Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGATAAGCTTAATCATCGAGAGGGAAATAGCTCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTAGGGGTGCAGGTTTGTCAGGAGGTTTACCAAGAAGCATCCACCCTTGAAAGAGTGCGTAATAGCTCATTGATTGAGCGCTCTTGCGCCGAAGTTGAACGGGACTAAGCGATCTGCCGAAGCTGTGGTATGTAAAAAAACATTGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACTCGTGCGAGCAGTGGTGGATGAAGCAGAAGCGAGAATGTCGGCTTGAGTAACGCAAACATTTGTGAGAATCCAATGCCCCAAAAACCTAAGGGTTCCACCGCAAGGTTCGTCCACGGAGGGTGAGTCAGGGCCTAAGATCAGGCCAAAAGGCGTAGTCGATGGAAAATAG
mRNA sequence
ATGGGGGATAAGCTTAATCATCGAGAGGGAAATAGCTCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTAGGGGTGCAGTTGAACGGGACTAAGCGATCTGCCGAAGCTGTGGTATGTAAAAAAACATTGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACTCGTGCGAGCAGTGTAACGCAAACATTTGTGAGAATCCAATGCCCCAAAAACCTAAGGGTTCCACCGCAAGGTTCGTCCACGGAGGGTGAGTCAGGGCCTAAGATCAGGCCAAAAGGCGTAGTCGATGGAAAATAG
Coding sequence (CDS)
ATGGGGGATAAGCTTAATCATCGAGAGGGAAATAGCTCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTAGGGGTGCAGTTGAACGGGACTAAGCGATCTGCCGAAGCTGTGGTATGTAAAAAAACATTGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACTCGTGCGAGCAGTGTAACGCAAACATTTGTGAGAATCCAATGCCCCAAAAACCTAAGGGTTCCACCGCAAGGTTCGTCCACGGAGGGTGAGTCAGGGCCTAAGATCAGGCCAAAAGGCGTAGTCGATGGAAAATAG
Protein sequence
MGDKLNHREGNSSDHQLRPLNDRSVIKEVGVQLNGTKRSAEAVVCKKTLVGERSALEGSTRASSVTQTFVRIQCPKNLRVPPQGSSTEGESGPKIRPKGVVDGK
Homology
BLAST of CmaCh00G000420 vs. ExPASy TrEMBL
Match:
A0A2G3B5T9 (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_27106 PE=4 SV=1)
HSP 1 Score: 112.8 bits (281), Expect = 8.4e-22
Identity = 63/104 (60.58%), Postives = 70/104 (67.31%), Query Frame = 0
Query: 1 MGDKLNHREGNSSDHQLRPLNDRSVIKEVGVQLNGTKRSAEAVVCKKTLVGERSALEGST 60
MGDKL+ REGNS DHQLRPLN RSVIKEVGV+ + E +++L G G
Sbjct: 64 MGDKLHRREGNSPDHQLRPLNGRSVIKEVGVR---RQPGGEHFALERSLRGSGGGRSGRE 123
Query: 61 RASSVTQTFVRIQCPKNLRVPPQGSSTEGESGPKIRPKGVVDGK 105
T VRIQCPKNLRVP QGSSTEGE GPKIRPK VVDG+
Sbjct: 124 NVDLSNATLVRIQCPKNLRVPLQGSSTEGELGPKIRPKDVVDGQ 164
BLAST of CmaCh00G000420 vs. ExPASy TrEMBL
Match:
A0A6N2L9E4 (Uncharacterized protein ycf68 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS197109 PE=3 SV=1)
HSP 1 Score: 109.4 bits (272), Expect = 9.3e-21
Identity = 68/132 (51.52%), Postives = 74/132 (56.06%), Query Frame = 0
Query: 2 GDKLNHREGNSSDHQLRPLNDRSVIKE--------------------VGVQLNGTKRSAE 61
GDKL+ REGNS DHQLRPLNDRSVIKE ++NG
Sbjct: 260 GDKLHRREGNSPDHQLRPLNDRSVIKEEVCLEAATLERVRNSSLIERSCAKMNGLS-DLR 319
Query: 62 AVVCKKTLVG---------ERSALEGSTRASSVTQTFVRIQCPKNLRVPPQGSSTEGESG 105
+ CK VG ER GS T VRIQCP+NLRVPPQGSSTEGESG
Sbjct: 320 SCGCKNASVGAFRLEEAPRERGGRSGSENVGLSNATLVRIQCPENLRVPPQGSSTEGESG 379
BLAST of CmaCh00G000420 vs. ExPASy TrEMBL
Match:
A0A5A7VA45 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2613G00040 PE=4 SV=1)
HSP 1 Score: 99.0 bits (245), Expect = 1.3e-17
Identity = 62/106 (58.49%), Postives = 71/106 (66.98%), Query Frame = 0
Query: 1 MGDKLNHREGNSSDHQLRPLNDRSVIKEVGVQLNGTKRSAEAVVCKKTLVGERSALEGST 60
M DKL+ REGN+ DHQLRPLND SVIKEVGVQ + A A V + SA
Sbjct: 1 MRDKLHRREGNNLDHQLRPLNDCSVIKEVGVQ---RQPGAPARVVVEEAEAGMSAF---- 60
Query: 61 RASSVTQTFVRIQCPKN--LRVPPQGSSTEGESGPKIRPKGVVDGK 105
+ QT VRIQCP+N + VPPQGSSTEGE GPKIRPKGVV+G+
Sbjct: 61 ----LRQTLVRIQCPENRSVGVPPQGSSTEGELGPKIRPKGVVEGQ 95
BLAST of CmaCh00G000420 vs. ExPASy TrEMBL
Match:
A0A5A7SRJ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1620G00020 PE=4 SV=1)
HSP 1 Score: 98.6 bits (244), Expect = 1.6e-17
Identity = 62/106 (58.49%), Postives = 70/106 (66.04%), Query Frame = 0
Query: 1 MGDKLNHREGNSSDHQLRPLNDRSVIKEVGVQLNGTKRSAEAVVCKKTLVGERSALEGST 60
M DKL+ REGN+ DHQLRPLND SVIKEVGVQ + A A V + SA
Sbjct: 223 MRDKLHRREGNNLDHQLRPLNDCSVIKEVGVQ---RQPGAPAQVVVEEAEAGMSAF---- 282
Query: 61 RASSVTQTFVRIQCPKN--LRVPPQGSSTEGESGPKIRPKGVVDGK 105
+ QT VRIQCP+N + VPPQGS TEGE GPKIRPKGVVDG+
Sbjct: 283 ----LRQTLVRIQCPENRSVGVPPQGSFTEGELGPKIRPKGVVDGQ 317
BLAST of CmaCh00G000420 vs. ExPASy TrEMBL
Match:
A0A0R0IG95 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_09G164000 PE=4 SV=1)
HSP 1 Score: 92.8 bits (229), Expect = 9.0e-16
Identity = 51/64 (79.69%), Postives = 53/64 (82.81%), Query Frame = 0
Query: 1 MGDKLNHREGNSSDHQLRPLNDRSVIKEVGVQLNGTKRSAEAVVCKKTLVGERSALEGST 60
MGDKL+ REGNS DHQLRPLNDRSVIKE +NG KRSAEAV CKK VGERSALEG T
Sbjct: 1 MGDKLHRREGNSPDHQLRPLNDRSVIKE----MNGAKRSAEAVGCKKESVGERSALEGRT 60
Query: 61 RASS 65
RASS
Sbjct: 61 RASS 60
BLAST of CmaCh00G000420 vs. NCBI nr
Match:
KAG9438445.1 (hypothetical protein H6P81_021615 [Aristolochia fimbriata])
HSP 1 Score: 119.0 bits (297), Expect = 2.4e-23
Identity = 71/115 (61.74%), Postives = 77/115 (66.96%), Query Frame = 0
Query: 1 MGDKLNHREGNSSDHQLRPLNDRSVIKEVGVQLNGTKRSAEAVVCKKTLVGERSALEGST 60
MGDKL+ REGNS DHQLRPLNDRSVIKEVGVQ + GERSALE ST
Sbjct: 1 MGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQ--------------RQPGGERSALEEST 60
Query: 61 RASSVTQT-----------FVRIQCPKNLRVPPQGSSTEGESGPKIRPKGVVDGK 105
RAS ++ QCP+NLRVPPQGSSTEGESGPKIRPKGVVDG+
Sbjct: 61 RASRCGRSGSENVGLSNANIGENQCPENLRVPPQGSSTEGESGPKIRPKGVVDGQ 101
BLAST of CmaCh00G000420 vs. NCBI nr
Match:
KAG9438465.1 (hypothetical protein H6P81_021588 [Aristolochia fimbriata])
HSP 1 Score: 119.0 bits (297), Expect = 2.4e-23
Identity = 71/115 (61.74%), Postives = 77/115 (66.96%), Query Frame = 0
Query: 1 MGDKLNHREGNSSDHQLRPLNDRSVIKEVGVQLNGTKRSAEAVVCKKTLVGERSALEGST 60
MGDKL+ REGNS DHQLRPLNDRSVIKEVGVQ + GERSALE ST
Sbjct: 60 MGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQ--------------RQPGGERSALEEST 119
Query: 61 RASSVTQT-----------FVRIQCPKNLRVPPQGSSTEGESGPKIRPKGVVDGK 105
RAS ++ QCP+NLRVPPQGSSTEGESGPKIRPKGVVDG+
Sbjct: 120 RASRCGRSGSENVGLSNANIGENQCPENLRVPPQGSSTEGESGPKIRPKGVVDGQ 160
BLAST of CmaCh00G000420 vs. NCBI nr
Match:
KAG9438520.1 (hypothetical protein H6P81_021535 [Aristolochia fimbriata])
HSP 1 Score: 117.9 bits (294), Expect = 5.4e-23
Identity = 70/115 (60.87%), Postives = 77/115 (66.96%), Query Frame = 0
Query: 1 MGDKLNHREGNSSDHQLRPLNDRSVIKEVGVQLNGTKRSAEAVVCKKTLVGERSALEGST 60
MGDKL+ REGN+ DHQLRPLNDRSVIKEVGVQ + GERSALE ST
Sbjct: 60 MGDKLHRREGNNPDHQLRPLNDRSVIKEVGVQ--------------RQPGGERSALEEST 119
Query: 61 RASSVTQT-----------FVRIQCPKNLRVPPQGSSTEGESGPKIRPKGVVDGK 105
RAS ++ QCP+NLRVPPQGSSTEGESGPKIRPKGVVDG+
Sbjct: 120 RASRCGRSGSENVGLSNANIGENQCPENLRVPPQGSSTEGESGPKIRPKGVVDGQ 160
BLAST of CmaCh00G000420 vs. NCBI nr
Match:
PHU01855.1 (hypothetical protein BC332_27106 [Capsicum chinense])
HSP 1 Score: 112.8 bits (281), Expect = 1.7e-21
Identity = 63/104 (60.58%), Postives = 70/104 (67.31%), Query Frame = 0
Query: 1 MGDKLNHREGNSSDHQLRPLNDRSVIKEVGVQLNGTKRSAEAVVCKKTLVGERSALEGST 60
MGDKL+ REGNS DHQLRPLN RSVIKEVGV+ + E +++L G G
Sbjct: 64 MGDKLHRREGNSPDHQLRPLNGRSVIKEVGVR---RQPGGEHFALERSLRGSGGGRSGRE 123
Query: 61 RASSVTQTFVRIQCPKNLRVPPQGSSTEGESGPKIRPKGVVDGK 105
T VRIQCPKNLRVP QGSSTEGE GPKIRPK VVDG+
Sbjct: 124 NVDLSNATLVRIQCPKNLRVPLQGSSTEGELGPKIRPKDVVDGQ 164
BLAST of CmaCh00G000420 vs. NCBI nr
Match:
KAG9438481.1 (hypothetical protein H6P81_021574 [Aristolochia fimbriata])
HSP 1 Score: 107.5 bits (267), Expect = 7.3e-20
Identity = 65/107 (60.75%), Postives = 70/107 (65.42%), Query Frame = 0
Query: 9 EGNSSDHQLRPLNDRSVIKEVGVQLNGTKRSAEAVVCKKTLVGERSALEGSTRASSVTQT 68
EGNS DHQLRPLNDRSVIKEVGVQ + GERSALE STRAS ++
Sbjct: 20 EGNSPDHQLRPLNDRSVIKEVGVQ--------------RQPGGERSALEESTRASRCGRS 79
Query: 69 -----------FVRIQCPKNLRVPPQGSSTEGESGPKIRPKGVVDGK 105
QCP+NLRVPPQGSSTEGESGPKIRPKGVVDG+
Sbjct: 80 GSENVGLSNANIGENQCPENLRVPPQGSSTEGESGPKIRPKGVVDGQ 112
BLAST of CmaCh00G000420 vs. TAIR 10
Match:
AT2G07706.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00470.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )
HSP 1 Score: 43.5 bits (101), Expect = 1.2e-04
Identity = 21/24 (87.50%), Postives = 21/24 (87.50%), Query Frame = 0
Query: 9 EGNSSDHQLRPLNDRSVIKEVGVQ 33
EGNS DHQLRP N RSVIKEVGVQ
Sbjct: 57 EGNSPDHQLRPPNGRSVIKEVGVQ 80
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A2G3B5T9 | 8.4e-22 | 60.58 | Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_27106 PE=4 SV=1 | [more] |
A0A6N2L9E4 | 9.3e-21 | 51.52 | Uncharacterized protein ycf68 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS197109 PE... | [more] |
A0A5A7VA45 | 1.3e-17 | 58.49 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7SRJ8 | 1.6e-17 | 58.49 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A0R0IG95 | 9.0e-16 | 79.69 | Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_09G164000 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KAG9438445.1 | 2.4e-23 | 61.74 | hypothetical protein H6P81_021615 [Aristolochia fimbriata] | [more] |
KAG9438465.1 | 2.4e-23 | 61.74 | hypothetical protein H6P81_021588 [Aristolochia fimbriata] | [more] |
KAG9438520.1 | 5.4e-23 | 60.87 | hypothetical protein H6P81_021535 [Aristolochia fimbriata] | [more] |
PHU01855.1 | 1.7e-21 | 60.58 | hypothetical protein BC332_27106 [Capsicum chinense] | [more] |
KAG9438481.1 | 7.3e-20 | 60.75 | hypothetical protein H6P81_021574 [Aristolochia fimbriata] | [more] |
Match Name | E-value | Identity | Description | |
AT2G07706.1 | 1.2e-04 | 87.50 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |