CmaCh00G000850 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G000850
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Cytochrome f
Location	Cma_Chr00: 4293283 .. 4293934 (+)
RNA-Seq Expression	CmaCh00G000850
Synteny	CmaCh00G000850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATCCACGAGAAGCAACCAACCAGCCGTATTGTCTGCGCCAACTGCCATTTAGCTAATAAGCCCGTGTCGAGGTTCCACAAGCGGTACTTCCTGATACTGTATTTGAAGCAGTTGTTTGAATTCCTTATGATATGCAACTGAAACAAGTTCTTGCGAATGGGAAAAGGGTTTGAATGTGTCGGCTGTTCTTATTTTACCCGAAGGGTTTGAATTAGCCCCCCCAATCGTATTTCTCCCGAGATTAAAGAAAAGATGGGCAATCCTTTCAGAGCTATCGTCCCACTAAATAAAAGATTCTTGTGATAGGGCCCGTTCCTGGTCAGAAATATAGTGAAATAACCTTTCCTATTCTTTCCCCGGACCTTGCGACTAAGAAAAGATGTTCACTTCTGAAAATATCCCATATACGGAGGCGGGAACAGTGGAAGGGGTCAGATTTACCCGGGAGTTAGAGTCATAATAATGTTGATAATGCTACACAGGTATAGTAAGCAAAATAATACGAAAAGAAAAGGGAGGATATGAAATAACCATAGTGGATGCATCGAATGAGCGGCAAGTGGTTGATATTATCCCTCCAGGACCAGAACTTCTTGTTTCAGAGGGCGGGCGAATCTATCAAAATCAATCAACCATTAACGAGTAA

mRNA sequence

ATGAAAATCCACGAGAAGCAACCAACCAGCCGTATTGTCTGCGCCAACTGCCATTTAGCTAATAAGCCCGTGTCGAGGTTCCACAAGCGCAAAATAATACGAAAAGAAAAGGGAGGATATGAAATAACCATAGTGGATGCATCGAATGAGCGGCAAGTGGTTGATATTATCCCTCCAGGACCAGAACTTCTTGTTTCAGAGGGCGGGCGAATCTATCAAAATCAATCAACCATTAACGAGTAA

Coding sequence (CDS)

ATGAAAATCCACGAGAAGCAACCAACCAGCCGTATTGTCTGCGCCAACTGCCATTTAGCTAATAAGCCCGTGTCGAGGTTCCACAAGCGCAAAATAATACGAAAAGAAAAGGGAGGATATGAAATAACCATAGTGGATGCATCGAATGAGCGGCAAGTGGTTGATATTATCCCTCCAGGACCAGAACTTCTTGTTTCAGAGGGCGGGCGAATCTATCAAAATCAATCAACCATTAACGAGTAA

Protein sequence

MKIHEKQPTSRIVCANCHLANKPVSRFHKRKIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQSTINE

Homology

[Close]

BLAST of CmaCh00G000850 vs. ExPASy Swiss-Prot
Match: Q2QD76 (Cytochrome f OS=Cucumis sativus OX=3659 GN=petA PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-13
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 31  KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           KIIRKEKGGYEITIVDA+N RQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 216 KIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]

BLAST of CmaCh00G000850 vs. ExPASy Swiss-Prot
Match: Q49KY5 (Cytochrome f OS=Eucalyptus globulus subsp. globulus OX=71271 GN=petA PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-13
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 31  KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           KIIRKEKGGYEITI DAS+ERQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 216 KIIRKEKGGYEITISDASDERQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]

BLAST of CmaCh00G000850 vs. ExPASy Swiss-Prot
Match: Q09X04 (Cytochrome f OS=Morus indica OX=248361 GN=petA PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.1e-13
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 31  KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           KIIRKEKGGYEITIVDAS+ RQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 216 KIIRKEKGGYEITIVDASDGRQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]

BLAST of CmaCh00G000850 vs. ExPASy Swiss-Prot
Match: B1A948 (Cytochrome f OS=Carica papaya OX=3649 GN=petA PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.3e-13
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 31  KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           KI+RKEKGGYEITIVDAS+ RQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 216 KILRKEKGGYEITIVDASDGRQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]

BLAST of CmaCh00G000850 vs. ExPASy Swiss-Prot
Match: P05151 (Cytochrome f OS=Triticum aestivum OX=4565 GN=petA PE=3 SV=3)

HSP 1 Score: 74.7 bits (182), Expect = 5.3e-13
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 30  RKIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           RKI+RKEKGGYEI+IVDAS+ RQV+DIIPPGPELLVSEG  I  +Q
Sbjct: 215 RKILRKEKGGYEISIVDASDGRQVIDIIPPGPELLVSEGESIKLDQ 260

[Close]

BLAST of CmaCh00G000850 vs. ExPASy TrEMBL
Match: V4L6H4 (Apocytochr_F_N domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10011116mg PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.9e-14
Identity = 46/70 (65.71%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 6   KQPTSRIVCANCHLANKPVSRFHKRKIIRKEKGGYEITIVDASNERQVVDIIPPGPELLV 65
           ++ T  IVCANCHLA   +S     KI+RKEKGGYEITIVDASNERQV+DII  G ELLV
Sbjct: 48  REATGHIVCANCHLARGIIS-----KILRKEKGGYEITIVDASNERQVIDIIHRGLELLV 107

Query: 66  SEGGRIYQNQ 76
           SEG  I  +Q
Sbjct: 108 SEGESIKLDQ 112

[Close]

BLAST of CmaCh00G000850 vs. ExPASy TrEMBL
Match: A0A4S4DD60 (Photosystem I assembly protein Ycf4 OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_001459 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.4e-13
Identity = 51/107 (47.66%), Postives = 57/107 (53.27%), Query Frame = 0


Query: 6   KQPTSRIVCANCHLANKPV-------------------------------------SRFH 65
           ++ T RIVCANCHLANKPV                                     S   
Sbjct: 208 REATGRIVCANCHLANKPVDIEVPQAILPDTVFEAVVRIPYDMQLKQVLANVYNATSAGI 267

Query: 66  KRKIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
             +I+RKEKGGYEITIVDAS+  QVVDIIPPGPELLVSEG  I  +Q
Sbjct: 268 VSRIVRKEKGGYEITIVDASDGHQVVDIIPPGPELLVSEGESIKLDQ 314

[Close]

BLAST of CmaCh00G000850 vs. ExPASy TrEMBL
Match: A0A3P6GHZ7 (Apocytochr_F_N domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLSC29T60468H PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.5e-13
Identity = 46/91 (50.55%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 6   KQPTSRIVCANCHLANKPVS---------------------RFHKRKIIRKEKGGYEITI 65
           ++ T RIVCANCHLA+KPV                          ++++  EKGGYEITI
Sbjct: 48  REATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANEKGGYEITI 107

Query: 66  VDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           VDASNERQV+DIIP G ELLVSEG  I  +Q
Sbjct: 108 VDASNERQVIDIIPRGLELLVSEGESIKLDQ 138

[Close]

BLAST of CmaCh00G000850 vs. ExPASy TrEMBL
Match: A0A0D2ZXA0 (Apocytochr_F_N domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.5e-13
Identity = 46/91 (50.55%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 6   KQPTSRIVCANCHLANKPVS---------------------RFHKRKIIRKEKGGYEITI 65
           ++ T RIVCANCHLA+KPV                          ++++  EKGGYEITI
Sbjct: 14  REATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANEKGGYEITI 73

Query: 66  VDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           VDASNERQV+DIIP G ELLVSEG  I  +Q
Sbjct: 74  VDASNERQVIDIIPRGLELLVSEGESIKLDQ 104

[Close]

BLAST of CmaCh00G000850 vs. ExPASy TrEMBL
Match: A0A3P5Z1C1 (Apocytochr_F_N domain-containing protein OS=Brassica campestris OX=3711 GN=BRAA06T25421Z PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.5e-13
Identity = 46/91 (50.55%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 6   KQPTSRIVCANCHLANKPVS---------------------RFHKRKIIRKEKGGYEITI 65
           ++ T RIVCANCHLA+KPV                          ++++  EKGGYEITI
Sbjct: 48  REATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANEKGGYEITI 107

Query: 66  VDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           VDASNERQV+DIIP G ELLVSEG  I  +Q
Sbjct: 108 VDASNERQVIDIIPRGLELLVSEGESIKLDQ 138

[Close]

BLAST of CmaCh00G000850 vs. NCBI nr
Match: ESQ45940.1 (hypothetical protein EUTSA_v10011116mg [Eutrema salsugineum])

HSP 1 Score: 86.7 bits (213), Expect = 1.0e-13
Identity = 46/70 (65.71%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 6   KQPTSRIVCANCHLANKPVSRFHKRKIIRKEKGGYEITIVDASNERQVVDIIPPGPELLV 65
           ++ T  IVCANCHLA   +S     KI+RKEKGGYEITIVDASNERQV+DII  G ELLV
Sbjct: 48  REATGHIVCANCHLARGIIS-----KILRKEKGGYEITIVDASNERQVIDIIHRGLELLV 107

Query: 66  SEGGRIYQNQ 76
           SEG  I  +Q
Sbjct: 108 SEGESIKLDQ 112

[Close]

BLAST of CmaCh00G000850 vs. NCBI nr
Match: THG00580.1 (hypothetical protein TEA_001459 [Camellia sinensis var. sinensis])

HSP 1 Score: 85.1 bits (209), Expect = 3.0e-13
Identity = 51/107 (47.66%), Postives = 57/107 (53.27%), Query Frame = 0


Query: 6   KQPTSRIVCANCHLANKPV-------------------------------------SRFH 65
           ++ T RIVCANCHLANKPV                                     S   
Sbjct: 208 REATGRIVCANCHLANKPVDIEVPQAILPDTVFEAVVRIPYDMQLKQVLANVYNATSAGI 267

Query: 66  KRKIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
             +I+RKEKGGYEITIVDAS+  QVVDIIPPGPELLVSEG  I  +Q
Sbjct: 268 VSRIVRKEKGGYEITIVDASDGHQVVDIIPPGPELLVSEGESIKLDQ 314

[Close]

BLAST of CmaCh00G000850 vs. NCBI nr
Match: VDD25578.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 84.3 bits (207), Expect = 5.1e-13
Identity = 46/91 (50.55%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 6   KQPTSRIVCANCHLANKPVS---------------------RFHKRKIIRKEKGGYEITI 65
           ++ T RIVCANCHLA+KPV                          ++++  EKGGYEITI
Sbjct: 27  REATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANEKGGYEITI 86

Query: 66  VDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           VDASNERQV+DIIP G ELLVSEG  I  +Q
Sbjct: 87  VDASNERQVIDIIPRGLELLVSEGESIKLDQ 117

[Close]

BLAST of CmaCh00G000850 vs. NCBI nr
Match: CAF1918504.1 (unnamed protein product [Brassica napus] >VDD65240.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 84.3 bits (207), Expect = 5.1e-13
Identity = 46/91 (50.55%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 6   KQPTSRIVCANCHLANKPVS---------------------RFHKRKIIRKEKGGYEITI 65
           ++ T RIVCANCHLA+KPV                          ++++  EKGGYEITI
Sbjct: 48  REATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANEKGGYEITI 107

Query: 66  VDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           VDASNERQV+DIIP G ELLVSEG  I  +Q
Sbjct: 108 VDASNERQVIDIIPRGLELLVSEGESIKLDQ 138

[Close]

BLAST of CmaCh00G000850 vs. NCBI nr
Match: VDC66881.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 84.3 bits (207), Expect = 5.1e-13
Identity = 46/91 (50.55%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 6   KQPTSRIVCANCHLANKPVS---------------------RFHKRKIIRKEKGGYEITI 65
           ++ T RIVCANCHLA+KPV                          ++++  EKGGYEITI
Sbjct: 48  REATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQVLANEKGGYEITI 107

Query: 66  VDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           VDASNERQV+DIIP G ELLVSEG  I  +Q
Sbjct: 108 VDASNERQVIDIIPRGLELLVSEGESIKLDQ 138

[Close]

BLAST of CmaCh00G000850 vs. TAIR 10
Match: ATCG00540.1 (photosynthetic electron transfer A )

HSP 1 Score: 67.8 bits (164), Expect = 4.6e-12
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 31  KIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 76
           KI+RKEKGGYEITIVDASN R+V+DIIP G ELLVSEG  I  +Q
Sbjct: 216 KILRKEKGGYEITIVDASNGREVIDIIPRGLELLVSEGESIKLDQ 260

HSP 2 Score: 38.1 bits (87), Expect = 3.9e-03
Identity = 15/19 (78.95%), Postives = 17/19 (89.47%), Query Frame = 0


Query: 6  KQPTSRIVCANCHLANKPV 25
          ++ T RIVCANCHLANKPV
Sbjct: 48 REATGRIVCANCHLANKPV 66

The following BLAST results are available for this feature:

BLAST of CmaCh00G000850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD76	1.8e-13	84.44	Cytochrome f OS=Cucumis sativus OX=3659 GN=petA PE=3 SV=1	[more]
Q49KY5	2.4e-13	84.44	Cytochrome f OS=Eucalyptus globulus subsp. globulus OX=71271 GN=petA PE=3 SV=1	[more]
Q09X04	3.1e-13	84.44	Cytochrome f OS=Morus indica OX=248361 GN=petA PE=3 SV=1	[more]
B1A948	5.3e-13	82.22	Cytochrome f OS=Carica papaya OX=3649 GN=petA PE=3 SV=1	[more]
P05151	5.3e-13	78.26	Cytochrome f OS=Triticum aestivum OX=4565 GN=petA PE=3 SV=3	[more]

BLAST of CmaCh00G000850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
V4L6H4	4.9e-14	65.71	Apocytochr_F_N domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTS...	[more]
A0A4S4DD60	1.4e-13	47.66	Photosystem I assembly protein Ycf4 OS=Camellia sinensis var. sinensis OX=542762...	[more]
A0A3P6GHZ7	2.5e-13	50.55	Apocytochr_F_N domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLSC29...	[more]
A0A0D2ZXA0	2.5e-13	50.55	Apocytochr_F_N domain-containing protein OS=Brassica oleracea var. oleracea OX=1...	[more]
A0A3P5Z1C1	2.5e-13	50.55	Apocytochr_F_N domain-containing protein OS=Brassica campestris OX=3711 GN=BRAA0...	[more]

BLAST of CmaCh00G000850 vs. NCBI nr


Match Name	E-value	Identity	Description
ESQ45940.1	1.0e-13	65.71	hypothetical protein EUTSA_v10011116mg [Eutrema salsugineum]	[more]
THG00580.1	3.0e-13	47.66	hypothetical protein TEA_001459 [Camellia sinensis var. sinensis]	[more]
VDD25578.1	5.1e-13	50.55	unnamed protein product [Brassica rapa]	[more]
CAF1918504.1	5.1e-13	50.55	unnamed protein product [Brassica napus] >VDD65240.1 unnamed protein product [Br...	[more]
VDC66881.1	5.1e-13	50.55	unnamed protein product [Brassica rapa]	[more]

BLAST of CmaCh00G000850 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00540.1	4.6e-12	75.56	photosynthetic electron transfer A	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.100		coord: 30..76 e-value: 1.0E-15 score: 59.5
None	No IPR available	PANTHER	PTHR33288	FAMILY NOT NAMED	coord: 7..25
None	No IPR available	PANTHER	PTHR33288:SF9	CYTOCHROME F	coord: 7..25
None	No IPR available	PANTHER	PTHR33288	FAMILY NOT NAMED	coord: 30..76
None	No IPR available	PANTHER	PTHR33288:SF9	CYTOCHROME F	coord: 30..76
IPR002325	Cytochrome f	PROSITE	PS51010	CYTF	coord: 31..80 score: 9.506533
IPR011054	Rudiment single hybrid motif	SUPERFAMILY	51246	Rudiment single hybrid motif	coord: 31..76
IPR036826	Cytochrome f large domain superfamily	SUPERFAMILY	49441	Cytochrome f, large domain	coord: 6..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G000850.1	CmaCh00G000850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0031361	integral component of thylakoid membrane
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding