLAVP     QC+SSN+KPNPNY A TQSN NE +VEL 
Sbjct: 1  MTIDRTYPIFTVRW---LAVHGLAVP----TQCSSSNDKPNPNYRATTQSNPNEQSVELN 60

Query: 64 RTCLYWGLFFIF 76
          RT LYWGL  IF
Sbjct: 61 RTSLYWGLLLIF 65

[Close]

BLAST of CmaCh00G000950 vs. NCBI nr
Match: RHN59720.1 (putative photosystem II PsbL, photosystem II cytochrome b559 [Medicago truncatula])

HSP 1 Score: 101.7 bits (252), Expect = 4.4e-18
Identity = 54/76 (71.05%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 4  MTIDQTYPILTVRLLGRLAVHGLAVP----IGQYQQCNSSNEKPNPNYGALTQSNRNEHN 63
          MTID+TYPI TVR    LAVHGLAVP      QYQQC+SSN+KPNPNY A TQSN NE N
Sbjct: 1  MTIDRTYPIFTVRW---LAVHGLAVPPFFFWDQYQQCSSSNDKPNPNYRATTQSNPNEQN 60

Query: 64 VELYRTCLYWGLFFIF 76
          VEL RT LYWGL  IF
Sbjct: 61 VELNRTSLYWGLLLIF 73

[Close]

BLAST of CmaCh00G000950 vs. NCBI nr
Match: RXI09994.1 (hypothetical protein DVH24_037515 [Malus domestica])

HSP 1 Score: 101.3 bits (251), Expect = 5.7e-18
Identity = 50/67 (74.63%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 4  MTIDQTYPILTVRLLGRLAVHGLAVPIGQYQQCNSSNEKPNPNYGALTQSNRNEHNVELY 63
          MTID+TYPI TVR    LAVHGLAVP GQYQQC+SSN+KPNPN+ A TQSN NE +VEL 
Sbjct: 1  MTIDRTYPIFTVRW---LAVHGLAVPTGQYQQCSSSNDKPNPNHRATTQSNPNEQSVELN 60

Query: 64 RTCLYWG 71
          RT LYWG
Sbjct: 61 RTSLYWG 64

[Close]

BLAST of CmaCh00G000950 vs. NCBI nr
Match: GGW27698.1 (hypothetical protein GCM10010294_70970 [Streptomyces griseoloalbus])

HSP 1 Score: 100.9 bits (250), Expect = 7.5e-18
Identity = 52/70 (74.29%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 4  MTIDQTYPILTVRLLGRLAVHGLAVPI---GQYQQCNSSNEKPNPNYGALTQSNRNEHNV 63
          MTID+TYPI TVR    LAVHGLAVP    GQYQQC+SSN+KPNPNY A+TQSN NE NV
Sbjct: 1  MTIDRTYPIFTVRW---LAVHGLAVPTLFGGQYQQCSSSNDKPNPNYRAMTQSNPNEQNV 60

Query: 64 ELYRTCLYWG 71
          EL RT LYWG
Sbjct: 61 ELNRTSLYWG 67

[Close]

BLAST of CmaCh00G000950 vs. NCBI nr
Match: RWR97904.1 (cytochrome b559 subunit alpha [Cinnamomum micranthum f. kanehirae] >RWR98294.1 cytochrome b559 subunit alpha [Cinnamomum micranthum f. kanehirae] >RWR98315.1 cytochrome b559 subunit alpha [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 94.0 bits (232), Expect = 9.1e-16
Identity = 50/72 (69.44%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 4  MTIDQTYPILTVRLLGRLAVHGLAVPIGQYQQCNSSNEKPNPNYGALTQSNRNEHNVELY 63
          MTID+TYPI TVR    LAVHGLAVP     QC+SSN+KPNPNY A TQSN NE +VEL 
Sbjct: 1  MTIDRTYPIFTVRW---LAVHGLAVP----TQCSSSNDKPNPNYRATTQSNPNEQSVELN 60

Query: 64 RTCLYWGLFFIF 76
          RT LYWGL  IF
Sbjct: 61 RTSLYWGLLLIF 65

[Close]

BLAST of CmaCh00G000950 vs. NCBI nr
Match: KAF4360008.1 (hypothetical protein F8388_004515, partial [Cannabis sativa])

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-13
Identity = 48/74 (64.86%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 1   EEQMTIDQTYPILTVRLLGRLAVHGLAVPIGQYQQCNSSNEKPNPNYGALTQSNRNEHNV 60
           E QM+ID+TY ILTVR    LAVHGLAVP   +    SSN+KPNPN+ A TQSN NE NV
Sbjct: 127 EAQMSIDRTYQILTVRW---LAVHGLAVPTVSF--LGSSNDKPNPNHRATTQSNPNEQNV 186

Query: 61  ELYRTCLYWGLFFI 75
           EL RT LYWG+ FI
Sbjct: 187 ELNRTNLYWGIRFI 195

[Close]

BLAST of CmaCh00G000950 vs. TAIR 10
Match: ATCG00560.1 (photosystem II reaction center protein L )

HSP 1 Score: 40.8 bits (94), Expect = 8.5e-04
Identity = 18/26 (69.23%), Postives = 20/26 (76.92%), Query Frame = 0


Query: 50 LTQSNRNEHNVELYRTCLYWGLFFIF 76
          +TQSN NE +VEL RT LYWGL  IF
Sbjct: 1  MTQSNPNEQSVELNRTSLYWGLLLIF 26

The following BLAST results are available for this feature:

BLAST of CmaCh00G000950 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh00G000950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A396I2A3	2.1e-18	71.05	Putative photosystem II PsbL, photosystem II cytochrome b559 OS=Medicago truncat...	[more]
A0A498KUB4	2.8e-18	74.63	Cytochrom_B559 domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_037...	[more]
A0A0V0HJS1	6.2e-18	67.50	Cytochrome b559 subunit alpha OS=Solanum chacoense OX=4108 PE=3 SV=1	[more]
A0A452YMH1	2.0e-16	64.94	Cytochrom_B559 domain-containing protein OS=Aegilops tauschii subsp. strangulata...	[more]
A0A3S3N9C7	4.4e-16	69.44	Cytochrome b559 subunit alpha OS=Cinnamomum micranthum f. kanehirae OX=337451 GN...	[more]

BLAST of CmaCh00G000950 vs. NCBI nr


Match Name	E-value	Identity	Description
RHN59720.1	4.4e-18	71.05	putative photosystem II PsbL, photosystem II cytochrome b559 [Medicago truncatul...	[more]
RXI09994.1	5.7e-18	74.63	hypothetical protein DVH24_037515 [Malus domestica]	[more]
GGW27698.1	7.5e-18	74.29	hypothetical protein GCM10010294_70970 [Streptomyces griseoloalbus]	[more]
RWR97904.1	9.1e-16	69.44	cytochrome b559 subunit alpha [Cinnamomum micranthum f. kanehirae] >RWR98294.1 c...	[more]
KAF4360008.1	1.5e-13	64.86	hypothetical protein F8388_004515, partial [Cannabis sativa]	[more]

BLAST of CmaCh00G000950 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00560.1	8.5e-04	69.23	photosystem II reaction center protein L	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037266	Photosystem II PsbL superfamily	SUPERFAMILY	161017	Photosystem II reaction center protein L, PsbL	coord: 51..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G000950.1	CmaCh00G000950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009539	photosystem II reaction center
molecular_function	GO:0020037	heme binding
molecular_function	GO:0046872	metal ion binding